Wall clock time and date at job start Mon Mar 30 2020 03:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 115.56307 * 2 1 4 4 C 1.53005 * 117.49792 * 214.31415 * 2 1 3 5 5 C 1.52999 * 59.99987 * 252.51018 * 4 2 1 6 6 H 1.09004 * 117.49853 * 252.49244 * 5 4 2 7 7 C 1.52998 * 117.50036 * 107.48940 * 5 4 2 8 8 H 1.08994 * 115.56377 * 280.85406 * 7 5 4 9 9 C 1.53070 * 117.51306 * 135.15142 * 7 5 4 10 10 C 1.52995 * 59.98553 * 252.52213 * 9 7 5 11 11 H 1.08995 * 117.50048 * 252.49963 * 10 9 7 12 12 C 1.50707 * 117.49759 * 107.49883 * 10 9 7 13 13 O 1.21280 * 119.99814 * 38.52814 * 12 10 9 14 14 N 1.34770 * 120.00244 * 218.52772 * 12 10 9 15 15 C 1.46494 * 120.00347 * 179.97438 * 14 12 10 16 16 C 1.53003 * 109.47556 * 179.97438 * 15 14 12 17 17 C 1.50700 * 109.47297 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99808 * 0.02562 * 17 16 15 19 19 C 1.37876 * 119.99772 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00267 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99657 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.46803 * 179.97438 * 21 19 17 23 23 H 1.48495 * 109.47211 * 299.99673 * 21 19 17 24 24 H 1.48506 * 109.47464 * 60.00118 * 21 19 17 25 25 H 1.08999 * 109.46960 * 274.31080 * 1 2 3 26 26 H 1.08997 * 109.47212 * 34.30688 * 1 2 3 27 27 H 1.08998 * 109.47443 * 154.31155 * 1 2 3 28 28 H 1.09006 * 117.49804 * 145.01924 * 4 2 1 29 29 H 1.09001 * 117.49873 * 359.97438 * 4 2 1 30 30 H 1.08999 * 117.49549 * 145.03491 * 9 7 5 31 31 H 1.08996 * 117.51803 * 0.02562 * 9 7 5 32 32 H 0.97002 * 119.99854 * 0.02562 * 14 12 10 33 33 H 1.08998 * 109.47185 * 59.99857 * 15 14 12 34 34 H 1.09001 * 109.47361 * 300.00238 * 15 14 12 35 35 H 1.09004 * 109.46424 * 59.99791 * 16 15 14 36 36 H 1.09001 * 109.47112 * 300.00552 * 16 15 14 37 37 H 0.97003 * 120.00111 * 0.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2364 -1.1210 -0.7651 5 6 2.2364 -1.1211 0.7649 6 1 3.1716 -0.8756 1.2682 7 6 1.3588 -2.1562 1.4713 8 1 0.2972 -1.9152 1.5243 9 6 1.9709 -2.9149 2.6515 10 6 1.7419 -3.6296 1.3183 11 1 0.9322 -4.3577 1.2702 12 6 2.9548 -3.9500 0.4832 13 8 3.9800 -4.3156 1.0183 14 7 2.9003 -3.8303 -0.8580 15 6 4.0795 -4.1413 -1.6697 16 6 3.7522 -3.9254 -3.1486 17 6 4.9654 -4.2447 -3.9835 18 1 5.8786 -4.5695 -3.5070 19 6 4.9097 -4.1221 -5.3557 20 7 3.7976 -3.7271 -5.9360 21 14 6.4134 -4.5186 -6.3906 22 1 6.0956 -4.3089 -7.8261 23 1 7.5345 -3.6283 -5.9962 24 1 6.8052 -5.9343 -6.1726 25 1 -0.3633 0.0772 1.0248 26 1 -0.3633 0.8489 -0.5792 27 1 -0.3634 -0.9261 -0.4455 28 1 3.1715 -0.8751 -1.2684 29 1 1.6111 -1.8587 -1.2681 30 1 1.3117 -3.1725 3.4805 31 1 2.9986 -2.6762 2.9250 32 1 2.0805 -3.5375 -1.2859 33 1 4.3671 -5.1804 -1.5096 34 1 4.9025 -3.4878 -1.3803 35 1 3.4643 -2.8864 -3.3090 36 1 2.9293 -4.5792 -3.4378 37 1 3.0166 -3.5215 -5.3986 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717219104.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:40 Heat of formation + Delta-G solvation = -8.934102 kcal Electronic energy + Delta-G solvation = -16936.835928 eV Core-core repulsion = 14293.964648 eV Total energy + Delta-G solvation = -2642.871280 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.04728 -37.92451 -35.62201 -34.77738 -33.03009 -29.46214 -28.57650 -25.29628 -23.97407 -23.04845 -21.57290 -21.14697 -20.01412 -18.94954 -16.92146 -16.44030 -16.19057 -15.36678 -15.10079 -14.44971 -13.88237 -13.71949 -13.46988 -13.12342 -12.87330 -12.56808 -12.32890 -12.01736 -11.67069 -11.38903 -11.25771 -10.98119 -10.90884 -10.64502 -10.43272 -10.18132 -9.96437 -9.76878 -9.71963 -9.36206 -8.67241 -8.49627 -8.34354 -6.43838 -4.13682 2.96036 3.36426 3.43141 3.44470 3.63061 3.70755 3.91846 4.47447 4.52336 4.65802 4.74035 4.92794 5.02170 5.19809 5.28443 5.32109 5.34310 5.35841 5.66432 5.68905 5.74116 5.85739 5.93743 6.02157 6.11055 6.20943 6.22197 6.24656 6.27360 6.61987 6.87040 7.26136 7.35811 7.99358 8.10439 8.38243 8.66265 8.80370 9.58067 10.97212 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.028778 B = 0.005732 C = 0.005039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.738675 B = 4883.919119 C = 5555.435035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.152 4.152 3 H 0.102 0.898 4 C -0.159 4.159 5 C -0.130 4.130 6 H 0.104 0.896 7 C -0.105 4.105 8 H 0.115 0.885 9 C -0.143 4.143 10 C -0.183 4.183 11 H 0.126 0.874 12 C 0.540 3.460 13 O -0.551 6.551 14 N -0.716 5.716 15 C 0.129 3.871 16 C 0.001 3.999 17 C -0.602 4.602 18 H 0.052 0.948 19 C 0.018 3.982 20 N -0.910 5.910 21 Si 1.070 2.930 22 H -0.282 1.282 23 H -0.287 1.287 24 H -0.287 1.287 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.098 0.902 29 H 0.095 0.905 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.395 0.605 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.014 0.986 36 H 0.012 0.988 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.355 5.792 13.219 16.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.170 4.170 3 H 0.120 0.880 4 C -0.196 4.196 5 C -0.148 4.148 6 H 0.122 0.878 7 C -0.123 4.123 8 H 0.133 0.867 9 C -0.180 4.180 10 C -0.204 4.204 11 H 0.144 0.856 12 C 0.325 3.675 13 O -0.429 6.429 14 N -0.367 5.367 15 C 0.007 3.993 16 C -0.036 4.036 17 C -0.641 4.641 18 H 0.070 0.930 19 C -0.186 4.186 20 N -0.546 5.546 21 Si 0.898 3.102 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.213 1.213 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.117 0.883 29 H 0.113 0.887 30 H 0.119 0.881 31 H 0.120 0.880 32 H 0.231 0.769 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.032 0.968 36 H 0.030 0.970 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.040 5.456 12.008 14.950 hybrid contribution -0.946 0.089 1.373 1.670 sum -7.986 5.545 13.381 16.540 Atomic orbital electron populations 1.21345 0.93029 1.02040 1.01449 1.22382 0.95277 0.94411 1.04910 0.87994 1.23201 1.02773 1.00449 0.93144 1.21824 0.99932 0.98795 0.94266 0.87807 1.21865 0.99513 0.89856 1.01108 0.86748 1.22994 1.02781 1.01531 0.90698 1.22354 0.99865 0.96983 1.01212 0.85587 1.19510 0.88131 0.77198 0.82618 1.90663 1.32301 1.47476 1.72492 1.46457 1.16626 1.67484 1.06084 1.21532 0.86070 0.99830 0.91869 1.19437 0.98121 0.96575 0.89507 1.21888 0.98162 1.50255 0.93758 0.92960 1.25863 1.02610 0.94120 0.96023 1.70804 1.02447 1.42037 1.39313 0.83521 0.74211 0.76453 0.76009 1.20725 1.21340 1.21339 0.92343 0.92233 0.92376 0.88348 0.88672 0.88080 0.87995 0.76913 0.92618 0.92530 0.96764 0.97006 0.92179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.11 8.75 37.15 0.33 -0.78 16 2 C -0.15 -1.66 6.41 -90.62 -0.58 -2.24 16 3 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 4 C -0.16 -2.11 7.94 -26.73 -0.21 -2.32 16 5 C -0.13 -1.58 5.09 -90.62 -0.46 -2.04 16 6 H 0.10 1.36 8.14 -51.93 -0.42 0.93 16 7 C -0.11 -1.14 5.52 -90.58 -0.50 -1.64 16 8 H 0.11 1.04 6.60 -51.93 -0.34 0.69 16 9 C -0.14 -1.61 9.81 -26.70 -0.26 -1.87 16 10 C -0.18 -2.34 6.15 -91.77 -0.56 -2.91 16 11 H 0.13 1.36 8.14 -51.93 -0.42 0.94 16 12 C 0.54 9.42 6.36 -10.99 -0.07 9.35 16 13 O -0.55 -11.84 16.89 5.56 0.09 -11.75 16 14 N -0.72 -12.59 4.05 -60.30 -0.24 -12.83 16 15 C 0.13 2.80 5.61 -4.04 -0.02 2.78 16 16 C 0.00 0.02 4.40 -27.88 -0.12 -0.10 16 17 C -0.60 -16.95 9.11 -34.44 -0.31 -17.27 16 18 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 19 C 0.02 0.51 5.46 -17.82 -0.10 0.41 16 20 N -0.91 -27.27 13.65 55.43 0.76 -26.51 16 21 Si 1.07 25.11 29.90 -169.99 -5.08 20.03 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 23 H -0.29 -6.45 7.11 56.52 0.40 -6.04 16 24 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 25 H 0.06 0.47 7.75 -51.93 -0.40 0.07 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.53 7.85 -51.93 -0.41 0.12 16 28 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 29 H 0.10 1.26 6.01 -51.93 -0.31 0.95 16 30 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.10 1.30 8.12 -51.93 -0.42 0.88 16 32 H 0.40 6.15 6.24 -40.82 -0.25 5.89 16 33 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.01 0.35 8.01 -51.93 -0.42 -0.06 16 36 H 0.01 0.30 8.01 -51.93 -0.42 -0.12 16 37 H 0.27 7.91 7.22 -40.82 -0.29 7.61 16 LS Contribution 305.12 15.07 4.60 4.60 Total: -1.00 -31.84 305.12 -8.61 -40.46 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -5.85 Total: 4.64 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: -2.88 Total: -18.63 kcal Atomic # 7 Polarization: -39.86 SS G_CDS: 0.51 Total: -39.34 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: 0.09 Total: -11.75 kcal Atomic # 14 Polarization: 25.11 SS G_CDS: -5.08 Total: 20.03 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.84 -8.61 -40.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717219104.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.522 kcal (2) G-P(sol) polarization free energy of solvation -31.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds