Wall clock time and date at job start Mon Mar 30 2020 04:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46491 * 120.00453 * 2 1 4 4 C 1.50702 * 109.46957 * 90.00133 * 3 2 1 5 5 H 1.08002 * 120.00299 * 0.02562 * 4 3 2 6 6 C 1.37884 * 119.99942 * 179.72213 * 4 3 2 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 3 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 3 9 9 H 1.48501 * 109.47188 * 90.00793 * 8 6 4 10 10 H 1.48501 * 109.47085 * 210.00372 * 8 6 4 11 11 H 1.48498 * 109.47634 * 330.00608 * 8 6 4 12 12 C 1.34780 * 119.99526 * 180.02562 * 2 1 3 13 13 O 1.21285 * 119.99673 * 179.97438 * 12 2 1 14 14 C 1.50700 * 120.00400 * 359.97438 * 12 2 1 15 15 C 1.52994 * 109.47577 * 179.97438 * 14 12 2 16 16 H 1.09006 * 115.54580 * 330.67483 * 15 14 12 17 17 C 1.52996 * 117.50133 * 116.37852 * 15 14 12 18 18 C 1.52998 * 60.00144 * 107.49293 * 17 15 14 19 19 H 1.08998 * 117.51718 * 252.52493 * 18 17 15 20 20 C 1.52999 * 117.49799 * 107.49049 * 18 17 15 21 21 C 1.52992 * 117.50075 * 180.12722 * 20 18 17 22 22 C 1.52994 * 117.49743 * 111.46750 * 20 18 17 23 23 H 1.09000 * 109.47583 * 89.99529 * 1 2 3 24 24 H 1.09005 * 109.47610 * 210.00002 * 1 2 3 25 25 H 1.09006 * 109.46979 * 329.99538 * 1 2 3 26 26 H 1.09004 * 109.47166 * 330.00399 * 3 2 1 27 27 H 1.08994 * 109.47507 * 210.00106 * 3 2 1 28 28 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 29 29 H 1.08995 * 109.47359 * 300.00599 * 14 12 2 30 30 H 1.09008 * 109.46888 * 59.99948 * 14 12 2 31 31 H 1.08996 * 117.50542 * 214.98409 * 17 15 14 32 32 H 1.09004 * 117.49717 * 359.97438 * 17 15 14 33 33 H 1.09007 * 115.54997 * 325.79958 * 20 18 17 34 34 H 1.09005 * 117.50140 * 0.02562 * 21 20 18 35 35 H 1.08999 * 117.50310 * 145.01894 * 21 20 18 36 36 H 1.09004 * 117.49789 * 214.97812 * 22 20 18 37 37 H 1.08997 * 117.50022 * 359.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4487 1.7036 1.4208 5 1 2.0982 1.0956 2.2418 6 6 3.1316 2.8746 1.6728 7 7 3.5589 3.6147 0.6732 8 14 3.4497 3.4098 3.4340 9 1 4.7439 2.8472 3.8962 10 1 3.5032 4.8924 3.4987 11 1 2.3550 2.9154 4.3071 12 6 2.1388 -1.1673 -0.0005 13 8 3.3516 -1.1673 -0.0010 14 6 1.3852 -2.4724 -0.0005 15 6 2.3793 -3.6354 -0.0018 16 1 3.3362 -3.4353 -0.4841 17 6 2.3810 -4.5647 1.2135 18 6 1.8107 -5.0508 -0.1203 19 1 0.7283 -5.1534 -0.1978 20 6 2.6288 -6.0773 -0.9064 21 6 2.0600 -6.5612 -2.2416 22 6 2.0591 -7.4921 -1.0266 23 1 -0.3634 0.0001 -1.0276 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5139 26 1 1.6084 2.0283 -0.5138 27 1 3.1499 1.1383 -0.5138 28 1 4.0390 4.4388 0.8505 29 1 0.7589 -2.5303 0.8896 30 1 0.7582 -2.5299 -0.8903 31 1 3.3390 -4.9762 1.5312 32 1 1.6741 -4.3473 2.0143 33 1 3.7113 -5.9756 -0.8277 34 1 1.1030 -6.1479 -2.5605 35 1 2.7681 -6.7782 -3.0414 36 1 2.7668 -8.3212 -1.0275 37 1 1.1017 -7.6918 -0.5454 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712981662.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:05 Heat of formation + Delta-G solvation = -15.731726 kcal Electronic energy + Delta-G solvation = -16469.868502 eV Core-core repulsion = 13826.702454 eV Total energy + Delta-G solvation = -2643.166047 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.77041 -39.25092 -36.69406 -36.25920 -34.73155 -31.13642 -29.11519 -27.22333 -25.00323 -24.42326 -23.16853 -21.89310 -20.97702 -19.85074 -18.70305 -17.79781 -17.19289 -16.57388 -16.35200 -16.17794 -15.68171 -14.69822 -14.46542 -14.34734 -13.91660 -13.70953 -13.45038 -13.17094 -13.14522 -12.74316 -12.64887 -12.42995 -12.29641 -12.20507 -12.06531 -12.00339 -11.70259 -11.46880 -10.68609 -10.66353 -10.60671 -10.18835 -9.40182 -8.23363 -6.38740 1.35535 1.39094 1.48777 1.88200 2.31325 2.43498 2.66638 3.05814 3.30606 3.52989 3.77246 3.92608 4.03613 4.18518 4.32275 4.38066 4.39695 4.43023 4.62728 4.71072 4.75445 4.83003 4.84653 4.95166 4.97398 5.05845 5.08178 5.23219 5.25185 5.31953 5.34447 5.46114 5.56132 5.85291 6.05604 6.69340 6.82049 7.27721 7.52310 8.83750 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.041443 B = 0.004595 C = 0.004445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.458006 B = 6092.747860 C = 6297.909626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.614 5.614 3 C 0.258 3.742 4 C -0.544 4.544 5 H 0.053 0.947 6 C 0.005 3.995 7 N -0.930 5.930 8 Si 0.970 3.030 9 H -0.281 1.281 10 H -0.273 1.273 11 H -0.260 1.260 12 C 0.492 3.508 13 O -0.601 6.601 14 C -0.090 4.090 15 C -0.152 4.152 16 H 0.081 0.919 17 C -0.173 4.173 18 C -0.093 4.093 19 H 0.125 0.875 20 C -0.145 4.145 21 C -0.177 4.177 22 C -0.165 4.165 23 H 0.071 0.929 24 H 0.096 0.904 25 H 0.064 0.936 26 H 0.023 0.977 27 H -0.006 1.006 28 H 0.267 0.733 29 H 0.114 0.886 30 H 0.119 0.881 31 H 0.087 0.913 32 H 0.107 0.893 33 H 0.089 0.911 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.100 0.900 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.780 -18.753 -1.951 21.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.345 5.345 3 C 0.136 3.864 4 C -0.582 4.582 5 H 0.072 0.928 6 C -0.193 4.193 7 N -0.569 5.569 8 Si 0.794 3.206 9 H -0.207 1.207 10 H -0.198 1.198 11 H -0.184 1.184 12 C 0.282 3.718 13 O -0.483 6.483 14 C -0.129 4.129 15 C -0.171 4.171 16 H 0.099 0.901 17 C -0.210 4.210 18 C -0.111 4.111 19 H 0.143 0.857 20 C -0.163 4.163 21 C -0.214 4.214 22 C -0.201 4.201 23 H 0.089 0.911 24 H 0.115 0.885 25 H 0.083 0.917 26 H 0.041 0.959 27 H 0.012 0.988 28 H 0.076 0.924 29 H 0.132 0.868 30 H 0.137 0.863 31 H 0.105 0.895 32 H 0.125 0.875 33 H 0.107 0.893 34 H 0.120 0.880 35 H 0.114 0.886 36 H 0.118 0.882 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -9.105 -18.564 -2.005 20.774 hybrid contribution 0.844 0.949 0.632 1.418 sum -8.260 -17.616 -1.373 19.505 Atomic orbital electron populations 1.21945 0.77772 1.04068 1.02616 1.48219 1.08484 1.06373 1.71434 1.18737 0.91023 0.80634 0.96007 1.21729 1.36752 1.06704 0.93057 0.92831 1.25907 0.94865 0.96401 1.02172 1.70060 1.38795 1.14958 1.33130 0.85388 0.78666 0.77579 0.79013 1.20701 1.19818 1.18424 1.21469 0.87902 0.86779 0.75633 1.90615 1.16975 1.88163 1.52526 1.21218 0.97609 0.88224 1.05857 1.22007 1.00200 0.90423 1.04475 0.90070 1.23181 1.03039 1.02950 0.91783 1.21890 0.99200 0.92129 0.97888 0.85675 1.21747 0.98228 0.95841 1.00508 1.23028 1.03272 1.03813 0.91306 1.23021 1.03300 0.92296 1.01520 0.91102 0.88518 0.91716 0.95913 0.98762 0.92376 0.86769 0.86270 0.89453 0.87460 0.89253 0.87975 0.88606 0.88158 0.87649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.31 10.24 127.77 1.31 3.62 16 2 N -0.61 -26.73 2.86 -851.14 -2.43 -29.16 16 3 C 0.26 14.39 5.16 85.64 0.44 14.83 16 4 C -0.54 -32.22 9.39 25.60 0.24 -31.98 16 5 H 0.05 3.13 7.81 -2.91 -0.02 3.10 16 6 C 0.01 0.31 5.46 84.66 0.46 0.78 16 7 N -0.93 -57.48 13.29 21.45 0.28 -57.20 16 8 Si 0.97 45.68 29.54 68.60 2.03 47.71 16 9 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 10 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 11 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 12 C 0.49 21.12 7.67 87.66 0.67 21.79 16 13 O -0.60 -32.63 15.14 -3.05 -0.05 -32.68 16 14 C -0.09 -2.50 4.53 29.85 0.14 -2.36 16 15 C -0.15 -4.33 5.13 -10.80 -0.06 -4.38 16 16 H 0.08 2.93 7.31 -2.38 -0.02 2.91 16 17 C -0.17 -4.09 9.90 30.59 0.30 -3.79 16 18 C -0.09 -1.90 5.57 -10.79 -0.06 -1.96 16 19 H 0.13 2.00 8.14 -2.39 -0.02 1.99 16 20 C -0.14 -2.84 5.84 -10.80 -0.06 -2.91 16 21 C -0.18 -2.88 10.25 30.61 0.31 -2.57 16 22 C -0.16 -2.43 10.25 30.61 0.31 -2.12 16 23 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 24 H 0.10 2.10 6.44 -2.38 -0.02 2.08 16 25 H 0.06 2.04 8.07 -2.38 -0.02 2.02 16 26 H 0.02 1.28 8.07 -2.38 -0.02 1.26 16 27 H -0.01 -0.37 7.42 -2.39 -0.02 -0.39 16 28 H 0.27 15.44 8.31 -92.70 -0.77 14.67 16 29 H 0.11 2.58 7.14 -2.39 -0.02 2.56 16 30 H 0.12 2.58 8.11 -2.38 -0.02 2.56 16 31 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.11 2.23 8.03 -2.39 -0.02 2.21 16 33 H 0.09 1.98 8.14 -2.38 -0.02 1.97 16 34 H 0.10 1.51 8.14 -2.38 -0.02 1.49 16 35 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.10 1.31 8.14 -2.38 -0.02 1.29 16 37 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -75.90 313.39 4.87 -71.03 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: 1.03 Total: 11.36 kcal Atomic # 6 Polarization: -15.07 SS G_CDS: 4.01 Total: -11.06 kcal Atomic # 7 Polarization: -84.22 SS G_CDS: -2.15 Total: -86.36 kcal Atomic # 8 Polarization: -32.63 SS G_CDS: -0.05 Total: -32.68 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -75.90 4.87 -71.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712981662.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.297 kcal (2) G-P(sol) polarization free energy of solvation -75.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds