Wall clock time and date at job start Mon Mar 30 2020 03:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.46710 * 2 1 4 4 C 1.37094 * 120.00048 * 273.98607 * 3 2 1 5 5 H 1.08008 * 119.99760 * 145.95989 * 4 3 2 6 6 C 1.38948 * 120.00323 * 325.96366 * 4 3 2 7 7 N 1.31407 * 119.99729 * 337.47172 * 6 4 3 8 8 Si 1.86799 * 120.00126 * 157.47288 * 6 4 3 9 9 H 1.48498 * 109.47173 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47117 * 119.99793 * 8 6 4 11 11 H 1.48505 * 109.47062 * 240.00212 * 8 6 4 12 12 C 1.34777 * 119.99853 * 93.99371 * 3 2 1 13 13 O 1.21294 * 119.99737 * 179.97438 * 12 3 2 14 14 C 1.50701 * 120.00037 * 359.97438 * 12 3 2 15 15 C 1.53790 * 113.61211 * 180.02562 * 14 12 3 16 16 C 1.53782 * 87.16987 * 139.93647 * 15 14 12 17 17 C 1.53002 * 113.61100 * 220.05760 * 16 15 14 18 18 C 1.52995 * 117.50076 * 248.62215 * 17 16 15 19 19 C 1.52998 * 60.00271 * 252.50958 * 18 17 16 20 20 C 1.53789 * 113.61243 * 277.49388 * 14 12 3 21 21 H 1.08996 * 109.47229 * 179.97438 * 1 2 3 22 22 H 1.09006 * 109.47373 * 300.00191 * 1 2 3 23 23 H 1.09000 * 109.47491 * 60.00061 * 1 2 3 24 24 H 1.08993 * 109.47035 * 240.00306 * 2 1 3 25 25 H 1.08994 * 109.47053 * 119.99971 * 2 1 3 26 26 H 0.97007 * 119.99866 * 180.02562 * 7 6 4 27 27 H 1.08992 * 112.90890 * 48.74724 * 14 12 3 28 28 H 1.08997 * 113.61046 * 254.52127 * 15 14 12 29 29 H 1.08991 * 113.61738 * 25.34564 * 15 14 12 30 30 H 1.08996 * 113.61808 * 89.15738 * 16 15 14 31 31 H 1.08998 * 115.54897 * 34.33393 * 17 16 15 32 32 H 1.09003 * 117.49678 * 359.97438 * 18 17 16 33 33 H 1.08996 * 117.50345 * 145.02058 * 18 17 16 34 34 H 1.08991 * 117.50410 * 252.50817 * 19 18 17 35 35 H 1.09005 * 117.49820 * 107.48781 * 19 18 17 36 36 H 1.09000 * 113.61229 * 334.57359 * 20 14 12 37 37 H 1.08995 * 113.61288 * 105.38304 * 20 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1689 2.0551 -1.1844 5 1 1.9848 3.1185 -1.2279 6 6 2.5582 1.3700 -2.3288 7 7 3.1973 0.2266 -2.2246 8 14 2.1732 2.0745 -4.0155 9 1 1.4510 3.3628 -3.8608 10 1 3.4392 2.3022 -4.7576 11 1 1.3227 1.1183 -4.7690 12 6 2.3195 1.9895 1.1644 13 8 2.7241 3.1330 1.1643 14 6 2.1535 1.2490 2.4663 15 6 2.5383 2.0806 3.7014 16 6 1.3196 1.4599 4.4045 17 6 0.5446 2.4504 5.2759 18 6 0.5936 2.2468 6.7915 19 6 -0.6866 1.9259 6.0176 20 6 0.7127 1.2634 3.0039 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 3.4694 -0.2515 -3.0236 27 1 2.6036 0.2565 2.4503 28 1 3.4916 1.7907 4.1432 29 1 2.4527 3.1562 3.5476 30 1 1.5417 0.5253 4.9195 31 1 0.5107 3.4752 4.9063 32 1 1.1777 1.4069 7.1678 33 1 0.5922 3.1378 7.4193 34 1 -1.5302 2.6057 6.1362 35 1 -0.9444 0.8752 5.8848 36 1 0.1268 2.1157 2.6597 37 1 0.1913 0.3141 2.8809 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714423787.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:15 Heat of formation + Delta-G solvation = -11.069221 kcal Electronic energy + Delta-G solvation = -17311.023599 eV Core-core repulsion = 14668.059733 eV Total energy + Delta-G solvation = -2642.963866 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.23070 -39.18551 -37.00492 -36.47176 -33.89535 -31.14277 -28.53186 -26.56721 -26.36657 -23.88536 -23.05869 -22.78598 -20.68089 -19.82837 -18.65895 -17.90627 -17.00663 -16.73020 -16.02457 -15.71317 -15.54194 -14.88335 -14.45676 -14.34661 -13.71282 -13.54333 -13.34510 -13.12711 -12.91369 -12.81293 -12.57667 -12.31535 -12.29006 -12.16875 -11.97780 -11.79460 -11.55692 -11.41038 -10.98345 -10.81689 -10.53633 -10.15920 -9.42650 -8.31331 -6.03247 1.34463 1.39941 1.53823 2.06642 2.30465 2.91812 3.02684 3.13264 3.68360 3.77948 3.80545 3.99851 4.13351 4.19857 4.27510 4.39042 4.47493 4.61673 4.70177 4.76357 4.86764 4.87547 4.94701 4.96614 5.06119 5.08829 5.12050 5.26215 5.35339 5.36895 5.39044 5.46723 5.64410 5.67385 6.22490 6.57891 7.21184 7.53372 8.13320 8.68577 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.045432 B = 0.005919 C = 0.005704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.156270 B = 4729.219519 C = 4907.766406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.089 3.911 3 N -0.452 5.452 4 C -0.342 4.342 5 H 0.058 0.942 6 C 0.004 3.996 7 N -0.888 5.888 8 Si 0.978 3.022 9 H -0.274 1.274 10 H -0.278 1.278 11 H -0.262 1.262 12 C 0.451 3.549 13 O -0.638 6.638 14 C -0.132 4.132 15 C -0.111 4.111 16 C -0.057 4.057 17 C -0.160 4.160 18 C -0.171 4.171 19 C -0.171 4.171 20 C -0.103 4.103 21 H 0.082 0.918 22 H 0.058 0.942 23 H 0.034 0.966 24 H 0.089 0.911 25 H 0.071 0.929 26 H 0.273 0.727 27 H 0.115 0.885 28 H 0.074 0.926 29 H 0.063 0.937 30 H 0.114 0.886 31 H 0.085 0.915 32 H 0.104 0.896 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.103 0.897 36 H 0.061 0.939 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.465 -4.426 12.506 15.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.034 4.034 3 N -0.170 5.170 4 C -0.470 4.470 5 H 0.076 0.924 6 C -0.198 4.198 7 N -0.526 5.526 8 Si 0.802 3.198 9 H -0.199 1.199 10 H -0.204 1.204 11 H -0.186 1.186 12 C 0.241 3.759 13 O -0.526 6.526 14 C -0.153 4.153 15 C -0.149 4.149 16 C -0.076 4.076 17 C -0.178 4.178 18 C -0.208 4.208 19 C -0.208 4.208 20 C -0.141 4.141 21 H 0.101 0.899 22 H 0.077 0.923 23 H 0.053 0.947 24 H 0.107 0.893 25 H 0.089 0.911 26 H 0.083 0.917 27 H 0.133 0.867 28 H 0.093 0.907 29 H 0.081 0.919 30 H 0.132 0.868 31 H 0.104 0.896 32 H 0.122 0.878 33 H 0.116 0.884 34 H 0.115 0.885 35 H 0.122 0.878 36 H 0.079 0.921 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.199 -4.045 12.347 14.854 hybrid contribution 0.262 0.646 -1.274 1.452 sum -6.938 -3.399 11.073 13.502 Atomic orbital electron populations 1.22097 0.95528 1.02167 1.01280 1.21761 0.94376 0.83527 1.03746 1.43817 1.55565 1.13164 1.04409 1.19374 1.46913 0.93894 0.86855 0.92417 1.26012 0.94056 0.96865 1.02895 1.69947 1.34184 1.17423 1.31012 0.85123 0.78310 0.78624 0.77745 1.19857 1.20369 1.18642 1.21212 0.80042 0.87742 0.86873 1.90440 1.52392 1.21529 1.88201 1.22678 1.01077 1.00268 0.91312 1.22781 0.99038 0.99182 0.93925 1.22014 0.94023 0.98278 0.93238 1.22175 1.02385 0.99135 0.94152 1.23037 1.01079 1.03816 0.92863 1.22978 0.91660 1.02592 1.03583 1.22823 0.93377 1.02388 0.95466 0.89907 0.92322 0.94689 0.89291 0.91057 0.91675 0.86722 0.90737 0.91862 0.86848 0.89646 0.87779 0.88450 0.88524 0.87832 0.92055 0.88896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.46 10.22 71.98 0.74 -4.72 16 2 C 0.09 3.87 5.63 86.38 0.49 4.36 16 3 N -0.45 -23.86 2.55 -635.54 -1.62 -25.48 16 4 C -0.34 -20.10 8.96 84.04 0.75 -19.35 16 5 H 0.06 3.68 7.71 -2.91 -0.02 3.65 16 6 C 0.00 0.21 5.00 84.93 0.42 0.64 16 7 N -0.89 -48.55 11.24 21.66 0.24 -48.30 16 8 Si 0.98 43.24 29.61 68.60 2.03 45.28 16 9 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 10 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 11 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 12 C 0.45 23.23 7.15 87.66 0.63 23.86 16 13 O -0.64 -38.61 15.72 -3.07 -0.05 -38.66 16 14 C -0.13 -4.91 2.92 -11.01 -0.03 -4.94 16 15 C -0.11 -3.70 6.96 31.12 0.22 -3.48 16 16 C -0.06 -1.44 3.82 -10.22 -0.04 -1.48 16 17 C -0.16 -3.70 5.42 -10.79 -0.06 -3.75 16 18 C -0.17 -3.05 10.24 30.59 0.31 -2.74 16 19 C -0.17 -3.10 10.25 30.59 0.31 -2.79 16 20 C -0.10 -3.06 5.78 31.17 0.18 -2.88 16 21 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 22 H 0.06 1.93 5.86 -2.38 -0.01 1.92 16 23 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.09 4.35 5.29 -2.39 -0.01 4.34 16 25 H 0.07 2.70 6.06 -2.39 -0.01 2.69 16 26 H 0.27 13.85 8.31 -92.70 -0.77 13.08 16 27 H 0.11 3.86 6.94 -2.39 -0.02 3.84 16 28 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.06 2.48 7.38 -2.39 -0.02 2.46 16 30 H 0.11 2.29 8.13 -2.39 -0.02 2.27 16 31 H 0.09 2.27 8.14 -2.39 -0.02 2.26 16 32 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.10 1.67 8.14 -2.38 -0.02 1.65 16 36 H 0.06 2.09 8.05 -2.39 -0.02 2.07 16 37 H 0.09 2.30 7.46 -2.39 -0.02 2.29 16 Total: -1.00 -69.74 299.13 5.57 -64.18 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: 1.04 Total: 20.26 kcal Atomic # 6 Polarization: -21.20 SS G_CDS: 3.92 Total: -17.28 kcal Atomic # 7 Polarization: -72.41 SS G_CDS: -1.38 Total: -73.78 kcal Atomic # 8 Polarization: -38.61 SS G_CDS: -0.05 Total: -38.66 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.28 kcal Total: -69.74 5.57 -64.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714423787.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.107 kcal (2) G-P(sol) polarization free energy of solvation -69.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds