Wall clock time and date at job start Mon Mar 30 2020 03:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08993 * 115.56494 * 2 1 4 4 C 1.53004 * 117.50025 * 214.31136 * 2 1 3 5 5 C 1.53001 * 60.00267 * 252.51202 * 4 2 1 6 6 H 1.09005 * 117.49346 * 252.48997 * 5 4 2 7 7 C 1.52989 * 117.50186 * 107.48785 * 5 4 2 8 8 H 1.08999 * 115.56761 * 325.70233 * 7 5 4 9 9 C 1.53077 * 117.49476 * 179.97438 * 7 5 4 10 10 C 1.53002 * 59.98498 * 252.51234 * 9 7 5 11 11 H 1.09001 * 117.49461 * 107.50104 * 10 9 7 12 12 C 1.50700 * 117.49942 * 252.49668 * 10 9 7 13 13 O 1.21283 * 119.99803 * 68.74644 * 12 10 9 14 14 N 1.34777 * 119.99675 * 249.02519 * 12 10 9 15 15 C 1.46497 * 119.99525 * 179.72583 * 14 12 10 16 16 C 1.52999 * 109.46992 * 179.97438 * 15 14 12 17 17 C 1.50702 * 109.47525 * 180.02562 * 16 15 14 18 18 H 1.08002 * 119.99441 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00641 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99481 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00577 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.46662 * 359.97438 * 21 19 17 23 23 H 1.48491 * 109.47530 * 119.99486 * 21 19 17 24 24 H 1.48501 * 109.46908 * 239.99863 * 21 19 17 25 25 H 1.09000 * 109.47138 * 274.31159 * 1 2 3 26 26 H 1.08997 * 109.47460 * 34.30943 * 1 2 3 27 27 H 1.08999 * 109.47371 * 154.31378 * 1 2 3 28 28 H 1.08999 * 117.50165 * 145.01975 * 4 2 1 29 29 H 1.09003 * 117.49290 * 359.97438 * 4 2 1 30 30 H 1.09008 * 117.51268 * 145.03501 * 9 7 5 31 31 H 1.08998 * 117.51574 * 359.97438 * 9 7 5 32 32 H 0.97000 * 119.99894 * 359.71837 * 14 12 10 33 33 H 1.08995 * 109.47421 * 299.99467 * 15 14 12 34 34 H 1.09001 * 109.47621 * 60.00103 * 15 14 12 35 35 H 1.09009 * 109.47378 * 299.99899 * 16 15 14 36 36 H 1.08993 * 109.47209 * 59.99808 * 16 15 14 37 37 H 0.97000 * 120.00289 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0003 0.9832 0.0000 4 6 2.2364 -1.1210 -0.7650 5 6 2.2364 -1.1211 0.7650 6 1 3.1717 -0.8756 1.2682 7 6 1.3588 -2.1562 1.4714 8 1 0.4238 -2.4022 0.9681 9 6 1.3594 -2.1565 3.0022 10 6 2.0653 -3.2773 2.2363 11 1 3.1553 -3.2776 2.2359 12 6 1.4149 -4.6368 2.2363 13 8 0.3713 -4.8097 1.6430 14 7 1.9901 -5.6589 2.9003 15 6 1.3548 -6.9789 2.9052 16 6 2.2059 -7.9515 3.7242 17 6 1.5528 -9.3096 3.7288 18 1 0.6233 -9.4635 3.2008 19 6 2.1412 -10.3553 4.4079 20 7 3.2727 -10.1677 5.0513 21 14 1.3319 -12.0389 4.4131 22 1 0.0769 -11.9872 3.6208 23 1 2.2561 -13.0342 3.8129 24 1 1.0190 -12.4334 5.8101 25 1 -0.3633 0.0773 1.0247 26 1 -0.3634 0.8488 -0.5792 27 1 -0.3634 -0.9261 -0.4454 28 1 3.1715 -0.8752 -1.2683 29 1 1.6111 -1.8587 -1.2679 30 1 0.4246 -2.4025 3.5060 31 1 1.9852 -1.4197 3.5057 32 1 2.8248 -5.5205 3.3747 33 1 0.3619 -6.9027 3.3484 34 1 1.2689 -7.3448 1.8820 35 1 3.1988 -8.0278 3.2806 36 1 2.2922 -7.5859 4.7473 37 1 3.6870 -10.9034 5.5288 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717219105.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:42 Heat of formation + Delta-G solvation = -31.821852 kcal Electronic energy + Delta-G solvation = -16042.379333 eV Core-core repulsion = 13398.515565 eV Total energy + Delta-G solvation = -2643.863768 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.07680 -39.24288 -36.79083 -36.11426 -34.82410 -31.63420 -29.37026 -27.35584 -25.24708 -24.23838 -22.79393 -22.21262 -21.13867 -20.15298 -18.63316 -18.15796 -17.03691 -16.52755 -16.46715 -16.24807 -15.60317 -14.99960 -14.68677 -14.31842 -14.03725 -13.86974 -13.49869 -13.24196 -13.20087 -12.97239 -12.55272 -12.36277 -12.28542 -12.13650 -11.86851 -11.71592 -11.59264 -11.45221 -10.89448 -10.68494 -10.62696 -10.27935 -10.04003 -8.25977 -6.36685 1.39988 1.40817 1.49737 1.54143 2.18153 2.42065 2.62906 3.08644 3.20528 3.54257 3.72706 3.84201 3.98310 4.21142 4.24829 4.34538 4.37051 4.45416 4.48527 4.51980 4.80954 4.82744 4.91409 4.97411 4.98568 5.02128 5.21287 5.21700 5.27033 5.39688 5.47580 5.49051 5.55294 5.76658 6.14122 6.62274 6.76514 7.26764 7.32798 8.86130 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.062709 B = 0.003565 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.397962 B = 7852.071483 C = 7969.734962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.140 4.140 3 H 0.123 0.877 4 C -0.182 4.182 5 C -0.125 4.125 6 H 0.124 0.876 7 C -0.088 4.088 8 H 0.092 0.908 9 C -0.129 4.129 10 C -0.191 4.191 11 H 0.148 0.852 12 C 0.530 3.470 13 O -0.595 6.595 14 N -0.713 5.713 15 C 0.140 3.860 16 C 0.023 3.977 17 C -0.548 4.548 18 H 0.057 0.943 19 C 0.007 3.993 20 N -0.926 5.926 21 Si 0.966 3.034 22 H -0.266 1.266 23 H -0.276 1.276 24 H -0.275 1.275 25 H 0.061 0.939 26 H 0.070 0.930 27 H 0.042 0.958 28 H 0.108 0.892 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.136 0.864 32 H 0.412 0.588 33 H 0.044 0.956 34 H 0.044 0.956 35 H 0.009 0.991 36 H 0.010 0.990 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.190 20.768 -6.374 21.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.158 4.158 3 H 0.141 0.859 4 C -0.219 4.219 5 C -0.143 4.143 6 H 0.142 0.858 7 C -0.107 4.107 8 H 0.110 0.890 9 C -0.166 4.166 10 C -0.212 4.212 11 H 0.166 0.834 12 C 0.319 3.681 13 O -0.477 6.477 14 N -0.363 5.363 15 C 0.016 3.984 16 C -0.014 4.014 17 C -0.586 4.586 18 H 0.076 0.924 19 C -0.192 4.192 20 N -0.565 5.565 21 Si 0.791 3.209 22 H -0.190 1.190 23 H -0.201 1.201 24 H -0.201 1.201 25 H 0.080 0.920 26 H 0.089 0.911 27 H 0.061 0.939 28 H 0.127 0.873 29 H 0.098 0.902 30 H 0.107 0.893 31 H 0.154 0.846 32 H 0.248 0.752 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.027 0.973 36 H 0.028 0.972 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.421 20.528 -6.680 21.592 hybrid contribution 0.078 -1.363 0.310 1.399 sum -0.343 19.166 -6.371 20.200 Atomic orbital electron populations 1.21380 0.93159 1.01662 1.02093 1.22448 0.95395 0.94601 1.03313 0.85930 1.23170 1.03191 1.01653 0.93858 1.21862 1.00331 0.98399 0.93660 0.85784 1.21715 0.99301 0.95454 0.94204 0.88974 1.23117 1.01895 0.97729 0.93841 1.22302 1.01149 0.86824 1.10936 0.83403 1.20425 0.84028 0.86361 0.77309 1.90633 1.25678 1.85104 1.46308 1.46098 1.27492 1.09996 1.52756 1.21224 0.96236 0.81573 0.99368 1.19131 0.94769 0.93034 0.94471 1.21495 1.08629 0.95755 1.32763 0.92436 1.25879 0.95466 1.03259 0.94572 1.70061 1.18907 1.33635 1.33945 0.85379 0.78667 0.78759 0.78141 1.19046 1.20117 1.20098 0.92033 0.91069 0.93916 0.87343 0.90230 0.89340 0.84629 0.75239 0.93721 0.93795 0.97264 0.97210 0.92474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.00 9.04 71.98 0.65 -1.34 16 2 C -0.14 -2.07 6.41 -10.79 -0.07 -2.14 16 3 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 4 C -0.18 -3.08 9.90 30.60 0.30 -2.78 16 5 C -0.12 -2.09 5.85 -10.79 -0.06 -2.15 16 6 H 0.12 1.63 8.14 -2.38 -0.02 1.61 16 7 C -0.09 -1.95 4.69 -10.77 -0.05 -2.00 16 8 H 0.09 2.56 6.72 -2.39 -0.02 2.54 16 9 C -0.13 -2.53 9.96 30.62 0.30 -2.22 16 10 C -0.19 -4.62 5.91 -11.54 -0.07 -4.69 16 11 H 0.15 2.78 8.14 -2.39 -0.02 2.77 16 12 C 0.53 18.61 7.61 87.66 0.67 19.27 16 13 O -0.60 -25.89 16.26 -3.04 -0.05 -25.94 16 14 N -0.71 -25.74 5.56 -463.07 -2.57 -28.32 16 15 C 0.14 6.23 5.61 86.38 0.48 6.72 16 16 C 0.02 1.20 5.09 29.85 0.15 1.35 16 17 C -0.55 -31.10 9.11 25.60 0.23 -30.86 16 18 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 19 C 0.01 0.40 5.46 84.65 0.46 0.86 16 20 N -0.93 -54.55 13.29 21.45 0.28 -54.27 16 21 Si 0.97 43.95 29.54 68.60 2.03 45.98 16 22 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 23 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 24 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 25 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.04 0.80 7.40 -2.39 -0.02 0.79 16 28 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.08 1.62 8.05 -2.39 -0.02 1.60 16 30 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 31 H 0.14 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.41 12.62 8.47 -92.71 -0.79 11.83 16 33 H 0.04 2.07 8.14 -2.39 -0.02 2.06 16 34 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 36 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -67.77 314.99 2.95 -64.82 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: 0.26 Total: 17.71 kcal Atomic # 6 Polarization: -22.99 SS G_CDS: 3.01 Total: -19.99 kcal Atomic # 7 Polarization: -80.30 SS G_CDS: -2.29 Total: -82.59 kcal Atomic # 8 Polarization: -25.89 SS G_CDS: -0.05 Total: -25.94 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -67.77 2.95 -64.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717219105.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.998 kcal (2) G-P(sol) polarization free energy of solvation -67.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds