Wall clock time and date at job start Mon Mar 30 2020 03:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.46710 * 2 1 4 4 C 1.37094 * 120.00048 * 273.98607 * 3 2 1 5 5 H 1.08008 * 119.99760 * 145.95989 * 4 3 2 6 6 C 1.38948 * 120.00323 * 325.96366 * 4 3 2 7 7 N 1.31407 * 119.99729 * 337.47172 * 6 4 3 8 8 Si 1.86799 * 120.00126 * 157.47288 * 6 4 3 9 9 H 1.48498 * 109.47173 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47117 * 119.99793 * 8 6 4 11 11 H 1.48505 * 109.47062 * 240.00212 * 8 6 4 12 12 C 1.34777 * 119.99853 * 93.99371 * 3 2 1 13 13 O 1.21294 * 119.99737 * 179.97438 * 12 3 2 14 14 C 1.50701 * 120.00037 * 359.97438 * 12 3 2 15 15 C 1.53790 * 113.61211 * 180.02562 * 14 12 3 16 16 C 1.53782 * 87.16987 * 139.93647 * 15 14 12 17 17 C 1.53002 * 113.61100 * 220.05760 * 16 15 14 18 18 C 1.52995 * 117.50076 * 248.62215 * 17 16 15 19 19 C 1.52998 * 60.00271 * 252.50958 * 18 17 16 20 20 C 1.53789 * 113.61243 * 277.49388 * 14 12 3 21 21 H 1.08996 * 109.47229 * 179.97438 * 1 2 3 22 22 H 1.09006 * 109.47373 * 300.00191 * 1 2 3 23 23 H 1.09000 * 109.47491 * 60.00061 * 1 2 3 24 24 H 1.08993 * 109.47035 * 240.00306 * 2 1 3 25 25 H 1.08994 * 109.47053 * 119.99971 * 2 1 3 26 26 H 0.97007 * 119.99866 * 180.02562 * 7 6 4 27 27 H 1.08992 * 112.90890 * 48.74724 * 14 12 3 28 28 H 1.08997 * 113.61046 * 254.52127 * 15 14 12 29 29 H 1.08991 * 113.61738 * 25.34564 * 15 14 12 30 30 H 1.08996 * 113.61808 * 89.15738 * 16 15 14 31 31 H 1.08998 * 115.54897 * 34.33393 * 17 16 15 32 32 H 1.09003 * 117.49678 * 359.97438 * 18 17 16 33 33 H 1.08996 * 117.50345 * 145.02058 * 18 17 16 34 34 H 1.08991 * 117.50410 * 252.50817 * 19 18 17 35 35 H 1.09005 * 117.49820 * 107.48781 * 19 18 17 36 36 H 1.09000 * 113.61229 * 334.57359 * 20 14 12 37 37 H 1.08995 * 113.61288 * 105.38304 * 20 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1689 2.0551 -1.1844 5 1 1.9848 3.1185 -1.2279 6 6 2.5582 1.3700 -2.3288 7 7 3.1973 0.2266 -2.2246 8 14 2.1732 2.0745 -4.0155 9 1 1.4510 3.3628 -3.8608 10 1 3.4392 2.3022 -4.7576 11 1 1.3227 1.1183 -4.7690 12 6 2.3195 1.9895 1.1644 13 8 2.7241 3.1330 1.1643 14 6 2.1535 1.2490 2.4663 15 6 2.5383 2.0806 3.7014 16 6 1.3196 1.4599 4.4045 17 6 0.5446 2.4504 5.2759 18 6 0.5936 2.2468 6.7915 19 6 -0.6866 1.9259 6.0176 20 6 0.7127 1.2634 3.0039 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 3.4694 -0.2515 -3.0236 27 1 2.6036 0.2565 2.4503 28 1 3.4916 1.7907 4.1432 29 1 2.4527 3.1562 3.5476 30 1 1.5417 0.5253 4.9195 31 1 0.5107 3.4752 4.9063 32 1 1.1777 1.4069 7.1678 33 1 0.5922 3.1378 7.4193 34 1 -1.5302 2.6057 6.1362 35 1 -0.9444 0.8752 5.8848 36 1 0.1268 2.1157 2.6597 37 1 0.1913 0.3141 2.8809 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714423787.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:16 Heat of formation + Delta-G solvation = 5.958610 kcal Electronic energy + Delta-G solvation = -17310.285217 eV Core-core repulsion = 14668.059733 eV Total energy + Delta-G solvation = -2642.225484 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.70284 -37.69644 -35.59218 -34.74573 -31.87386 -29.37386 -26.94072 -25.25690 -24.60961 -22.28572 -22.17386 -21.38122 -19.48045 -18.13934 -16.70490 -16.18043 -15.60692 -15.06277 -14.49024 -14.38652 -13.93261 -13.29598 -12.84109 -12.70715 -12.17144 -12.05378 -11.79690 -11.61823 -11.53561 -11.35390 -11.04524 -11.00915 -10.81196 -10.41252 -10.37953 -10.27164 -10.18670 -9.94684 -9.75032 -9.47517 -8.92590 -8.22148 -7.39923 -6.25771 -3.88665 3.17981 3.28888 3.35732 3.80452 3.97408 4.20495 4.66900 4.85293 4.90882 4.99363 5.07671 5.21090 5.35543 5.37200 5.46146 5.57219 5.62755 5.87473 5.93060 6.04479 6.08960 6.11485 6.16542 6.21799 6.31559 6.35856 6.40369 6.45193 6.59071 6.67240 6.92870 6.99600 7.37251 7.66428 8.32139 8.59496 9.26589 9.51066 10.11907 10.75980 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.045432 B = 0.005919 C = 0.005704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.156270 B = 4729.219519 C = 4907.766406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.091 3.909 3 N -0.440 5.440 4 C -0.304 4.304 5 H 0.091 0.909 6 C 0.034 3.966 7 N -0.870 5.870 8 Si 0.915 3.085 9 H -0.268 1.268 10 H -0.282 1.282 11 H -0.281 1.281 12 C 0.468 3.532 13 O -0.585 6.585 14 C -0.130 4.130 15 C -0.106 4.106 16 C -0.084 4.084 17 C -0.134 4.134 18 C -0.183 4.183 19 C -0.182 4.182 20 C -0.110 4.110 21 H 0.046 0.954 22 H 0.046 0.954 23 H 0.055 0.945 24 H 0.113 0.887 25 H 0.048 0.952 26 H 0.266 0.734 27 H 0.098 0.902 28 H 0.062 0.938 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.104 0.896 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.282 -2.486 11.315 13.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.033 4.033 3 N -0.158 5.158 4 C -0.432 4.432 5 H 0.108 0.892 6 C -0.169 4.169 7 N -0.509 5.509 8 Si 0.741 3.259 9 H -0.192 1.192 10 H -0.208 1.208 11 H -0.207 1.207 12 C 0.256 3.744 13 O -0.469 6.469 14 C -0.151 4.151 15 C -0.144 4.144 16 C -0.102 4.102 17 C -0.152 4.152 18 C -0.220 4.220 19 C -0.219 4.219 20 C -0.148 4.148 21 H 0.065 0.935 22 H 0.065 0.935 23 H 0.074 0.926 24 H 0.131 0.869 25 H 0.066 0.934 26 H 0.076 0.924 27 H 0.116 0.884 28 H 0.080 0.920 29 H 0.111 0.889 30 H 0.104 0.896 31 H 0.122 0.878 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.110 0.890 36 H 0.100 0.900 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.004 -2.063 11.150 12.831 hybrid contribution -0.164 0.027 -0.896 0.911 sum -6.168 -2.036 10.255 12.139 Atomic orbital electron populations 1.22196 0.98208 0.99999 1.01705 1.21644 0.92165 0.85653 1.03858 1.43521 1.55591 1.11955 1.04773 1.19476 1.44461 0.94619 0.84670 0.89175 1.25293 0.95019 0.96593 1.00003 1.69883 1.34571 1.16799 1.29672 0.86059 0.78345 0.79257 0.82204 1.19247 1.20845 1.20666 1.20117 0.81298 0.87948 0.85026 1.90490 1.50216 1.19059 1.87137 1.22587 0.98039 1.00153 0.94353 1.22786 0.96625 1.00958 0.94056 1.22156 0.96576 0.97403 0.94113 1.22300 1.00114 1.00134 0.92680 1.22936 1.01377 1.03090 0.94639 1.22885 0.91893 1.01908 1.05197 1.22866 0.95484 1.01985 0.94496 0.93507 0.93531 0.92591 0.86921 0.93402 0.92402 0.88385 0.91953 0.88910 0.89604 0.87795 0.89029 0.89226 0.89195 0.88963 0.89989 0.91394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.04 10.22 37.16 0.38 -2.66 16 2 C 0.09 2.01 5.63 -4.04 -0.02 1.98 16 3 N -0.44 -11.32 2.55 -114.81 -0.29 -11.61 16 4 C -0.30 -8.59 8.96 -14.94 -0.13 -8.73 16 5 H 0.09 2.68 7.71 -52.48 -0.40 2.28 16 6 C 0.03 0.92 5.00 -17.47 -0.09 0.83 16 7 N -0.87 -23.73 11.24 55.50 0.62 -23.10 16 8 Si 0.91 20.87 29.61 -169.99 -5.03 15.83 16 9 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 12 C 0.47 11.66 7.15 -10.99 -0.08 11.58 16 13 O -0.58 -16.71 15.72 5.55 0.09 -16.63 16 14 C -0.13 -2.45 2.92 -90.95 -0.27 -2.71 16 15 C -0.11 -1.78 6.96 -25.91 -0.18 -1.96 16 16 C -0.08 -1.16 3.82 -89.74 -0.34 -1.50 16 17 C -0.13 -1.67 5.42 -90.62 -0.49 -2.16 16 18 C -0.18 -1.92 10.24 -26.74 -0.27 -2.20 16 19 C -0.18 -1.94 10.25 -26.73 -0.27 -2.21 16 20 C -0.11 -1.74 5.78 -25.85 -0.15 -1.89 16 21 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 22 H 0.05 0.81 5.86 -51.93 -0.30 0.51 16 23 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 24 H 0.11 2.77 5.29 -51.93 -0.27 2.49 16 25 H 0.05 0.95 6.06 -51.93 -0.31 0.63 16 26 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 27 H 0.10 1.75 6.94 -51.93 -0.36 1.39 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.09 1.73 7.38 -51.93 -0.38 1.35 16 30 H 0.09 1.07 8.13 -51.93 -0.42 0.64 16 31 H 0.10 1.38 8.14 -51.93 -0.42 0.95 16 32 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.08 1.40 8.05 -51.93 -0.42 0.99 16 37 H 0.07 0.97 7.46 -51.93 -0.39 0.58 16 LS Contribution 299.13 15.07 4.51 4.51 Total: -1.00 -30.68 299.13 -7.81 -38.49 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -5.79 Total: 4.14 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: -1.92 Total: -11.63 kcal Atomic # 7 Polarization: -35.05 SS G_CDS: 0.33 Total: -34.72 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: 0.09 Total: -16.63 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.03 Total: 15.83 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.68 -7.81 -38.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714423787.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.453 kcal (2) G-P(sol) polarization free energy of solvation -30.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds