Wall clock time and date at job start Mon Mar 30 2020 03:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 115.56307 * 2 1 4 4 C 1.53005 * 117.49792 * 214.31415 * 2 1 3 5 5 C 1.52999 * 59.99987 * 252.51018 * 4 2 1 6 6 H 1.09004 * 117.49853 * 252.49244 * 5 4 2 7 7 C 1.52998 * 117.50036 * 107.48940 * 5 4 2 8 8 H 1.08994 * 115.56377 * 280.85406 * 7 5 4 9 9 C 1.53070 * 117.51306 * 135.15142 * 7 5 4 10 10 C 1.52995 * 59.98553 * 252.52213 * 9 7 5 11 11 H 1.08995 * 117.50048 * 252.49963 * 10 9 7 12 12 C 1.50707 * 117.49759 * 107.49883 * 10 9 7 13 13 O 1.21280 * 119.99814 * 38.52814 * 12 10 9 14 14 N 1.34770 * 120.00244 * 218.52772 * 12 10 9 15 15 C 1.46494 * 120.00347 * 179.97438 * 14 12 10 16 16 C 1.53003 * 109.47556 * 179.97438 * 15 14 12 17 17 C 1.50700 * 109.47297 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99808 * 0.02562 * 17 16 15 19 19 C 1.37876 * 119.99772 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00267 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99657 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.46803 * 179.97438 * 21 19 17 23 23 H 1.48495 * 109.47211 * 299.99673 * 21 19 17 24 24 H 1.48506 * 109.47464 * 60.00118 * 21 19 17 25 25 H 1.08999 * 109.46960 * 274.31080 * 1 2 3 26 26 H 1.08997 * 109.47212 * 34.30688 * 1 2 3 27 27 H 1.08998 * 109.47443 * 154.31155 * 1 2 3 28 28 H 1.09006 * 117.49804 * 145.01924 * 4 2 1 29 29 H 1.09001 * 117.49873 * 359.97438 * 4 2 1 30 30 H 1.08999 * 117.49549 * 145.03491 * 9 7 5 31 31 H 1.08996 * 117.51803 * 0.02562 * 9 7 5 32 32 H 0.97002 * 119.99854 * 0.02562 * 14 12 10 33 33 H 1.08998 * 109.47185 * 59.99857 * 15 14 12 34 34 H 1.09001 * 109.47361 * 300.00238 * 15 14 12 35 35 H 1.09004 * 109.46424 * 59.99791 * 16 15 14 36 36 H 1.09001 * 109.47112 * 300.00552 * 16 15 14 37 37 H 0.97003 * 120.00111 * 0.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2364 -1.1210 -0.7651 5 6 2.2364 -1.1211 0.7649 6 1 3.1716 -0.8756 1.2682 7 6 1.3588 -2.1562 1.4713 8 1 0.2972 -1.9152 1.5243 9 6 1.9709 -2.9149 2.6515 10 6 1.7419 -3.6296 1.3183 11 1 0.9322 -4.3577 1.2702 12 6 2.9548 -3.9500 0.4832 13 8 3.9800 -4.3156 1.0183 14 7 2.9003 -3.8303 -0.8580 15 6 4.0795 -4.1413 -1.6697 16 6 3.7522 -3.9254 -3.1486 17 6 4.9654 -4.2447 -3.9835 18 1 5.8786 -4.5695 -3.5070 19 6 4.9097 -4.1221 -5.3557 20 7 3.7976 -3.7271 -5.9360 21 14 6.4134 -4.5186 -6.3906 22 1 6.0956 -4.3089 -7.8261 23 1 7.5345 -3.6283 -5.9962 24 1 6.8052 -5.9343 -6.1726 25 1 -0.3633 0.0772 1.0248 26 1 -0.3633 0.8489 -0.5792 27 1 -0.3634 -0.9261 -0.4455 28 1 3.1715 -0.8751 -1.2684 29 1 1.6111 -1.8587 -1.2681 30 1 1.3117 -3.1725 3.4805 31 1 2.9986 -2.6762 2.9250 32 1 2.0805 -3.5375 -1.2859 33 1 4.3671 -5.1804 -1.5096 34 1 4.9025 -3.4878 -1.3803 35 1 3.4643 -2.8864 -3.3090 36 1 2.9293 -4.5792 -3.4378 37 1 3.0166 -3.5215 -5.3986 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717219104.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:40 Heat of formation + Delta-G solvation = -27.661666 kcal Electronic energy + Delta-G solvation = -16937.648017 eV Core-core repulsion = 14293.964648 eV Total energy + Delta-G solvation = -2643.683369 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.30165 -39.11380 -37.04592 -36.18873 -35.01358 -31.37563 -29.35900 -26.98855 -25.35131 -24.36912 -23.12594 -22.44330 -21.13886 -20.17713 -18.86681 -17.76658 -17.24637 -16.99984 -16.32286 -15.94214 -15.64995 -15.25597 -14.74627 -14.41719 -14.18733 -13.82860 -13.70861 -13.39103 -13.12037 -12.88265 -12.40587 -12.30953 -12.14308 -12.10270 -11.91326 -11.85684 -11.51246 -11.15250 -10.76719 -10.67595 -10.59206 -10.45604 -10.04391 -8.73265 -6.44284 1.52871 1.58512 1.60311 1.80348 2.16174 2.50821 2.57547 2.97151 3.12117 3.50005 3.69374 3.77990 3.91894 4.05412 4.17518 4.29721 4.32331 4.37652 4.43130 4.46643 4.64900 4.85610 4.86054 4.91680 4.98213 5.02100 5.10150 5.15586 5.20002 5.27669 5.31535 5.41006 5.44924 5.92441 6.12013 6.48356 6.60875 7.23237 7.35620 8.68994 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.028778 B = 0.005732 C = 0.005039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.738675 B = 4883.919119 C = 5555.435035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.130 4.130 3 H 0.106 0.894 4 C -0.182 4.182 5 C -0.136 4.136 6 H 0.088 0.912 7 C -0.087 4.087 8 H 0.147 0.853 9 C -0.136 4.136 10 C -0.194 4.194 11 H 0.156 0.844 12 C 0.537 3.463 13 O -0.596 6.596 14 N -0.707 5.707 15 C 0.149 3.851 16 C 0.011 3.989 17 C -0.625 4.625 18 H 0.047 0.953 19 C -0.030 4.030 20 N -0.931 5.931 21 Si 1.116 2.884 22 H -0.280 1.280 23 H -0.271 1.271 24 H -0.271 1.271 25 H 0.078 0.922 26 H 0.066 0.934 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.094 0.906 30 H 0.136 0.864 31 H 0.080 0.920 32 H 0.407 0.593 33 H 0.041 0.959 34 H 0.040 0.960 35 H 0.007 0.993 36 H 0.004 0.996 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.794 6.150 14.238 18.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.148 4.148 3 H 0.124 0.876 4 C -0.220 4.220 5 C -0.154 4.154 6 H 0.106 0.894 7 C -0.105 4.105 8 H 0.165 0.835 9 C -0.173 4.173 10 C -0.215 4.215 11 H 0.173 0.827 12 C 0.326 3.674 13 O -0.478 6.478 14 N -0.359 5.359 15 C 0.025 3.975 16 C -0.026 4.026 17 C -0.663 4.663 18 H 0.065 0.935 19 C -0.228 4.228 20 N -0.568 5.568 21 Si 0.937 3.063 22 H -0.205 1.205 23 H -0.196 1.196 24 H -0.196 1.196 25 H 0.096 0.904 26 H 0.085 0.915 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.112 0.888 30 H 0.154 0.846 31 H 0.099 0.901 32 H 0.245 0.755 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.026 0.974 36 H 0.022 0.978 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.517 5.828 13.049 16.636 hybrid contribution -0.483 0.015 1.088 1.191 sum -8.999 5.843 14.137 17.748 Atomic orbital electron populations 1.21399 0.90959 1.02560 1.02911 1.22493 0.96714 0.93687 1.01895 0.87615 1.23094 1.02261 1.02661 0.93956 1.21866 1.00138 1.00191 0.93230 0.89403 1.21983 1.00722 0.87798 0.99996 0.83545 1.23128 1.02526 1.00502 0.91186 1.22364 0.98392 0.99127 1.01589 0.82671 1.20373 0.89154 0.75637 0.82284 1.90638 1.34589 1.49403 1.73136 1.46273 1.15781 1.67473 1.06347 1.21009 0.87249 0.98515 0.90755 1.19257 0.96717 0.95700 0.90963 1.22307 0.99096 1.50209 0.94664 0.93454 1.27330 1.04558 0.93230 0.97693 1.70921 1.02900 1.43604 1.39355 0.82940 0.71405 0.77434 0.74507 1.20503 1.19646 1.19601 0.90359 0.91461 0.92179 0.91293 0.88757 0.84618 0.90110 0.75501 0.94033 0.94110 0.97432 0.97800 0.93173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.81 8.75 71.98 0.63 -1.18 16 2 C -0.13 -2.62 6.41 -10.79 -0.07 -2.69 16 3 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 4 C -0.18 -4.88 7.94 30.60 0.24 -4.63 16 5 C -0.14 -3.16 5.09 -10.79 -0.05 -3.22 16 6 H 0.09 2.32 8.14 -2.38 -0.02 2.30 16 7 C -0.09 -1.64 5.52 -10.77 -0.06 -1.70 16 8 H 0.15 1.91 6.60 -2.39 -0.02 1.90 16 9 C -0.14 -2.70 9.81 30.62 0.30 -2.40 16 10 C -0.19 -4.52 6.15 -11.54 -0.07 -4.59 16 11 H 0.16 2.77 8.14 -2.39 -0.02 2.75 16 12 C 0.54 18.69 6.36 87.66 0.56 19.25 16 13 O -0.60 -26.14 16.89 -3.03 -0.05 -26.19 16 14 N -0.71 -25.23 4.05 -463.07 -1.88 -27.11 16 15 C 0.15 6.66 5.61 86.38 0.48 7.15 16 16 C 0.01 0.56 4.40 29.85 0.13 0.69 16 17 C -0.62 -35.82 9.11 25.60 0.23 -35.59 16 18 H 0.05 2.70 7.74 -2.91 -0.02 2.68 16 19 C -0.03 -1.70 5.46 84.65 0.46 -1.24 16 20 N -0.93 -56.37 13.65 21.45 0.29 -56.07 16 21 Si 1.12 50.21 29.90 68.60 2.05 52.26 16 22 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 23 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 24 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 25 H 0.08 0.90 7.75 -2.39 -0.02 0.88 16 26 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.06 0.90 7.85 -2.39 -0.02 0.88 16 28 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 29 H 0.09 2.49 6.01 -2.39 -0.01 2.47 16 30 H 0.14 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.08 1.98 8.12 -2.39 -0.02 1.96 16 32 H 0.41 12.66 6.24 -92.71 -0.58 12.08 16 33 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.01 0.39 8.01 -2.38 -0.02 0.37 16 36 H 0.00 0.20 8.01 -2.39 -0.02 0.18 16 37 H 0.26 15.61 7.22 -92.71 -0.67 14.94 16 Total: -1.00 -70.03 305.12 3.77 -66.26 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: 0.57 Total: 21.01 kcal Atomic # 6 Polarization: -32.94 SS G_CDS: 2.79 Total: -30.15 kcal Atomic # 7 Polarization: -81.60 SS G_CDS: -1.58 Total: -83.18 kcal Atomic # 8 Polarization: -26.14 SS G_CDS: -0.05 Total: -26.19 kcal Atomic # 14 Polarization: 50.21 SS G_CDS: 2.05 Total: 52.26 kcal Total: -70.03 3.77 -66.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717219104.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.593 kcal (2) G-P(sol) polarization free energy of solvation -70.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds