Wall clock time and date at job start Mon Mar 30 2020 03:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 115.54874 * 2 1 4 4 C 1.53072 * 117.53196 * 214.28510 * 2 1 3 5 5 C 1.52993 * 59.98729 * 252.53007 * 4 2 1 6 6 H 1.09008 * 117.50291 * 252.50231 * 5 4 2 7 7 C 1.52998 * 117.50111 * 107.50070 * 5 4 2 8 8 H 1.09008 * 115.54899 * 325.58596 * 7 5 4 9 9 C 1.52999 * 117.52082 * 179.88383 * 7 5 4 10 10 C 1.52998 * 59.99998 * 252.51795 * 9 7 5 11 11 H 1.09005 * 117.51838 * 252.52005 * 10 9 7 12 12 C 1.52999 * 117.49692 * 107.48787 * 10 9 7 13 13 N 1.46498 * 109.46823 * 116.37700 * 12 10 9 14 14 C 1.46496 * 120.00244 * 269.99666 * 13 12 10 15 15 C 1.34783 * 119.99903 * 90.00354 * 13 12 10 16 16 O 1.21683 * 119.99991 * 359.97438 * 15 13 12 17 17 C 1.46373 * 119.99851 * 179.97438 * 15 13 12 18 18 H 1.08002 * 120.00452 * 0.02562 * 17 15 13 19 19 C 1.40050 * 119.99716 * 179.71969 * 17 15 13 20 20 N 1.30674 * 120.00151 * 0.28083 * 19 17 15 21 21 Si 1.86803 * 119.99913 * 180.27503 * 19 17 15 22 22 H 1.48504 * 109.46768 * 60.00340 * 21 19 17 23 23 H 1.48504 * 109.47036 * 180.02562 * 21 19 17 24 24 H 1.48493 * 109.47374 * 300.00617 * 21 19 17 25 25 H 1.09004 * 109.47012 * 274.32780 * 1 2 3 26 26 H 1.08999 * 109.47531 * 34.32849 * 1 2 3 27 27 H 1.09001 * 109.47175 * 154.33496 * 1 2 3 28 28 H 1.09001 * 117.49382 * 145.04042 * 4 2 1 29 29 H 1.08996 * 117.51637 * 0.02562 * 4 2 1 30 30 H 1.09002 * 117.49610 * 145.03105 * 9 7 5 31 31 H 1.08997 * 117.50161 * 0.02562 * 9 7 5 32 32 H 1.08994 * 109.47204 * 356.37857 * 12 10 9 33 33 H 1.08999 * 109.47020 * 236.37397 * 12 10 9 34 34 H 1.08997 * 109.47506 * 270.00400 * 14 13 12 35 35 H 1.09002 * 109.46896 * 30.00579 * 14 13 12 36 36 H 1.09003 * 109.47023 * 150.00172 * 14 13 12 37 37 H 0.96996 * 120.00331 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2376 -1.1215 -0.7646 5 6 2.2365 -1.1208 0.7653 6 1 3.1712 -0.8745 1.2692 7 6 1.3589 -2.1560 1.4717 8 1 0.4235 -2.4012 0.9686 9 6 1.3596 -2.1575 3.0017 10 6 2.0654 -3.2779 2.2353 11 1 1.5949 -4.2612 2.2343 12 6 3.5954 -3.2783 2.2346 13 7 4.0836 -4.4835 2.9095 14 6 4.3285 -4.4660 4.3537 15 6 4.3076 -5.6083 2.2015 16 8 4.1039 -5.6230 1.0020 17 6 4.7960 -6.8123 2.8757 18 1 4.9764 -6.7994 3.9405 19 6 5.0232 -7.9828 2.1411 20 7 4.8045 -7.9985 0.8529 21 14 5.6391 -9.5215 3.0028 22 1 4.6597 -9.9335 4.0402 23 1 5.7987 -10.6144 2.0101 24 1 6.9490 -9.2397 3.6429 25 1 -0.3633 0.0776 1.0248 26 1 -0.3634 0.8486 -0.5795 27 1 -0.3633 -0.9263 -0.4451 28 1 3.1728 -0.8755 -1.2674 29 1 1.6131 -1.8594 -1.2682 30 1 0.4247 -2.4036 3.5051 31 1 1.9850 -1.4205 3.5054 32 1 3.9592 -2.3952 2.7597 33 1 3.9582 -3.2652 1.2069 34 1 5.3581 -4.1631 4.5441 35 1 3.6480 -3.7594 4.8290 36 1 4.1614 -5.4625 4.7626 37 1 4.9622 -8.8091 0.3440 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716577665.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:12 Heat of formation + Delta-G solvation = 5.560325 kcal Electronic energy + Delta-G solvation = -16874.184055 eV Core-core repulsion = 14231.941300 eV Total energy + Delta-G solvation = -2642.242755 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.96270 -37.44538 -35.55947 -33.41854 -32.39117 -28.46468 -27.89871 -25.88882 -24.34814 -23.40939 -21.49271 -20.57888 -19.39675 -18.07820 -16.36565 -16.01596 -15.50282 -15.09111 -14.24777 -14.13568 -13.69179 -13.31109 -13.10463 -12.51621 -12.36835 -12.30213 -11.72100 -11.50668 -11.38700 -11.34771 -11.15354 -11.10714 -10.90427 -10.80656 -10.61300 -10.25997 -10.11624 -9.93477 -9.31862 -9.02448 -8.81248 -7.52813 -7.14710 -6.15387 -4.60816 3.17039 3.21944 3.23658 3.70186 4.11589 4.36878 4.58332 4.65511 4.72394 4.89136 5.08374 5.31954 5.32731 5.46499 5.53067 5.59694 5.79969 5.83701 5.86737 5.88525 5.98779 6.03883 6.04858 6.10766 6.24173 6.34719 6.36320 6.49981 6.51892 6.59437 6.61445 6.83955 7.47683 7.70087 8.19187 8.41044 9.05676 9.48701 10.62311 10.81516 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.041651 B = 0.005354 C = 0.005005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.098076 B = 5228.196926 C = 5592.842093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.158 4.158 3 H 0.099 0.901 4 C -0.170 4.170 5 C -0.111 4.111 6 H 0.102 0.898 7 C -0.121 4.121 8 H 0.098 0.902 9 C -0.179 4.179 10 C -0.140 4.140 11 H 0.104 0.896 12 C 0.161 3.839 13 N -0.648 5.648 14 C 0.103 3.897 15 C 0.556 3.444 16 O -0.575 6.575 17 C -0.545 4.545 18 H 0.071 0.929 19 C 0.088 3.912 20 N -0.768 5.768 21 Si 0.906 3.094 22 H -0.268 1.268 23 H -0.281 1.281 24 H -0.268 1.268 25 H 0.059 0.941 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.050 0.950 33 H 0.077 0.923 34 H 0.029 0.971 35 H 0.040 0.960 36 H 0.070 0.930 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.535 11.917 2.932 13.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.177 4.177 3 H 0.117 0.883 4 C -0.207 4.207 5 C -0.129 4.129 6 H 0.121 0.879 7 C -0.139 4.139 8 H 0.117 0.883 9 C -0.216 4.216 10 C -0.160 4.160 11 H 0.122 0.878 12 C 0.036 3.964 13 N -0.385 5.385 14 C -0.041 4.041 15 C 0.361 3.639 16 O -0.457 6.457 17 C -0.582 4.582 18 H 0.089 0.911 19 C -0.132 4.132 20 N -0.397 5.397 21 Si 0.730 3.270 22 H -0.193 1.193 23 H -0.206 1.206 24 H -0.193 1.193 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.110 0.890 29 H 0.113 0.887 30 H 0.105 0.895 31 H 0.108 0.892 32 H 0.069 0.931 33 H 0.095 0.905 34 H 0.047 0.953 35 H 0.059 0.941 36 H 0.088 0.912 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.630 11.791 2.090 13.233 hybrid contribution 0.282 -0.755 0.577 0.991 sum -5.348 11.036 2.666 12.550 Atomic orbital electron populations 1.21307 0.93168 1.01455 1.01615 1.22357 0.95286 0.94180 1.05837 0.88317 1.23077 1.02366 1.00891 0.94390 1.21740 0.99667 0.97925 0.93588 0.87950 1.21699 0.99955 0.99268 0.93008 0.88343 1.23059 1.02507 1.02543 0.93512 1.23015 0.96958 0.93928 1.02074 0.87795 1.20522 0.89536 0.87669 0.98652 1.47975 1.71321 1.12013 1.07236 1.21365 0.98195 1.01702 0.82850 1.18244 0.77662 0.81673 0.86297 1.90597 1.56690 1.83422 1.15027 1.20990 1.47121 0.94732 0.95318 0.91082 1.25732 0.93409 0.99593 0.94478 1.70014 1.35450 1.27572 1.06644 0.86472 0.79866 0.80992 0.79648 1.19300 1.20585 1.19282 0.92243 0.92785 0.92590 0.88967 0.88723 0.89514 0.89248 0.93130 0.90452 0.95267 0.94092 0.91154 0.92123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.23 9.05 37.16 0.34 -0.90 16 2 C -0.16 -1.84 6.41 -90.58 -0.58 -2.42 16 3 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 4 C -0.17 -2.27 9.90 -26.70 -0.26 -2.53 16 5 C -0.11 -1.53 5.09 -90.62 -0.46 -1.99 16 6 H 0.10 1.42 7.35 -51.92 -0.38 1.03 16 7 C -0.12 -1.80 5.18 -90.62 -0.47 -2.27 16 8 H 0.10 1.44 7.19 -51.92 -0.37 1.07 16 9 C -0.18 -2.54 9.90 -26.73 -0.26 -2.80 16 10 C -0.14 -2.53 6.01 -90.62 -0.54 -3.07 16 11 H 0.10 2.18 8.14 -51.93 -0.42 1.76 16 12 C 0.16 3.22 4.49 -4.04 -0.02 3.20 16 13 N -0.65 -15.07 2.87 -183.25 -0.53 -15.60 16 14 C 0.10 1.97 10.15 59.84 0.61 2.57 16 15 C 0.56 16.05 7.61 -12.98 -0.10 15.95 16 16 O -0.57 -18.76 14.60 5.20 0.08 -18.69 16 17 C -0.54 -15.49 8.74 -35.63 -0.31 -15.80 16 18 H 0.07 1.84 6.00 -52.49 -0.31 1.53 16 19 C 0.09 2.46 5.50 -17.36 -0.10 2.36 16 20 N -0.77 -23.21 11.83 55.55 0.66 -22.55 16 21 Si 0.91 20.24 29.56 -169.99 -5.02 15.21 16 22 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 23 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 24 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.60 7.40 -51.93 -0.38 0.22 16 28 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.09 1.31 8.05 -51.93 -0.42 0.89 16 30 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.09 1.17 8.03 -51.93 -0.42 0.76 16 32 H 0.05 0.87 7.55 -51.93 -0.39 0.48 16 33 H 0.08 1.75 7.30 -51.93 -0.38 1.37 16 34 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.04 0.65 8.07 -51.93 -0.42 0.23 16 36 H 0.07 1.38 6.09 -51.93 -0.32 1.06 16 37 H 0.27 7.37 8.29 -40.82 -0.34 7.03 16 LS Contribution 306.54 15.07 4.62 4.62 Total: -1.00 -33.19 306.54 -8.25 -41.44 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -5.89 Total: 3.26 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: -2.17 Total: -7.70 kcal Atomic # 7 Polarization: -38.27 SS G_CDS: 0.13 Total: -38.14 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: 0.08 Total: -18.69 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -33.19 -8.25 -41.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716577665.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.000 kcal (2) G-P(sol) polarization free energy of solvation -33.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds