Wall clock time and date at job start Mon Mar 30 2020 03:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46505 * 119.99983 * 2 1 4 4 C 1.50697 * 109.47213 * 269.99986 * 3 2 1 5 5 H 1.08000 * 120.00123 * 0.02562 * 4 3 2 6 6 C 1.37879 * 120.00022 * 179.97438 * 4 3 2 7 7 N 1.31509 * 120.00085 * 180.02562 * 6 4 3 8 8 Si 1.86805 * 119.99848 * 0.02562 * 6 4 3 9 9 H 1.48498 * 109.46848 * 89.99668 * 8 6 4 10 10 H 1.48498 * 109.47146 * 209.99815 * 8 6 4 11 11 H 1.48498 * 109.46814 * 329.99778 * 8 6 4 12 12 C 1.34774 * 120.00343 * 180.02562 * 2 1 3 13 13 O 1.21277 * 120.00187 * 179.97438 * 12 2 1 14 14 C 1.50697 * 119.99787 * 0.02562 * 12 2 1 15 15 C 1.53786 * 113.61613 * 180.02562 * 14 12 2 16 16 C 1.53781 * 87.17350 * 89.15662 * 15 14 12 17 17 C 1.53003 * 113.61480 * 139.93948 * 16 15 14 18 18 C 1.53000 * 117.49832 * 128.62115 * 17 16 15 19 19 C 1.53002 * 60.00086 * 252.51374 * 18 17 16 20 20 C 1.53782 * 87.08260 * 25.39213 * 16 15 14 21 21 H 1.08994 * 109.46796 * 270.00009 * 1 2 3 22 22 H 1.08994 * 109.47275 * 29.99974 * 1 2 3 23 23 H 1.08996 * 109.46637 * 149.99842 * 1 2 3 24 24 H 1.09003 * 109.46840 * 30.00242 * 3 2 1 25 25 H 1.08995 * 109.47077 * 149.99676 * 3 2 1 26 26 H 0.96998 * 120.00138 * 180.02562 * 7 6 4 27 27 H 1.09000 * 112.91063 * 48.74933 * 14 12 2 28 28 H 1.09002 * 113.61357 * 334.56579 * 15 14 12 29 29 H 1.09002 * 113.61608 * 203.74741 * 15 14 12 30 30 H 1.08997 * 113.61223 * 270.84552 * 16 15 14 31 31 H 1.08996 * 115.54886 * 274.32921 * 17 16 15 32 32 H 1.09002 * 117.49568 * 0.02562 * 18 17 16 33 33 H 1.08994 * 117.49607 * 145.01899 * 18 17 16 34 34 H 1.09002 * 117.49534 * 252.51551 * 19 18 17 35 35 H 1.08992 * 117.49999 * 107.49038 * 19 18 17 36 36 H 1.08997 * 113.61668 * 89.11298 * 20 16 15 37 37 H 1.08998 * 113.61674 * 219.93807 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0975 1.0963 -2.2417 6 6 3.1260 2.8781 -1.6727 7 7 3.3448 3.2580 -2.9126 8 14 3.7330 3.9293 -0.2528 9 1 5.1065 3.5081 0.1231 10 1 3.7478 5.3561 -0.6642 11 1 2.8270 3.7592 0.9115 12 6 2.1390 -1.1671 -0.0005 13 8 3.3517 -1.1671 -0.0010 14 6 1.3855 -2.4722 -0.0017 15 6 2.2978 -3.7103 -0.0015 16 6 2.2698 -3.6365 1.5342 17 6 2.1687 -5.0046 2.2118 18 6 3.1876 -5.3278 3.3065 19 6 3.2886 -6.0114 1.9413 20 6 0.9183 -2.9159 1.3966 21 1 -0.3633 0.0000 1.0276 22 1 -0.3633 0.8899 -0.5138 23 1 -0.3632 -0.8900 -0.5139 24 1 1.6084 2.0284 0.5139 25 1 3.1499 1.1385 0.5139 26 1 3.8216 4.0839 -3.0898 27 1 0.6003 -2.5082 -0.7569 28 1 3.2832 -3.5265 -0.4296 29 1 1.8212 -4.6039 -0.4045 30 1 3.0570 -3.0114 1.9557 31 1 1.1585 -5.3958 2.3327 32 1 3.9297 -4.5656 3.5441 33 1 2.8478 -5.9317 4.1478 34 1 3.0152 -7.0650 1.8847 35 1 4.0973 -5.6991 1.2808 36 1 0.0633 -3.5915 1.3758 37 1 0.7895 -2.0917 2.0982 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714424758.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:57 Heat of formation + Delta-G solvation = -13.326710 kcal Electronic energy + Delta-G solvation = -17007.206242 eV Core-core repulsion = 14364.144484 eV Total energy + Delta-G solvation = -2643.061758 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.55195 -39.20772 -36.80028 -36.42130 -34.68792 -30.77473 -27.91084 -27.19354 -26.57408 -24.62345 -23.15172 -22.24234 -21.00155 -19.22939 -19.16157 -17.87974 -17.12405 -16.68518 -16.49913 -15.85502 -15.69667 -15.00621 -14.58628 -14.32298 -13.91949 -13.67487 -13.56746 -13.27129 -13.21668 -13.03634 -12.77094 -12.45850 -12.35527 -12.07587 -11.84921 -11.76113 -11.61258 -11.50562 -10.86071 -10.80959 -10.60958 -10.52983 -9.39875 -8.36740 -6.42126 1.30238 1.34601 1.43220 1.77764 2.28636 2.33429 2.90886 2.97522 3.59468 3.60751 3.71802 3.89526 3.94741 4.19536 4.28892 4.33045 4.51404 4.57532 4.65021 4.76284 4.80739 4.83439 4.86150 4.91004 4.93171 5.02008 5.07902 5.16500 5.20770 5.31504 5.41826 5.43372 5.56540 5.62281 6.21667 6.58925 6.70958 7.18985 7.43258 8.80440 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.038787 B = 0.005525 C = 0.005335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.713234 B = 5066.244003 C = 5247.218365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.606 5.606 3 C 0.223 3.777 4 C -0.538 4.538 5 H 0.027 0.973 6 C 0.011 3.989 7 N -0.945 5.945 8 Si 0.949 3.051 9 H -0.277 1.277 10 H -0.272 1.272 11 H -0.238 1.238 12 C 0.511 3.489 13 O -0.597 6.597 14 C -0.139 4.139 15 C -0.111 4.111 16 C -0.082 4.082 17 C -0.135 4.135 18 C -0.188 4.188 19 C -0.179 4.179 20 C -0.093 4.093 21 H 0.079 0.921 22 H 0.064 0.936 23 H 0.090 0.910 24 H 0.051 0.949 25 H 0.015 0.985 26 H 0.269 0.731 27 H 0.121 0.879 28 H 0.042 0.958 29 H 0.117 0.883 30 H 0.056 0.944 31 H 0.129 0.871 32 H 0.076 0.924 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.077 0.923 36 H 0.130 0.870 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.076 -15.980 12.674 22.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.337 5.337 3 C 0.100 3.900 4 C -0.577 4.577 5 H 0.045 0.955 6 C -0.187 4.187 7 N -0.585 5.585 8 Si 0.772 3.228 9 H -0.203 1.203 10 H -0.197 1.197 11 H -0.161 1.161 12 C 0.300 3.700 13 O -0.479 6.479 14 C -0.160 4.160 15 C -0.149 4.149 16 C -0.101 4.101 17 C -0.153 4.153 18 C -0.225 4.225 19 C -0.216 4.216 20 C -0.131 4.131 21 H 0.098 0.902 22 H 0.083 0.917 23 H 0.109 0.891 24 H 0.069 0.931 25 H 0.033 0.967 26 H 0.078 0.922 27 H 0.138 0.862 28 H 0.061 0.939 29 H 0.135 0.865 30 H 0.074 0.926 31 H 0.147 0.853 32 H 0.095 0.905 33 H 0.128 0.872 34 H 0.129 0.871 35 H 0.096 0.904 36 H 0.148 0.852 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.412 -15.809 12.571 21.880 hybrid contribution 0.959 1.062 -0.302 1.463 sum -7.453 -14.747 12.269 20.580 Atomic orbital electron populations 1.21976 0.77523 1.03923 1.02934 1.47939 1.08527 1.05826 1.71378 1.19327 0.92643 0.82713 0.95285 1.21565 1.36959 1.06773 0.92373 0.95479 1.25871 0.95214 0.98924 0.98702 1.70047 1.42667 1.24522 1.21305 0.85695 0.79486 0.77827 0.79817 1.20320 1.19693 1.16099 1.20938 0.87479 0.86298 0.75252 1.90608 1.16691 1.88096 1.52482 1.22441 1.00095 0.90795 1.02717 1.22856 0.98983 0.96520 0.96522 1.22033 0.97945 0.95150 0.94970 1.22295 0.96312 0.94702 1.01975 1.23053 1.02581 1.03728 0.93092 1.22952 1.01105 0.98545 0.99039 1.22952 0.97720 1.00063 0.92351 0.90237 0.91738 0.89132 0.93131 0.96682 0.92193 0.86158 0.93886 0.86472 0.92571 0.85275 0.90506 0.87213 0.87050 0.90387 0.85170 0.91530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.27 10.25 127.77 1.31 3.58 16 2 N -0.61 -25.37 2.86 -851.15 -2.43 -27.80 16 3 C 0.22 11.23 4.23 85.63 0.36 11.59 16 4 C -0.54 -32.61 9.94 25.60 0.25 -32.35 16 5 H 0.03 1.83 8.06 -2.91 -0.02 1.81 16 6 C 0.01 0.66 5.47 84.66 0.46 1.12 16 7 N -0.95 -60.86 13.96 21.45 0.30 -60.56 16 8 Si 0.95 45.37 27.47 68.60 1.88 47.26 16 9 H -0.28 -13.38 7.11 99.48 0.71 -12.68 16 10 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 11 H -0.24 -10.20 6.54 99.48 0.65 -9.55 16 12 C 0.51 21.46 6.94 87.66 0.61 22.07 16 13 O -0.60 -31.43 15.34 -3.02 -0.05 -31.48 16 14 C -0.14 -3.92 3.16 -10.95 -0.03 -3.96 16 15 C -0.11 -2.97 6.82 31.12 0.21 -2.76 16 16 C -0.08 -2.03 3.54 -10.27 -0.04 -2.06 16 17 C -0.14 -2.45 5.55 -10.79 -0.06 -2.51 16 18 C -0.19 -3.44 10.22 30.60 0.31 -3.12 16 19 C -0.18 -3.24 10.05 30.60 0.31 -2.93 16 20 C -0.09 -1.92 7.20 31.18 0.22 -1.69 16 21 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 22 H 0.06 2.00 8.07 -2.39 -0.02 1.98 16 23 H 0.09 2.08 6.21 -2.39 -0.01 2.07 16 24 H 0.05 2.32 7.13 -2.39 -0.02 2.30 16 25 H 0.02 0.82 6.85 -2.39 -0.02 0.80 16 26 H 0.27 16.04 8.31 -92.71 -0.77 15.27 16 27 H 0.12 2.80 6.95 -2.39 -0.02 2.79 16 28 H 0.04 1.47 7.43 -2.39 -0.02 1.46 16 29 H 0.12 2.33 8.10 -2.39 -0.02 2.31 16 30 H 0.06 1.81 8.02 -2.39 -0.02 1.79 16 31 H 0.13 1.72 7.97 -2.39 -0.02 1.70 16 32 H 0.08 1.65 8.13 -2.39 -0.02 1.63 16 33 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.11 1.54 8.14 -2.39 -0.02 1.53 16 35 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.13 1.66 7.98 -2.39 -0.02 1.64 16 37 H 0.07 1.45 8.10 -2.39 -0.02 1.43 16 Total: -1.00 -78.65 303.59 4.60 -74.05 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: 0.98 Total: 11.57 kcal Atomic # 6 Polarization: -16.96 SS G_CDS: 3.92 Total: -13.04 kcal Atomic # 7 Polarization: -86.22 SS G_CDS: -2.13 Total: -88.36 kcal Atomic # 8 Polarization: -31.43 SS G_CDS: -0.05 Total: -31.48 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 1.88 Total: 47.26 kcal Total: -78.65 4.60 -74.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714424758.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.719 kcal (2) G-P(sol) polarization free energy of solvation -78.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds