Wall clock time and date at job start Mon Mar 30 2020 03:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.47113 * 2 1 4 4 C 1.50703 * 109.47245 * 239.99997 * 2 1 3 5 5 H 1.08005 * 119.99505 * 239.99545 * 4 2 1 6 6 C 1.37871 * 120.00085 * 60.00291 * 4 2 1 7 7 N 1.31517 * 120.00139 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99953 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47315 * 59.99563 * 8 6 4 10 10 H 1.48504 * 109.47275 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47147 * 299.99708 * 8 6 4 12 12 N 1.46496 * 109.47092 * 119.99963 * 2 1 3 13 13 C 1.34780 * 119.99868 * 275.00121 * 12 2 1 14 14 O 1.21286 * 120.00034 * 359.97438 * 13 12 2 15 15 C 1.50702 * 120.00097 * 180.27599 * 13 12 2 16 16 H 1.09007 * 115.54779 * 304.61692 * 15 13 12 17 17 C 1.52997 * 117.50247 * 158.90749 * 15 13 12 18 18 C 1.52993 * 60.00217 * 252.50838 * 17 15 13 19 19 H 1.09001 * 117.50159 * 252.50965 * 18 17 15 20 20 C 1.52999 * 117.51906 * 107.47693 * 18 17 15 21 21 H 1.09005 * 115.55054 * 13.90722 * 20 18 17 22 22 C 1.53004 * 117.50105 * 228.23562 * 20 18 17 23 23 C 1.52997 * 60.00071 * 252.50954 * 22 20 18 24 24 H 1.09000 * 117.50242 * 252.51065 * 23 22 20 25 25 C 1.53005 * 117.49882 * 107.48830 * 23 22 20 26 26 H 1.09007 * 109.47095 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47631 * 300.00430 * 1 2 3 28 28 H 1.09009 * 109.46857 * 60.00634 * 1 2 3 29 29 H 0.97000 * 120.00057 * 180.02562 * 7 6 4 30 30 H 0.96997 * 120.00598 * 95.00288 * 12 2 1 31 31 H 1.09001 * 117.49381 * 0.02562 * 17 15 13 32 32 H 1.08998 * 117.50227 * 145.01808 * 17 15 13 33 33 H 1.09001 * 117.49958 * 359.97438 * 22 20 18 34 34 H 1.09000 * 117.50051 * 144.99810 * 22 20 18 35 35 H 1.08999 * 109.47003 * 351.37660 * 25 23 22 36 36 H 1.08996 * 109.46762 * 111.37985 * 25 23 22 37 37 H 1.09000 * 109.47093 * 231.37968 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3226 -1.1196 -4.0079 9 1 1.8282 -2.5199 -4.0081 10 1 1.8271 -0.4199 -5.2205 11 1 3.8076 -1.1189 -4.0076 12 7 2.0182 -0.6906 1.1961 13 6 2.1469 -0.0182 2.3571 14 8 1.8589 1.1587 2.4115 15 6 2.6552 -0.7270 3.5861 16 1 2.1020 -1.6204 3.8760 17 6 3.2444 0.1338 4.7053 18 6 4.1653 -0.7204 3.8318 19 1 4.6056 -1.6093 4.2837 20 6 5.0439 0.0049 2.8106 21 1 5.1231 1.0842 2.9410 22 6 5.0584 -0.5368 1.3798 23 6 6.2754 -0.7359 2.2855 24 1 7.1650 -0.1440 2.0705 25 6 6.5339 -2.1453 2.8218 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 0.7082 1.1608 -3.4845 30 1 2.2490 -1.6317 1.1527 31 1 3.2640 1.2129 4.5528 32 1 3.0788 -0.1930 5.7319 33 1 4.4423 -1.4102 1.1660 34 1 5.1471 0.1860 0.5688 35 1 5.6868 -2.7872 2.5799 36 1 7.4374 -2.5481 2.3640 37 1 6.6617 -2.1047 3.9035 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717217514.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:05 Heat of formation + Delta-G solvation = -19.214910 kcal Electronic energy + Delta-G solvation = -17368.577022 eV Core-core repulsion = 14725.259932 eV Total energy + Delta-G solvation = -2643.317090 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.08563 -39.01322 -36.90621 -35.99125 -34.25237 -30.91809 -29.29383 -27.34569 -25.82376 -24.45487 -22.48760 -22.07974 -21.05192 -20.18206 -18.50276 -17.42869 -17.12557 -16.96650 -16.24971 -15.82856 -15.27555 -14.71893 -14.41381 -14.36635 -13.76781 -13.67665 -13.31583 -13.08527 -12.94620 -12.86410 -12.75893 -12.33603 -12.26896 -12.17080 -12.04197 -11.75272 -11.43159 -11.09975 -10.75266 -10.62973 -10.55594 -10.36347 -9.66481 -8.16539 -6.33314 1.43623 1.45673 1.53276 1.80612 2.34725 2.57275 2.75704 3.04461 3.14088 3.67593 3.83327 3.86006 4.07660 4.14077 4.33902 4.41654 4.48537 4.52824 4.74746 4.90538 4.92527 4.97808 5.00617 5.06828 5.10374 5.11130 5.24625 5.25892 5.35739 5.45347 5.50717 5.64215 5.71094 5.93494 6.11600 6.74767 7.03918 7.34338 7.63555 8.89816 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.024112 B = 0.007894 C = 0.006371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.949771 B = 3546.010907 C = 4393.655166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.276 3.724 3 H -0.008 1.008 4 C -0.538 4.538 5 H 0.073 0.927 6 C 0.013 3.987 7 N -0.920 5.920 8 Si 0.969 3.031 9 H -0.263 1.263 10 H -0.287 1.287 11 H -0.271 1.271 12 N -0.695 5.695 13 C 0.532 3.468 14 O -0.609 6.609 15 C -0.195 4.195 16 H 0.153 0.847 17 C -0.141 4.141 18 C -0.080 4.080 19 H 0.149 0.851 20 C -0.140 4.140 21 H 0.081 0.919 22 C -0.177 4.177 23 C -0.128 4.128 24 H 0.105 0.895 25 C -0.119 4.119 26 H 0.041 0.959 27 H 0.009 0.991 28 H 0.065 0.935 29 H 0.264 0.736 30 H 0.402 0.598 31 H 0.076 0.924 32 H 0.136 0.864 33 H 0.096 0.904 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.069 0.931 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.101 -8.859 11.923 17.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.172 3.828 3 H 0.010 0.990 4 C -0.576 4.576 5 H 0.091 0.909 6 C -0.186 4.186 7 N -0.559 5.559 8 Si 0.794 3.206 9 H -0.188 1.188 10 H -0.213 1.213 11 H -0.196 1.196 12 N -0.343 5.343 13 C 0.320 3.680 14 O -0.491 6.491 15 C -0.216 4.216 16 H 0.171 0.829 17 C -0.178 4.178 18 C -0.098 4.098 19 H 0.167 0.833 20 C -0.159 4.159 21 H 0.099 0.901 22 C -0.214 4.214 23 C -0.146 4.146 24 H 0.123 0.877 25 C -0.175 4.175 26 H 0.060 0.940 27 H 0.028 0.972 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.237 0.763 31 H 0.094 0.906 32 H 0.154 0.846 33 H 0.114 0.886 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 8.802 -7.925 11.786 16.709 hybrid contribution -0.168 0.086 -1.345 1.358 sum 8.634 -7.840 10.441 15.653 Atomic orbital electron populations 1.21923 0.98711 0.99409 0.99372 1.18236 0.90717 0.91664 0.82140 0.98985 1.21464 1.32197 1.13324 0.90612 0.90875 1.25787 0.94963 0.95582 1.02297 1.70057 1.37197 1.24085 1.24527 0.85444 0.78656 0.78789 0.77745 1.18781 1.21313 1.19602 1.46173 1.64816 1.13907 1.09386 1.20289 0.76490 0.86300 0.84916 1.90606 1.53760 1.18743 1.86030 1.22419 0.99159 1.04094 0.95925 0.82939 1.23087 1.00974 0.97623 0.96123 1.21904 0.87419 1.01772 0.98727 0.83330 1.21848 1.01242 0.97828 0.94955 0.90086 1.22982 1.02618 1.03111 0.92716 1.22503 0.91502 0.99084 1.01523 0.87691 1.21383 1.02249 0.92304 1.01596 0.94009 0.97233 0.91587 0.92665 0.76324 0.90556 0.84573 0.88573 0.92075 0.92197 0.91237 0.90382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.07 9.26 71.98 0.67 -6.40 16 2 C 0.28 14.59 2.56 44.24 0.11 14.70 16 3 H -0.01 -0.49 7.58 -2.39 -0.02 -0.51 16 4 C -0.54 -28.59 8.73 25.60 0.22 -28.36 16 5 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 6 C 0.01 0.73 5.30 84.65 0.45 1.18 16 7 N -0.92 -53.71 11.32 21.45 0.24 -53.47 16 8 Si 0.97 42.41 29.54 68.60 2.03 44.43 16 9 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 10 H -0.29 -12.55 7.11 99.48 0.71 -11.85 16 11 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 12 N -0.70 -29.34 3.97 -446.10 -1.77 -31.11 16 13 C 0.53 21.94 5.89 87.66 0.52 22.45 16 14 O -0.61 -31.42 16.13 -3.05 -0.05 -31.47 16 15 C -0.20 -5.49 6.18 -11.54 -0.07 -5.56 16 16 H 0.15 3.28 8.14 -2.38 -0.02 3.27 16 17 C -0.14 -3.47 9.76 30.59 0.30 -3.17 16 18 C -0.08 -1.87 5.50 -10.80 -0.06 -1.93 16 19 H 0.15 2.43 6.66 -2.39 -0.02 2.41 16 20 C -0.14 -4.01 5.17 -10.79 -0.06 -4.06 16 21 H 0.08 2.64 8.14 -2.38 -0.02 2.62 16 22 C -0.18 -5.69 8.49 30.59 0.26 -5.43 16 23 C -0.13 -3.03 6.41 -10.79 -0.07 -3.10 16 24 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 25 C -0.12 -2.01 8.77 71.98 0.63 -1.38 16 26 H 0.04 1.99 8.14 -2.38 -0.02 1.97 16 27 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.07 3.76 6.07 -2.38 -0.01 3.75 16 29 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 30 H 0.40 14.44 8.03 -92.71 -0.74 13.69 16 31 H 0.08 2.34 7.82 -2.39 -0.02 2.32 16 32 H 0.14 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.10 3.10 6.95 -2.39 -0.02 3.08 16 34 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.06 1.03 7.89 -2.39 -0.02 1.01 16 36 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.08 1.05 7.71 -2.39 -0.02 1.03 16 Total: -1.00 -68.71 304.19 3.66 -65.05 By element: Atomic # 1 Polarization: 27.32 SS G_CDS: 0.31 Total: 27.63 kcal Atomic # 6 Polarization: -23.96 SS G_CDS: 2.90 Total: -21.06 kcal Atomic # 7 Polarization: -83.05 SS G_CDS: -1.53 Total: -84.58 kcal Atomic # 8 Polarization: -31.42 SS G_CDS: -0.05 Total: -31.47 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.43 kcal Total: -68.71 3.66 -65.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717217514.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.831 kcal (2) G-P(sol) polarization free energy of solvation -68.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds