Wall clock time and date at job start Mon Mar 30 2020 03:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 115.54874 * 2 1 4 4 C 1.53072 * 117.53196 * 214.28510 * 2 1 3 5 5 C 1.52993 * 59.98729 * 252.53007 * 4 2 1 6 6 H 1.09008 * 117.50291 * 252.50231 * 5 4 2 7 7 C 1.52998 * 117.50111 * 107.50070 * 5 4 2 8 8 H 1.09008 * 115.54899 * 325.58596 * 7 5 4 9 9 C 1.52999 * 117.52082 * 179.88383 * 7 5 4 10 10 C 1.52998 * 59.99998 * 252.51795 * 9 7 5 11 11 H 1.09005 * 117.51838 * 252.52005 * 10 9 7 12 12 C 1.52999 * 117.49692 * 107.48787 * 10 9 7 13 13 N 1.46498 * 109.46823 * 116.37700 * 12 10 9 14 14 C 1.46496 * 120.00244 * 269.99666 * 13 12 10 15 15 C 1.34783 * 119.99903 * 90.00354 * 13 12 10 16 16 O 1.21683 * 119.99991 * 359.97438 * 15 13 12 17 17 C 1.46373 * 119.99851 * 179.97438 * 15 13 12 18 18 H 1.08002 * 120.00452 * 0.02562 * 17 15 13 19 19 C 1.40050 * 119.99716 * 179.71969 * 17 15 13 20 20 N 1.30674 * 120.00151 * 0.28083 * 19 17 15 21 21 Si 1.86803 * 119.99913 * 180.27503 * 19 17 15 22 22 H 1.48504 * 109.46768 * 60.00340 * 21 19 17 23 23 H 1.48504 * 109.47036 * 180.02562 * 21 19 17 24 24 H 1.48493 * 109.47374 * 300.00617 * 21 19 17 25 25 H 1.09004 * 109.47012 * 274.32780 * 1 2 3 26 26 H 1.08999 * 109.47531 * 34.32849 * 1 2 3 27 27 H 1.09001 * 109.47175 * 154.33496 * 1 2 3 28 28 H 1.09001 * 117.49382 * 145.04042 * 4 2 1 29 29 H 1.08996 * 117.51637 * 0.02562 * 4 2 1 30 30 H 1.09002 * 117.49610 * 145.03105 * 9 7 5 31 31 H 1.08997 * 117.50161 * 0.02562 * 9 7 5 32 32 H 1.08994 * 109.47204 * 356.37857 * 12 10 9 33 33 H 1.08999 * 109.47020 * 236.37397 * 12 10 9 34 34 H 1.08997 * 109.47506 * 270.00400 * 14 13 12 35 35 H 1.09002 * 109.46896 * 30.00579 * 14 13 12 36 36 H 1.09003 * 109.47023 * 150.00172 * 14 13 12 37 37 H 0.96996 * 120.00331 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2376 -1.1215 -0.7646 5 6 2.2365 -1.1208 0.7653 6 1 3.1712 -0.8745 1.2692 7 6 1.3589 -2.1560 1.4717 8 1 0.4235 -2.4012 0.9686 9 6 1.3596 -2.1575 3.0017 10 6 2.0654 -3.2779 2.2353 11 1 1.5949 -4.2612 2.2343 12 6 3.5954 -3.2783 2.2346 13 7 4.0836 -4.4835 2.9095 14 6 4.3285 -4.4660 4.3537 15 6 4.3076 -5.6083 2.2015 16 8 4.1039 -5.6230 1.0020 17 6 4.7960 -6.8123 2.8757 18 1 4.9764 -6.7994 3.9405 19 6 5.0232 -7.9828 2.1411 20 7 4.8045 -7.9985 0.8529 21 14 5.6391 -9.5215 3.0028 22 1 4.6597 -9.9335 4.0402 23 1 5.7987 -10.6144 2.0101 24 1 6.9490 -9.2397 3.6429 25 1 -0.3633 0.0776 1.0248 26 1 -0.3634 0.8486 -0.5795 27 1 -0.3633 -0.9263 -0.4451 28 1 3.1728 -0.8755 -1.2674 29 1 1.6131 -1.8594 -1.2682 30 1 0.4247 -2.4036 3.5051 31 1 1.9850 -1.4205 3.5054 32 1 3.9592 -2.3952 2.7597 33 1 3.9582 -3.2652 1.2069 34 1 5.3581 -4.1631 4.5441 35 1 3.6480 -3.7594 4.8290 36 1 4.1614 -5.4625 4.7626 37 1 4.9622 -8.8091 0.3440 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716577665.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:12 Heat of formation + Delta-G solvation = -14.490105 kcal Electronic energy + Delta-G solvation = -16875.053507 eV Core-core repulsion = 14231.941300 eV Total energy + Delta-G solvation = -2643.112207 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.31228 -39.21967 -36.94160 -35.27078 -34.57261 -29.66658 -29.34843 -27.82046 -26.14015 -24.56389 -22.69677 -21.92451 -21.07027 -19.41603 -18.37093 -17.62574 -17.23055 -16.37714 -16.05639 -15.75820 -15.30539 -14.65591 -14.16771 -13.99059 -13.73604 -13.42521 -13.35488 -13.28279 -13.07051 -13.00148 -12.71468 -12.44236 -12.35549 -12.18320 -12.07454 -11.96201 -11.79558 -11.08218 -10.90879 -10.53297 -10.21083 -9.74501 -9.04161 -8.27035 -6.83034 1.39239 1.43075 1.54419 2.24425 2.47443 2.56904 2.93288 3.22562 3.54951 3.65913 3.86648 3.95255 4.09818 4.25620 4.30595 4.38326 4.45724 4.51361 4.62171 4.78028 4.84263 4.90512 4.94401 4.94860 5.00987 5.03818 5.07219 5.21520 5.24090 5.30817 5.37358 5.37870 5.48409 5.79374 6.16688 6.46397 6.88741 7.45310 8.50214 8.69674 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.041651 B = 0.005354 C = 0.005005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.098076 B = 5228.196926 C = 5592.842093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.130 4.130 3 H 0.119 0.881 4 C -0.190 4.190 5 C -0.128 4.128 6 H 0.103 0.897 7 C -0.111 4.111 8 H 0.098 0.902 9 C -0.142 4.142 10 C -0.175 4.175 11 H 0.062 0.938 12 C 0.167 3.833 13 N -0.651 5.651 14 C 0.101 3.899 15 C 0.536 3.464 16 O -0.630 6.630 17 C -0.572 4.572 18 H 0.093 0.907 19 C 0.027 3.973 20 N -0.824 5.824 21 Si 0.996 3.004 22 H -0.254 1.254 23 H -0.275 1.275 24 H -0.253 1.253 25 H 0.066 0.934 26 H 0.072 0.928 27 H 0.046 0.954 28 H 0.094 0.906 29 H 0.081 0.919 30 H 0.103 0.897 31 H 0.111 0.889 32 H 0.085 0.915 33 H 0.038 0.962 34 H 0.044 0.956 35 H 0.077 0.923 36 H 0.061 0.939 37 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.755 13.178 5.273 15.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.148 4.148 3 H 0.137 0.863 4 C -0.227 4.227 5 C -0.146 4.146 6 H 0.121 0.879 7 C -0.129 4.129 8 H 0.116 0.884 9 C -0.179 4.179 10 C -0.195 4.195 11 H 0.081 0.919 12 C 0.043 3.957 13 N -0.387 5.387 14 C -0.042 4.042 15 C 0.342 3.658 16 O -0.517 6.517 17 C -0.608 4.608 18 H 0.111 0.889 19 C -0.187 4.187 20 N -0.453 5.453 21 Si 0.815 3.185 22 H -0.177 1.177 23 H -0.200 1.200 24 H -0.177 1.177 25 H 0.085 0.915 26 H 0.091 0.909 27 H 0.065 0.935 28 H 0.112 0.888 29 H 0.099 0.901 30 H 0.122 0.878 31 H 0.129 0.871 32 H 0.104 0.896 33 H 0.056 0.944 34 H 0.062 0.938 35 H 0.096 0.904 36 H 0.080 0.920 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.861 13.105 4.483 15.040 hybrid contribution 0.317 -1.059 -0.164 1.118 sum -5.544 12.046 4.319 13.947 Atomic orbital electron populations 1.21360 0.92121 1.01863 1.02384 1.22473 0.96005 0.93971 1.02353 0.86315 1.23121 1.02956 1.02273 0.94352 1.21770 1.00137 0.99153 0.93529 0.87888 1.21747 0.99358 0.97564 0.94277 0.88351 1.23148 1.02362 0.99470 0.92886 1.22657 0.95592 0.93653 1.07588 0.91907 1.20550 0.90948 0.87471 0.96691 1.47870 1.70338 1.11535 1.08974 1.21550 1.00078 1.02423 0.80182 1.18673 0.77544 0.83542 0.86023 1.90542 1.58954 1.84845 1.17363 1.21535 1.47408 0.95318 0.96547 0.88948 1.27018 0.92862 1.03764 0.95085 1.70204 1.36974 1.29081 1.09066 0.85106 0.79774 0.75274 0.78359 1.17747 1.20028 1.17693 0.91475 0.90888 0.93531 0.88754 0.90067 0.87839 0.87065 0.89641 0.94353 0.93773 0.90409 0.91998 0.91733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.21 9.05 71.98 0.65 -1.56 16 2 C -0.13 -2.75 6.41 -10.77 -0.07 -2.82 16 3 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 4 C -0.19 -5.08 9.90 30.62 0.30 -4.78 16 5 C -0.13 -3.40 5.09 -10.80 -0.05 -3.45 16 6 H 0.10 2.71 7.35 -2.38 -0.02 2.69 16 7 C -0.11 -3.23 5.18 -10.79 -0.06 -3.29 16 8 H 0.10 2.85 7.19 -2.38 -0.02 2.84 16 9 C -0.14 -3.65 9.90 30.59 0.30 -3.34 16 10 C -0.18 -6.41 6.01 -10.79 -0.06 -6.48 16 11 H 0.06 2.80 8.14 -2.38 -0.02 2.78 16 12 C 0.17 6.80 4.49 86.38 0.39 7.19 16 13 N -0.65 -30.77 2.87 -851.91 -2.45 -33.22 16 14 C 0.10 3.67 10.15 127.77 1.30 4.96 16 15 C 0.54 32.28 7.61 86.36 0.66 32.94 16 16 O -0.63 -43.72 14.60 -4.29 -0.06 -43.78 16 17 C -0.57 -33.10 8.74 24.83 0.22 -32.88 16 18 H 0.09 4.76 6.00 -2.91 -0.02 4.74 16 19 C 0.03 1.57 5.50 85.30 0.47 2.03 16 20 N -0.82 -51.73 11.83 21.84 0.26 -51.47 16 21 Si 1.00 41.61 29.56 68.60 2.03 43.64 16 22 H -0.25 -9.92 7.11 99.48 0.71 -9.21 16 23 H -0.28 -11.15 7.11 99.48 0.71 -10.44 16 24 H -0.25 -9.89 7.11 99.48 0.71 -9.19 16 25 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 26 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.05 0.94 7.40 -2.39 -0.02 0.93 16 28 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 29 H 0.08 2.36 8.05 -2.39 -0.02 2.34 16 30 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.11 2.43 8.03 -2.39 -0.02 2.41 16 32 H 0.09 2.81 7.55 -2.39 -0.02 2.79 16 33 H 0.04 1.83 7.30 -2.39 -0.02 1.82 16 34 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.08 2.25 8.07 -2.39 -0.02 2.23 16 36 H 0.06 2.35 6.09 -2.39 -0.01 2.33 16 37 H 0.27 15.57 8.29 -92.71 -0.77 14.80 16 Total: -1.00 -76.85 306.54 4.85 -72.00 By element: Atomic # 1 Polarization: 23.28 SS G_CDS: 1.04 Total: 24.32 kcal Atomic # 6 Polarization: -15.52 SS G_CDS: 4.04 Total: -11.48 kcal Atomic # 7 Polarization: -82.50 SS G_CDS: -2.19 Total: -84.69 kcal Atomic # 8 Polarization: -43.72 SS G_CDS: -0.06 Total: -43.78 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.64 kcal Total: -76.85 4.85 -72.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716577665.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.506 kcal (2) G-P(sol) polarization free energy of solvation -76.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds