Wall clock time and date at job start Mon Mar 30 2020 03:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46505 * 119.99983 * 2 1 4 4 C 1.50697 * 109.47213 * 269.99986 * 3 2 1 5 5 H 1.08000 * 120.00123 * 0.02562 * 4 3 2 6 6 C 1.37879 * 120.00022 * 179.97438 * 4 3 2 7 7 N 1.31509 * 120.00085 * 180.02562 * 6 4 3 8 8 Si 1.86805 * 119.99848 * 0.02562 * 6 4 3 9 9 H 1.48498 * 109.46848 * 89.99668 * 8 6 4 10 10 H 1.48498 * 109.47146 * 209.99815 * 8 6 4 11 11 H 1.48498 * 109.46814 * 329.99778 * 8 6 4 12 12 C 1.34774 * 120.00343 * 180.02562 * 2 1 3 13 13 O 1.21277 * 120.00187 * 179.97438 * 12 2 1 14 14 C 1.50697 * 119.99787 * 0.02562 * 12 2 1 15 15 C 1.53786 * 113.61613 * 180.02562 * 14 12 2 16 16 C 1.53781 * 87.17350 * 89.15662 * 15 14 12 17 17 C 1.53003 * 113.61480 * 139.93948 * 16 15 14 18 18 C 1.53000 * 117.49832 * 128.62115 * 17 16 15 19 19 C 1.53002 * 60.00086 * 252.51374 * 18 17 16 20 20 C 1.53782 * 87.08260 * 25.39213 * 16 15 14 21 21 H 1.08994 * 109.46796 * 270.00009 * 1 2 3 22 22 H 1.08994 * 109.47275 * 29.99974 * 1 2 3 23 23 H 1.08996 * 109.46637 * 149.99842 * 1 2 3 24 24 H 1.09003 * 109.46840 * 30.00242 * 3 2 1 25 25 H 1.08995 * 109.47077 * 149.99676 * 3 2 1 26 26 H 0.96998 * 120.00138 * 180.02562 * 7 6 4 27 27 H 1.09000 * 112.91063 * 48.74933 * 14 12 2 28 28 H 1.09002 * 113.61357 * 334.56579 * 15 14 12 29 29 H 1.09002 * 113.61608 * 203.74741 * 15 14 12 30 30 H 1.08997 * 113.61223 * 270.84552 * 16 15 14 31 31 H 1.08996 * 115.54886 * 274.32921 * 17 16 15 32 32 H 1.09002 * 117.49568 * 0.02562 * 18 17 16 33 33 H 1.08994 * 117.49607 * 145.01899 * 18 17 16 34 34 H 1.09002 * 117.49534 * 252.51551 * 19 18 17 35 35 H 1.08992 * 117.49999 * 107.49038 * 19 18 17 36 36 H 1.08997 * 113.61668 * 89.11298 * 20 16 15 37 37 H 1.08998 * 113.61674 * 219.93807 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0975 1.0963 -2.2417 6 6 3.1260 2.8781 -1.6727 7 7 3.3448 3.2580 -2.9126 8 14 3.7330 3.9293 -0.2528 9 1 5.1065 3.5081 0.1231 10 1 3.7478 5.3561 -0.6642 11 1 2.8270 3.7592 0.9115 12 6 2.1390 -1.1671 -0.0005 13 8 3.3517 -1.1671 -0.0010 14 6 1.3855 -2.4722 -0.0017 15 6 2.2978 -3.7103 -0.0015 16 6 2.2698 -3.6365 1.5342 17 6 2.1687 -5.0046 2.2118 18 6 3.1876 -5.3278 3.3065 19 6 3.2886 -6.0114 1.9413 20 6 0.9183 -2.9159 1.3966 21 1 -0.3633 0.0000 1.0276 22 1 -0.3633 0.8899 -0.5138 23 1 -0.3632 -0.8900 -0.5139 24 1 1.6084 2.0284 0.5139 25 1 3.1499 1.1385 0.5139 26 1 3.8216 4.0839 -3.0898 27 1 0.6003 -2.5082 -0.7569 28 1 3.2832 -3.5265 -0.4296 29 1 1.8212 -4.6039 -0.4045 30 1 3.0570 -3.0114 1.9557 31 1 1.1585 -5.3958 2.3327 32 1 3.9297 -4.5656 3.5441 33 1 2.8478 -5.9317 4.1478 34 1 3.0152 -7.0650 1.8847 35 1 4.0973 -5.6991 1.2808 36 1 0.0633 -3.5915 1.3758 37 1 0.7895 -2.0917 2.0982 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714424758.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:57 Heat of formation + Delta-G solvation = 8.085428 kcal Electronic energy + Delta-G solvation = -17006.277742 eV Core-core repulsion = 14364.144484 eV Total energy + Delta-G solvation = -2642.133258 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.23270 -37.93973 -35.66926 -34.80007 -32.49186 -28.83829 -26.65184 -25.75599 -25.45994 -22.88668 -22.36140 -20.95198 -19.86563 -17.77859 -16.93445 -16.51268 -15.80129 -15.31464 -15.04493 -14.40202 -14.30948 -13.50332 -13.07678 -12.63571 -12.51017 -12.35126 -12.22087 -11.95740 -11.89610 -11.57942 -11.46189 -10.97767 -10.77932 -10.72186 -10.52045 -10.43346 -10.14537 -9.87849 -9.66213 -9.52067 -8.92270 -8.57755 -7.66582 -6.07502 -4.06121 3.30047 3.34432 3.36050 3.37805 3.72437 3.86480 4.40713 4.54914 4.67346 4.77659 4.92544 4.99570 5.04793 5.19148 5.25560 5.43297 5.49566 5.57689 5.68926 5.75477 5.81282 5.84752 5.90526 5.95939 6.07740 6.12846 6.21370 6.30502 6.35377 6.56660 6.73325 6.96728 7.37435 7.62624 8.29551 8.48781 8.94900 9.03667 9.52959 11.06007 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.038787 B = 0.005525 C = 0.005335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.713234 B = 5066.244003 C = 5247.218365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.596 5.596 3 C 0.215 3.785 4 C -0.528 4.528 5 H 0.074 0.926 6 C 0.072 3.928 7 N -0.898 5.898 8 Si 0.877 3.123 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.524 3.476 13 O -0.540 6.540 14 C -0.138 4.138 15 C -0.113 4.113 16 C -0.080 4.080 17 C -0.138 4.138 18 C -0.184 4.184 19 C -0.179 4.179 20 C -0.115 4.115 21 H 0.044 0.956 22 H 0.074 0.926 23 H 0.061 0.939 24 H 0.029 0.971 25 H 0.036 0.964 26 H 0.264 0.736 27 H 0.096 0.904 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.102 0.898 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.740 -14.709 10.464 19.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.328 5.328 3 C 0.095 3.905 4 C -0.567 4.567 5 H 0.092 0.908 6 C -0.130 4.130 7 N -0.537 5.537 8 Si 0.704 3.296 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.191 1.191 12 C 0.311 3.689 13 O -0.417 6.417 14 C -0.160 4.160 15 C -0.150 4.150 16 C -0.098 4.098 17 C -0.157 4.157 18 C -0.221 4.221 19 C -0.216 4.216 20 C -0.153 4.153 21 H 0.063 0.937 22 H 0.093 0.907 23 H 0.080 0.920 24 H 0.047 0.953 25 H 0.054 0.946 26 H 0.074 0.926 27 H 0.114 0.886 28 H 0.099 0.901 29 H 0.102 0.898 30 H 0.113 0.887 31 H 0.120 0.880 32 H 0.112 0.888 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.114 0.886 36 H 0.105 0.895 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.017 -14.522 10.354 18.822 hybrid contribution 0.209 0.714 0.486 0.888 sum -5.808 -13.808 10.839 18.490 Atomic orbital electron populations 1.21659 0.80969 1.02908 1.00382 1.47788 1.06282 1.07016 1.71676 1.19658 0.92430 0.80134 0.98327 1.21339 1.36941 1.07105 0.91297 0.90798 1.24861 0.95243 0.97346 0.95576 1.69896 1.41534 1.23576 1.18665 0.86841 0.80125 0.79733 0.82942 1.19908 1.21051 1.19081 1.19820 0.87690 0.84531 0.76880 1.90645 1.13895 1.87096 1.50061 1.22442 0.99851 0.94075 0.99615 1.22789 1.00800 0.95765 0.95668 1.22159 0.98137 0.93877 0.95676 1.22299 0.94939 0.96218 1.02203 1.23000 1.02932 1.03813 0.92352 1.22907 1.01690 0.97494 0.99482 1.22918 0.97216 0.99901 0.95245 0.93740 0.90746 0.92027 0.95288 0.94631 0.92571 0.88598 0.90071 0.89824 0.88746 0.87982 0.88823 0.89242 0.89179 0.88636 0.89475 0.91250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.33 10.25 59.85 0.61 1.95 16 2 N -0.60 -12.55 2.86 -182.96 -0.52 -13.08 16 3 C 0.22 5.38 4.23 -5.19 -0.02 5.36 16 4 C -0.53 -15.47 9.94 -34.44 -0.34 -15.81 16 5 H 0.07 2.37 8.06 -52.49 -0.42 1.95 16 6 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 7 N -0.90 -28.03 13.96 55.43 0.77 -27.26 16 8 Si 0.88 21.84 27.47 -169.99 -4.67 17.18 16 9 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 10 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 12 C 0.52 10.87 6.94 -10.99 -0.08 10.80 16 13 O -0.54 -13.47 15.34 5.56 0.09 -13.38 16 14 C -0.14 -2.07 3.16 -90.86 -0.29 -2.36 16 15 C -0.11 -1.56 6.82 -25.92 -0.18 -1.73 16 16 C -0.08 -1.04 3.54 -89.80 -0.32 -1.36 16 17 C -0.14 -1.46 5.55 -90.62 -0.50 -1.96 16 18 C -0.18 -1.84 10.22 -26.73 -0.27 -2.12 16 19 C -0.18 -1.78 10.05 -26.73 -0.27 -2.05 16 20 C -0.12 -1.39 7.20 -25.82 -0.19 -1.57 16 21 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 23 H 0.06 0.81 6.21 -51.93 -0.32 0.49 16 24 H 0.03 0.69 7.13 -51.93 -0.37 0.32 16 25 H 0.04 0.95 6.85 -51.93 -0.36 0.59 16 26 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 27 H 0.10 1.28 6.95 -51.93 -0.36 0.92 16 28 H 0.08 1.33 7.43 -51.93 -0.39 0.94 16 29 H 0.08 0.96 8.10 -51.93 -0.42 0.54 16 30 H 0.09 1.46 8.02 -51.93 -0.42 1.04 16 31 H 0.10 0.95 7.97 -51.93 -0.41 0.53 16 32 H 0.09 1.00 8.13 -51.93 -0.42 0.58 16 33 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.09 0.83 7.98 -51.93 -0.41 0.42 16 37 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 LS Contribution 303.59 15.07 4.58 4.58 Total: -1.00 -33.58 303.59 -7.70 -41.28 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -6.00 Total: -0.48 kcal Atomic # 6 Polarization: -6.89 SS G_CDS: -1.94 Total: -8.83 kcal Atomic # 7 Polarization: -40.59 SS G_CDS: 0.25 Total: -40.34 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: 0.09 Total: -13.38 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.67 Total: 17.18 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -33.58 -7.70 -41.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714424758.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.365 kcal (2) G-P(sol) polarization free energy of solvation -33.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds