Wall clock time and date at job start Mon Mar 30 2020 03:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.47113 * 2 1 4 4 C 1.50703 * 109.47245 * 239.99997 * 2 1 3 5 5 H 1.08005 * 119.99505 * 239.99545 * 4 2 1 6 6 C 1.37871 * 120.00085 * 60.00291 * 4 2 1 7 7 N 1.31517 * 120.00139 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99953 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47315 * 59.99563 * 8 6 4 10 10 H 1.48504 * 109.47275 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47147 * 299.99708 * 8 6 4 12 12 N 1.46496 * 109.47092 * 119.99963 * 2 1 3 13 13 C 1.34780 * 119.99868 * 275.00121 * 12 2 1 14 14 O 1.21286 * 120.00034 * 359.97438 * 13 12 2 15 15 C 1.50702 * 120.00097 * 180.27599 * 13 12 2 16 16 H 1.09007 * 115.54779 * 304.61692 * 15 13 12 17 17 C 1.52997 * 117.50247 * 158.90749 * 15 13 12 18 18 C 1.52993 * 60.00217 * 252.50838 * 17 15 13 19 19 H 1.09001 * 117.50159 * 252.50965 * 18 17 15 20 20 C 1.52999 * 117.51906 * 107.47693 * 18 17 15 21 21 H 1.09005 * 115.55054 * 13.90722 * 20 18 17 22 22 C 1.53004 * 117.50105 * 228.23562 * 20 18 17 23 23 C 1.52997 * 60.00071 * 252.50954 * 22 20 18 24 24 H 1.09000 * 117.50242 * 252.51065 * 23 22 20 25 25 C 1.53005 * 117.49882 * 107.48830 * 23 22 20 26 26 H 1.09007 * 109.47095 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47631 * 300.00430 * 1 2 3 28 28 H 1.09009 * 109.46857 * 60.00634 * 1 2 3 29 29 H 0.97000 * 120.00057 * 180.02562 * 7 6 4 30 30 H 0.96997 * 120.00598 * 95.00288 * 12 2 1 31 31 H 1.09001 * 117.49381 * 0.02562 * 17 15 13 32 32 H 1.08998 * 117.50227 * 145.01808 * 17 15 13 33 33 H 1.09001 * 117.49958 * 359.97438 * 22 20 18 34 34 H 1.09000 * 117.50051 * 144.99810 * 22 20 18 35 35 H 1.08999 * 109.47003 * 351.37660 * 25 23 22 36 36 H 1.08996 * 109.46762 * 111.37985 * 25 23 22 37 37 H 1.09000 * 109.47093 * 231.37968 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3226 -1.1196 -4.0079 9 1 1.8282 -2.5199 -4.0081 10 1 1.8271 -0.4199 -5.2205 11 1 3.8076 -1.1189 -4.0076 12 7 2.0182 -0.6906 1.1961 13 6 2.1469 -0.0182 2.3571 14 8 1.8589 1.1587 2.4115 15 6 2.6552 -0.7270 3.5861 16 1 2.1020 -1.6204 3.8760 17 6 3.2444 0.1338 4.7053 18 6 4.1653 -0.7204 3.8318 19 1 4.6056 -1.6093 4.2837 20 6 5.0439 0.0049 2.8106 21 1 5.1231 1.0842 2.9410 22 6 5.0584 -0.5368 1.3798 23 6 6.2754 -0.7359 2.2855 24 1 7.1650 -0.1440 2.0705 25 6 6.5339 -2.1453 2.8218 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 0.7082 1.1608 -3.4845 30 1 2.2490 -1.6317 1.1527 31 1 3.2640 1.2129 4.5528 32 1 3.0788 -0.1930 5.7319 33 1 4.4423 -1.4102 1.1660 34 1 5.1471 0.1860 0.5688 35 1 5.6868 -2.7872 2.5799 36 1 7.4374 -2.5481 2.3640 37 1 6.6617 -2.1047 3.9035 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717217514.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:05 Heat of formation + Delta-G solvation = -1.549914 kcal Electronic energy + Delta-G solvation = -17367.811010 eV Core-core repulsion = 14725.259932 eV Total energy + Delta-G solvation = -2642.551078 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.64236 -37.60439 -35.33587 -34.41066 -32.27434 -28.94325 -28.38280 -25.23890 -24.40759 -23.20275 -21.08345 -20.51444 -19.60859 -18.70824 -16.80622 -15.97552 -15.65002 -15.18404 -14.72569 -14.25597 -13.69583 -13.22882 -13.05629 -12.78015 -12.42300 -12.33777 -11.87701 -11.58344 -11.18898 -11.08066 -11.03393 -10.93484 -10.79029 -10.54686 -10.38091 -10.25943 -10.19526 -9.51016 -9.34725 -9.01239 -8.87778 -8.50602 -7.80305 -6.09314 -4.18165 3.26429 3.30843 3.32004 3.33183 3.84762 4.10292 4.22804 4.40621 4.82324 4.94125 5.00936 5.22880 5.23991 5.29960 5.41476 5.51221 5.59759 5.70637 5.85710 5.93258 5.97749 6.08958 6.17197 6.34497 6.40957 6.46043 6.57451 6.86896 7.01379 7.20195 7.53606 7.62473 7.74214 7.96431 8.19235 8.75554 8.83919 9.23979 9.49995 10.96658 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.024112 B = 0.007894 C = 0.006371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.949771 B = 3546.010907 C = 4393.655166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.267 3.733 3 H 0.047 0.953 4 C -0.529 4.529 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.703 5.703 13 C 0.537 3.463 14 O -0.557 6.557 15 C -0.184 4.184 16 H 0.118 0.882 17 C -0.146 4.146 18 C -0.101 4.101 19 H 0.111 0.889 20 C -0.128 4.128 21 H 0.103 0.897 22 C -0.151 4.151 23 C -0.159 4.159 24 H 0.099 0.901 25 C -0.119 4.119 26 H 0.025 0.975 27 H 0.014 0.986 28 H 0.089 0.911 29 H 0.264 0.736 30 H 0.386 0.614 31 H 0.104 0.896 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.624 -5.900 10.524 14.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.165 3.835 3 H 0.065 0.935 4 C -0.568 4.568 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.522 5.522 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.350 5.350 13 C 0.322 3.678 14 O -0.436 6.436 15 C -0.206 4.206 16 H 0.136 0.864 17 C -0.184 4.184 18 C -0.119 4.119 19 H 0.128 0.872 20 C -0.146 4.146 21 H 0.121 0.879 22 C -0.187 4.187 23 C -0.177 4.177 24 H 0.117 0.883 25 C -0.176 4.176 26 H 0.044 0.956 27 H 0.033 0.967 28 H 0.108 0.892 29 H 0.074 0.926 30 H 0.219 0.781 31 H 0.122 0.878 32 H 0.115 0.885 33 H 0.117 0.883 34 H 0.115 0.885 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.308 -4.925 10.364 13.604 hybrid contribution 0.275 -0.931 -0.921 1.338 sum 7.583 -5.857 9.443 13.452 Atomic orbital electron populations 1.22093 0.98751 0.99016 1.00820 1.18679 0.90780 0.93925 0.80072 0.93526 1.21166 1.32244 1.13068 0.90290 0.92182 1.24875 0.94879 0.94954 0.98983 1.69897 1.35923 1.22506 1.23877 0.86550 0.79181 0.79602 0.82001 1.20229 1.21191 1.20181 1.46445 1.64902 1.13361 1.10250 1.19358 0.77884 0.86800 0.83787 1.90631 1.51723 1.16166 1.85077 1.22445 0.97220 1.02849 0.98038 0.86400 1.22966 1.01722 0.99110 0.94584 1.21761 0.89185 1.01027 0.99940 0.87153 1.21784 0.99108 0.98318 0.95374 0.87906 1.23135 0.99220 1.03631 0.92760 1.22376 0.92714 0.97655 1.05004 0.88323 1.21321 1.01525 0.94522 1.00255 0.95561 0.96735 0.89235 0.92593 0.78129 0.87779 0.88535 0.88264 0.88511 0.92402 0.92538 0.92565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.75 9.26 37.15 0.34 -3.40 16 2 C 0.27 6.79 2.56 -69.09 -0.18 6.62 16 3 H 0.05 1.38 7.58 -51.93 -0.39 0.99 16 4 C -0.53 -13.87 8.73 -34.44 -0.30 -14.17 16 5 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -25.02 11.32 55.43 0.63 -24.39 16 8 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 9 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 10 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 12 N -0.70 -14.63 3.97 -54.93 -0.22 -14.85 16 13 C 0.54 10.92 5.89 -10.98 -0.06 10.86 16 14 O -0.56 -13.71 16.13 5.55 0.09 -13.62 16 15 C -0.18 -2.80 6.18 -91.77 -0.57 -3.37 16 16 H 0.12 1.52 8.14 -51.93 -0.42 1.10 16 17 C -0.15 -1.98 9.76 -26.74 -0.26 -2.24 16 18 C -0.10 -1.33 5.50 -90.62 -0.50 -1.82 16 19 H 0.11 1.22 6.66 -51.93 -0.35 0.87 16 20 C -0.13 -1.87 5.17 -90.62 -0.47 -2.34 16 21 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 22 C -0.15 -2.39 8.49 -26.73 -0.23 -2.62 16 23 C -0.16 -2.04 6.41 -90.62 -0.58 -2.63 16 24 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 25 C -0.12 -1.26 8.77 37.16 0.33 -0.94 16 26 H 0.03 0.61 8.14 -51.92 -0.42 0.19 16 27 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.09 2.45 6.07 -51.92 -0.32 2.14 16 29 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.39 7.10 8.03 -40.82 -0.33 6.77 16 31 H 0.10 1.60 7.82 -51.93 -0.41 1.20 16 32 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.10 1.62 6.95 -51.93 -0.36 1.26 16 34 H 0.10 1.73 8.14 -51.93 -0.42 1.31 16 35 H 0.06 0.62 7.89 -51.93 -0.41 0.21 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.53 7.71 -51.93 -0.40 0.13 16 LS Contribution 304.19 15.07 4.58 4.58 Total: -1.00 -29.89 304.19 -8.39 -38.28 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -5.88 Total: 8.73 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: -2.57 Total: -14.38 kcal Atomic # 7 Polarization: -39.65 SS G_CDS: 0.41 Total: -39.24 kcal Atomic # 8 Polarization: -13.71 SS G_CDS: 0.09 Total: -13.62 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.89 -8.39 -38.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717217514.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.729 kcal (2) G-P(sol) polarization free energy of solvation -29.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds