Wall clock time and date at job start Mon Mar 30 2020 03:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08993 * 115.56494 * 2 1 4 4 C 1.53004 * 117.50025 * 214.31136 * 2 1 3 5 5 C 1.53001 * 60.00267 * 252.51202 * 4 2 1 6 6 H 1.09005 * 117.49346 * 252.48997 * 5 4 2 7 7 C 1.52989 * 117.50186 * 107.48785 * 5 4 2 8 8 H 1.08999 * 115.56761 * 325.70233 * 7 5 4 9 9 C 1.53077 * 117.49476 * 179.97438 * 7 5 4 10 10 C 1.53002 * 59.98498 * 252.51234 * 9 7 5 11 11 H 1.09001 * 117.49461 * 107.50104 * 10 9 7 12 12 C 1.50700 * 117.49942 * 252.49668 * 10 9 7 13 13 O 1.21283 * 119.99803 * 68.74644 * 12 10 9 14 14 N 1.34777 * 119.99675 * 249.02519 * 12 10 9 15 15 C 1.46497 * 119.99525 * 179.72583 * 14 12 10 16 16 C 1.52999 * 109.46992 * 179.97438 * 15 14 12 17 17 C 1.50702 * 109.47525 * 180.02562 * 16 15 14 18 18 H 1.08002 * 119.99441 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00641 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99481 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00577 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.46662 * 359.97438 * 21 19 17 23 23 H 1.48491 * 109.47530 * 119.99486 * 21 19 17 24 24 H 1.48501 * 109.46908 * 239.99863 * 21 19 17 25 25 H 1.09000 * 109.47138 * 274.31159 * 1 2 3 26 26 H 1.08997 * 109.47460 * 34.30943 * 1 2 3 27 27 H 1.08999 * 109.47371 * 154.31378 * 1 2 3 28 28 H 1.08999 * 117.50165 * 145.01975 * 4 2 1 29 29 H 1.09003 * 117.49290 * 359.97438 * 4 2 1 30 30 H 1.09008 * 117.51268 * 145.03501 * 9 7 5 31 31 H 1.08998 * 117.51574 * 359.97438 * 9 7 5 32 32 H 0.97000 * 119.99894 * 359.71837 * 14 12 10 33 33 H 1.08995 * 109.47421 * 299.99467 * 15 14 12 34 34 H 1.09001 * 109.47621 * 60.00103 * 15 14 12 35 35 H 1.09009 * 109.47378 * 299.99899 * 16 15 14 36 36 H 1.08993 * 109.47209 * 59.99808 * 16 15 14 37 37 H 0.97000 * 120.00289 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0003 0.9832 0.0000 4 6 2.2364 -1.1210 -0.7650 5 6 2.2364 -1.1211 0.7650 6 1 3.1717 -0.8756 1.2682 7 6 1.3588 -2.1562 1.4714 8 1 0.4238 -2.4022 0.9681 9 6 1.3594 -2.1565 3.0022 10 6 2.0653 -3.2773 2.2363 11 1 3.1553 -3.2776 2.2359 12 6 1.4149 -4.6368 2.2363 13 8 0.3713 -4.8097 1.6430 14 7 1.9901 -5.6589 2.9003 15 6 1.3548 -6.9789 2.9052 16 6 2.2059 -7.9515 3.7242 17 6 1.5528 -9.3096 3.7288 18 1 0.6233 -9.4635 3.2008 19 6 2.1412 -10.3553 4.4079 20 7 3.2727 -10.1677 5.0513 21 14 1.3319 -12.0389 4.4131 22 1 0.0769 -11.9872 3.6208 23 1 2.2561 -13.0342 3.8129 24 1 1.0190 -12.4334 5.8101 25 1 -0.3633 0.0773 1.0247 26 1 -0.3634 0.8488 -0.5792 27 1 -0.3634 -0.9261 -0.4454 28 1 3.1715 -0.8752 -1.2683 29 1 1.6111 -1.8587 -1.2679 30 1 0.4246 -2.4025 3.5060 31 1 1.9852 -1.4197 3.5057 32 1 2.8248 -5.5205 3.3747 33 1 0.3619 -6.9027 3.3484 34 1 1.2689 -7.3448 1.8820 35 1 3.1988 -8.0278 3.2806 36 1 2.2922 -7.5859 4.7473 37 1 3.6870 -10.9034 5.5288 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717219105.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:43 Heat of formation + Delta-G solvation = -13.206286 kcal Electronic energy + Delta-G solvation = -16041.572101 eV Core-core repulsion = 13398.515565 eV Total energy + Delta-G solvation = -2643.056536 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.81877 -38.24665 -35.50786 -34.66712 -32.81522 -29.71767 -28.68076 -25.61524 -23.92142 -23.16102 -21.51555 -20.88931 -19.78246 -19.34811 -17.04516 -16.41393 -15.98135 -14.98221 -14.97783 -14.57795 -14.36784 -13.63844 -13.28871 -13.25235 -12.76510 -12.64629 -12.31854 -12.27643 -11.66460 -11.32943 -11.18935 -11.07784 -11.05748 -10.70483 -10.61773 -10.32642 -9.93987 -9.77687 -9.62008 -9.39702 -9.13086 -8.53395 -8.34192 -6.09514 -4.12267 2.80793 3.28325 3.35132 3.36923 3.41388 3.69883 4.08338 4.38665 4.45425 4.56183 4.74042 4.86973 5.05583 5.13854 5.17996 5.19502 5.27591 5.32585 5.62543 5.63938 5.66158 5.67294 5.86055 5.90862 6.00488 6.13263 6.25913 6.35509 6.36561 6.74451 6.94964 7.52375 7.62009 7.88990 8.05612 8.28245 8.69413 8.94078 9.52617 11.02172 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.062709 B = 0.003565 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.397962 B = 7852.071483 C = 7969.734962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.149 4.149 3 H 0.102 0.898 4 C -0.173 4.173 5 C -0.122 4.122 6 H 0.104 0.896 7 C -0.090 4.090 8 H 0.118 0.882 9 C -0.146 4.146 10 C -0.184 4.184 11 H 0.121 0.879 12 C 0.534 3.466 13 O -0.553 6.553 14 N -0.718 5.718 15 C 0.121 3.879 16 C 0.012 3.988 17 C -0.521 4.521 18 H 0.060 0.940 19 C 0.058 3.942 20 N -0.894 5.894 21 Si 0.897 3.103 22 H -0.271 1.271 23 H -0.283 1.283 24 H -0.283 1.283 25 H 0.061 0.939 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.093 0.907 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.102 0.898 32 H 0.398 0.602 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.022 0.978 36 H 0.023 0.977 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.411 19.552 -6.499 20.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.167 4.167 3 H 0.120 0.880 4 C -0.210 4.210 5 C -0.140 4.140 6 H 0.122 0.878 7 C -0.108 4.108 8 H 0.136 0.864 9 C -0.184 4.184 10 C -0.205 4.205 11 H 0.139 0.861 12 C 0.319 3.681 13 O -0.432 6.432 14 N -0.367 5.367 15 C -0.001 4.001 16 C -0.025 4.025 17 C -0.560 4.560 18 H 0.078 0.922 19 C -0.143 4.143 20 N -0.533 5.533 21 Si 0.724 3.276 22 H -0.196 1.196 23 H -0.209 1.209 24 H -0.209 1.209 25 H 0.080 0.920 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.112 0.888 29 H 0.115 0.885 30 H 0.118 0.882 31 H 0.120 0.880 32 H 0.232 0.768 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.041 0.959 36 H 0.041 0.959 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.040 19.289 -6.811 20.483 hybrid contribution 0.291 -1.012 0.366 1.115 sum -0.749 18.277 -6.445 19.395 Atomic orbital electron populations 1.21358 0.92756 1.01892 1.02041 1.22344 0.95631 0.94077 1.04620 0.87956 1.23128 1.02573 1.01447 0.93881 1.21824 0.99842 0.98594 0.93729 0.87775 1.21745 1.00078 0.95556 0.93431 0.86373 1.22986 1.02300 0.98788 0.94304 1.22320 1.00007 0.89486 1.08680 0.86100 1.19605 0.84642 0.85007 0.78797 1.90654 1.23647 1.84224 1.44713 1.46260 1.27019 1.11153 1.52254 1.21724 0.97191 0.80201 1.00972 1.19330 0.95192 0.93067 0.94944 1.21098 1.08319 0.94148 1.32395 0.92204 1.25002 0.94936 0.99238 0.95166 1.69966 1.17722 1.32208 1.33425 0.86454 0.79529 0.83763 0.77815 1.19572 1.20923 1.20929 0.91955 0.92469 0.92270 0.88848 0.88485 0.88207 0.87955 0.76811 0.92622 0.92602 0.95928 0.95917 0.92900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.05 9.04 37.15 0.34 -0.71 16 2 C -0.15 -1.27 6.41 -90.62 -0.58 -1.85 16 3 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 4 C -0.17 -1.60 9.90 -26.73 -0.26 -1.87 16 5 C -0.12 -1.17 5.85 -90.62 -0.53 -1.70 16 6 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 7 C -0.09 -1.05 4.69 -90.58 -0.43 -1.47 16 8 H 0.12 1.61 6.72 -51.93 -0.35 1.26 16 9 C -0.15 -1.60 9.96 -26.69 -0.27 -1.87 16 10 C -0.18 -2.36 5.91 -91.77 -0.54 -2.91 16 11 H 0.12 1.32 8.14 -51.93 -0.42 0.90 16 12 C 0.53 9.36 7.61 -10.98 -0.08 9.28 16 13 O -0.55 -11.73 16.26 5.55 0.09 -11.64 16 14 N -0.72 -12.92 5.56 -60.30 -0.33 -13.26 16 15 C 0.12 2.64 5.61 -4.04 -0.02 2.62 16 16 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 17 C -0.52 -14.60 9.11 -34.44 -0.31 -14.91 16 18 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 19 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 20 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 21 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 22 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.55 7.40 -51.93 -0.38 0.17 16 28 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.10 0.98 8.05 -51.93 -0.42 0.56 16 30 H 0.10 1.17 8.14 -51.92 -0.42 0.75 16 31 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.40 6.21 8.47 -40.82 -0.35 5.87 16 33 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 34 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 35 H 0.02 0.59 8.14 -51.92 -0.42 0.16 16 36 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 314.99 15.07 4.75 4.75 Total: -1.00 -31.34 314.99 -8.83 -40.17 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -6.11 Total: 2.72 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: -2.93 Total: -13.68 kcal Atomic # 7 Polarization: -39.19 SS G_CDS: 0.40 Total: -38.79 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.09 Total: -11.64 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.34 -8.83 -40.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717219105.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.959 kcal (2) G-P(sol) polarization free energy of solvation -31.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds