Wall clock time and date at job start Mon Mar 30 2020 03:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 115.56042 * 2 1 4 4 C 1.53078 * 117.51339 * 214.30304 * 2 1 3 5 5 C 1.53000 * 117.49984 * 145.69244 * 2 1 3 6 6 H 1.08998 * 117.49630 * 214.99660 * 5 2 1 7 7 C 1.52989 * 117.50022 * 0.02562 * 5 2 1 8 8 H 1.09004 * 115.56709 * 85.61194 * 7 5 2 9 9 C 1.53006 * 117.49907 * 231.30524 * 7 5 2 10 10 C 1.52997 * 59.99924 * 107.49013 * 9 7 5 11 11 H 1.09002 * 117.49910 * 252.51140 * 10 9 7 12 12 C 1.50699 * 117.50247 * 107.49467 * 10 9 7 13 13 O 1.21281 * 119.99966 * 291.37792 * 12 10 9 14 14 N 1.34776 * 120.00426 * 111.36997 * 12 10 9 15 15 C 1.46497 * 120.00175 * 180.02562 * 14 12 10 16 16 C 1.52997 * 109.46995 * 180.02562 * 15 14 12 17 17 C 1.50707 * 109.47075 * 180.02562 * 16 15 14 18 18 H 1.07995 * 119.99762 * 0.02562 * 17 16 15 19 19 C 1.37874 * 119.99996 * 179.97438 * 17 16 15 20 20 N 1.31518 * 120.00216 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99913 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47228 * 60.00311 * 21 19 17 23 23 H 1.48496 * 109.47085 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47434 * 300.00274 * 21 19 17 25 25 H 1.09000 * 109.46969 * 274.30627 * 1 2 3 26 26 H 1.08998 * 109.47540 * 34.30615 * 1 2 3 27 27 H 1.09001 * 109.47259 * 154.30991 * 1 2 3 28 28 H 1.08997 * 117.48785 * 145.03575 * 4 2 1 29 29 H 1.08998 * 117.51154 * 359.97438 * 4 2 1 30 30 H 1.08999 * 117.49661 * 214.97815 * 9 7 5 31 31 H 1.08999 * 117.49552 * 359.97335 * 9 7 5 32 32 H 0.97006 * 119.99760 * 0.02562 * 14 12 10 33 33 H 1.08997 * 109.47497 * 300.00332 * 15 14 12 34 34 H 1.09000 * 109.46895 * 60.00571 * 15 14 12 35 35 H 1.09002 * 109.47629 * 299.99644 * 16 15 14 36 36 H 1.08996 * 109.47432 * 60.00069 * 16 15 14 37 37 H 0.96997 * 119.99761 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2372 -1.1215 -0.7651 5 6 2.2365 -1.1210 0.7649 6 1 3.1714 -0.8751 1.2684 7 6 1.3590 -2.1565 1.4708 8 1 1.0279 -2.9918 0.8535 9 6 1.6484 -2.4398 2.9463 10 6 0.3987 -1.6513 2.5494 11 1 0.3921 -0.5811 2.7561 12 6 -0.9323 -2.3463 2.6771 13 8 -1.2077 -3.2693 1.9401 14 7 -1.8168 -1.9424 3.6105 15 6 -3.1105 -2.6184 3.7349 16 6 -3.9186 -1.9697 4.8605 17 6 -5.2492 -2.6656 4.9890 18 1 -5.4937 -3.4884 4.3336 19 6 -6.1539 -2.2524 5.9439 20 7 -5.8559 -1.2507 6.7423 21 14 -7.8035 -3.1144 6.1026 22 1 -7.5840 -4.5498 6.4137 23 1 -8.5878 -2.4849 7.1952 24 1 -8.5502 -2.9935 4.8247 25 1 -0.3633 0.0772 1.0248 26 1 -0.3634 0.8489 -0.5792 27 1 -0.3634 -0.9261 -0.4455 28 1 3.1723 -0.8754 -1.2680 29 1 1.6124 -1.8595 -1.2681 30 1 1.5078 -3.4613 3.2996 31 1 2.4642 -1.8886 3.4139 32 1 -1.5967 -1.2040 4.1998 33 1 -3.6585 -2.5297 2.7969 34 1 -2.9494 -3.6719 3.9634 35 1 -3.3708 -2.0581 5.7988 36 1 -4.0797 -0.9163 4.6318 37 1 -6.4925 -0.9598 7.4138 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717219106.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:45 Heat of formation + Delta-G solvation = -10.835780 kcal Electronic energy + Delta-G solvation = -16345.056347 eV Core-core repulsion = 13702.102604 eV Total energy + Delta-G solvation = -2642.953743 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.92078 -38.20242 -35.36655 -34.64002 -32.81574 -29.74777 -28.69831 -25.54836 -23.86578 -23.18549 -21.49779 -20.90997 -19.87004 -19.19618 -17.01881 -16.34915 -15.95665 -15.15571 -14.94786 -14.57851 -14.38154 -13.76212 -13.32599 -13.06716 -12.79471 -12.39234 -12.29420 -12.11534 -11.61626 -11.39141 -11.21298 -11.02980 -10.86826 -10.71917 -10.63400 -10.31679 -9.87773 -9.77843 -9.65103 -9.42439 -9.15469 -8.52932 -8.34072 -6.09186 -4.12184 2.81724 3.31303 3.34995 3.37235 3.42668 3.75050 3.92613 4.40440 4.48036 4.64598 4.71248 4.95030 4.96079 5.18591 5.22419 5.27708 5.29329 5.37683 5.63005 5.67461 5.73651 5.79753 5.92375 6.00419 6.03319 6.21495 6.29378 6.35179 6.36410 6.74147 6.94633 7.51918 7.61929 7.88913 8.05252 8.28194 8.69139 8.93651 9.52601 11.02386 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.048835 B = 0.004007 C = 0.003953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.216849 B = 6985.417346 C = 7081.542588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.147 4.147 3 H 0.102 0.898 4 C -0.173 4.173 5 C -0.124 4.124 6 H 0.106 0.894 7 C -0.089 4.089 8 H 0.117 0.883 9 C -0.148 4.148 10 C -0.181 4.181 11 H 0.122 0.878 12 C 0.534 3.466 13 O -0.553 6.553 14 N -0.718 5.718 15 C 0.122 3.878 16 C 0.013 3.987 17 C -0.523 4.523 18 H 0.059 0.941 19 C 0.059 3.941 20 N -0.894 5.894 21 Si 0.897 3.103 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.276 1.276 25 H 0.063 0.937 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.092 0.908 29 H 0.096 0.904 30 H 0.099 0.901 31 H 0.102 0.898 32 H 0.398 0.602 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.022 0.978 36 H 0.022 0.978 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.419 3.112 -9.569 19.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.165 4.165 3 H 0.120 0.880 4 C -0.210 4.210 5 C -0.142 4.142 6 H 0.124 0.876 7 C -0.107 4.107 8 H 0.135 0.865 9 C -0.185 4.185 10 C -0.202 4.202 11 H 0.140 0.860 12 C 0.319 3.681 13 O -0.431 6.431 14 N -0.367 5.367 15 C -0.001 4.001 16 C -0.025 4.025 17 C -0.561 4.561 18 H 0.077 0.923 19 C -0.143 4.143 20 N -0.533 5.533 21 Si 0.725 3.275 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.201 1.201 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.111 0.889 29 H 0.114 0.886 30 H 0.118 0.882 31 H 0.120 0.880 32 H 0.232 0.768 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.041 0.959 36 H 0.041 0.959 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 16.101 2.550 -9.934 19.090 hybrid contribution -0.847 0.061 0.554 1.014 sum 15.254 2.612 -9.380 18.097 Atomic orbital electron populations 1.21403 0.92424 1.01981 1.02375 1.22384 0.95810 0.93974 1.04380 0.88036 1.23146 1.02407 1.01851 0.93561 1.21850 0.99790 0.99012 0.93596 0.87569 1.21710 0.98470 0.99653 0.90917 0.86470 1.23032 0.96860 1.01170 0.97456 1.22363 0.90186 1.00276 1.07418 0.86016 1.19618 0.84688 0.83351 0.80430 1.90656 1.78389 1.30035 1.44070 1.46268 1.18044 1.36832 1.35577 1.21721 0.81155 0.96363 1.00826 1.19319 0.94476 0.96420 0.92250 1.21020 1.00214 1.17112 1.17786 0.92317 1.24994 0.98710 0.95058 0.95495 1.69947 1.36118 1.26747 1.20510 0.86567 0.83415 0.79787 0.77741 1.20103 1.21230 1.20102 0.91790 0.92516 0.92216 0.88935 0.88573 0.88234 0.87981 0.76838 0.92609 0.92643 0.95933 0.95933 0.92785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.37 8.98 37.16 0.33 -1.03 16 2 C -0.15 -1.40 6.39 -90.58 -0.58 -1.98 16 3 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 4 C -0.17 -1.56 9.90 -26.69 -0.26 -1.82 16 5 C -0.12 -1.19 5.87 -90.62 -0.53 -1.72 16 6 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 7 C -0.09 -1.03 4.76 -90.62 -0.43 -1.47 16 8 H 0.12 1.59 7.67 -51.93 -0.40 1.20 16 9 C -0.15 -1.61 9.95 -26.73 -0.27 -1.87 16 10 C -0.18 -2.30 4.20 -91.77 -0.39 -2.68 16 11 H 0.12 1.34 7.30 -51.93 -0.38 0.96 16 12 C 0.53 9.19 7.61 -10.99 -0.08 9.11 16 13 O -0.55 -11.55 16.26 5.56 0.09 -11.46 16 14 N -0.72 -12.79 5.56 -60.30 -0.33 -13.12 16 15 C 0.12 2.63 5.61 -4.05 -0.02 2.61 16 16 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 17 C -0.52 -14.61 9.11 -34.44 -0.31 -14.92 16 18 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 19 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 20 N -0.89 -26.22 13.29 55.43 0.74 -25.48 16 21 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H 0.06 0.75 5.96 -51.93 -0.31 0.44 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.74 7.90 -51.93 -0.41 0.33 16 28 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.10 0.93 8.05 -51.93 -0.42 0.51 16 30 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.40 6.16 8.47 -40.82 -0.35 5.82 16 33 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 34 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 311.72 15.07 4.70 4.70 Total: -1.00 -31.01 311.72 -8.65 -39.66 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -6.03 Total: 3.30 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: -2.78 Total: -14.03 kcal Atomic # 7 Polarization: -39.01 SS G_CDS: 0.40 Total: -38.61 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.09 Total: -11.46 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.01 -8.65 -39.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717219106.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.822 kcal (2) G-P(sol) polarization free energy of solvation -31.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds