Wall clock time and date at job start Mon Mar 30 2020 03:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 115.56042 * 2 1 4 4 C 1.53078 * 117.51339 * 214.30304 * 2 1 3 5 5 C 1.53000 * 117.49984 * 145.69244 * 2 1 3 6 6 H 1.08998 * 117.49630 * 214.99660 * 5 2 1 7 7 C 1.52989 * 117.50022 * 0.02562 * 5 2 1 8 8 H 1.09004 * 115.56709 * 85.61194 * 7 5 2 9 9 C 1.53006 * 117.49907 * 231.30524 * 7 5 2 10 10 C 1.52997 * 59.99924 * 107.49013 * 9 7 5 11 11 H 1.09002 * 117.49910 * 252.51140 * 10 9 7 12 12 C 1.50699 * 117.50247 * 107.49467 * 10 9 7 13 13 O 1.21281 * 119.99966 * 291.37792 * 12 10 9 14 14 N 1.34776 * 120.00426 * 111.36997 * 12 10 9 15 15 C 1.46497 * 120.00175 * 180.02562 * 14 12 10 16 16 C 1.52997 * 109.46995 * 180.02562 * 15 14 12 17 17 C 1.50707 * 109.47075 * 180.02562 * 16 15 14 18 18 H 1.07995 * 119.99762 * 0.02562 * 17 16 15 19 19 C 1.37874 * 119.99996 * 179.97438 * 17 16 15 20 20 N 1.31518 * 120.00216 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99913 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47228 * 60.00311 * 21 19 17 23 23 H 1.48496 * 109.47085 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47434 * 300.00274 * 21 19 17 25 25 H 1.09000 * 109.46969 * 274.30627 * 1 2 3 26 26 H 1.08998 * 109.47540 * 34.30615 * 1 2 3 27 27 H 1.09001 * 109.47259 * 154.30991 * 1 2 3 28 28 H 1.08997 * 117.48785 * 145.03575 * 4 2 1 29 29 H 1.08998 * 117.51154 * 359.97438 * 4 2 1 30 30 H 1.08999 * 117.49661 * 214.97815 * 9 7 5 31 31 H 1.08999 * 117.49552 * 359.97335 * 9 7 5 32 32 H 0.97006 * 119.99760 * 0.02562 * 14 12 10 33 33 H 1.08997 * 109.47497 * 300.00332 * 15 14 12 34 34 H 1.09000 * 109.46895 * 60.00571 * 15 14 12 35 35 H 1.09002 * 109.47629 * 299.99644 * 16 15 14 36 36 H 1.08996 * 109.47432 * 60.00069 * 16 15 14 37 37 H 0.96997 * 119.99761 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2372 -1.1215 -0.7651 5 6 2.2365 -1.1210 0.7649 6 1 3.1714 -0.8751 1.2684 7 6 1.3590 -2.1565 1.4708 8 1 1.0279 -2.9918 0.8535 9 6 1.6484 -2.4398 2.9463 10 6 0.3987 -1.6513 2.5494 11 1 0.3921 -0.5811 2.7561 12 6 -0.9323 -2.3463 2.6771 13 8 -1.2077 -3.2693 1.9401 14 7 -1.8168 -1.9424 3.6105 15 6 -3.1105 -2.6184 3.7349 16 6 -3.9186 -1.9697 4.8605 17 6 -5.2492 -2.6656 4.9890 18 1 -5.4937 -3.4884 4.3336 19 6 -6.1539 -2.2524 5.9439 20 7 -5.8559 -1.2507 6.7423 21 14 -7.8035 -3.1144 6.1026 22 1 -7.5840 -4.5498 6.4137 23 1 -8.5878 -2.4849 7.1952 24 1 -8.5502 -2.9935 4.8247 25 1 -0.3633 0.0772 1.0248 26 1 -0.3634 0.8489 -0.5792 27 1 -0.3634 -0.9261 -0.4455 28 1 3.1723 -0.8754 -1.2680 29 1 1.6124 -1.8595 -1.2681 30 1 1.5078 -3.4613 3.2996 31 1 2.4642 -1.8886 3.4139 32 1 -1.5967 -1.2040 4.1998 33 1 -3.6585 -2.5297 2.7969 34 1 -2.9494 -3.6719 3.9634 35 1 -3.3708 -2.0581 5.7988 36 1 -4.0797 -0.9163 4.6318 37 1 -6.4925 -0.9598 7.4138 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717219106.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:45 Heat of formation + Delta-G solvation = -29.346370 kcal Electronic energy + Delta-G solvation = -16345.859026 eV Core-core repulsion = 13702.102604 eV Total energy + Delta-G solvation = -2643.756423 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.14700 -39.26396 -36.73474 -35.99151 -34.81931 -31.64246 -29.56934 -27.29735 -25.16167 -24.26668 -22.77390 -22.23681 -21.20952 -20.07083 -18.63535 -18.13403 -16.84859 -16.54471 -16.51432 -16.41711 -15.56383 -15.10151 -14.76220 -14.31023 -14.21636 -13.78257 -13.35706 -13.24816 -13.08995 -12.93929 -12.56230 -12.36669 -12.26908 -12.22085 -11.77355 -11.71174 -11.52120 -11.48008 -10.87061 -10.69036 -10.61403 -10.35728 -10.03515 -8.25364 -6.36315 1.40898 1.43252 1.50794 1.51373 2.18837 2.42656 2.71805 3.03547 3.09149 3.58115 3.76006 3.84370 3.98461 4.10455 4.23474 4.35304 4.44596 4.45701 4.48759 4.57498 4.80986 4.82880 4.89152 4.93939 4.98604 5.03769 5.20231 5.25285 5.27914 5.36504 5.46985 5.48042 5.55548 5.76772 6.14352 6.62666 6.76460 7.27416 7.33072 8.86292 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.048835 B = 0.004007 C = 0.003953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.216849 B = 6985.417346 C = 7081.542588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.148 4.148 3 H 0.122 0.878 4 C -0.172 4.172 5 C -0.122 4.122 6 H 0.131 0.869 7 C -0.088 4.088 8 H 0.090 0.910 9 C -0.130 4.130 10 C -0.187 4.187 11 H 0.145 0.855 12 C 0.532 3.468 13 O -0.594 6.594 14 N -0.714 5.714 15 C 0.140 3.860 16 C 0.024 3.976 17 C -0.550 4.550 18 H 0.058 0.942 19 C 0.008 3.992 20 N -0.926 5.926 21 Si 0.965 3.035 22 H -0.268 1.268 23 H -0.279 1.279 24 H -0.269 1.269 25 H 0.055 0.945 26 H 0.065 0.935 27 H 0.036 0.964 28 H 0.114 0.886 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.137 0.863 32 H 0.411 0.589 33 H 0.044 0.956 34 H 0.044 0.956 35 H 0.009 0.991 36 H 0.009 0.991 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.721 3.768 -9.600 20.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.166 4.166 3 H 0.140 0.860 4 C -0.209 4.209 5 C -0.140 4.140 6 H 0.149 0.851 7 C -0.107 4.107 8 H 0.108 0.892 9 C -0.167 4.167 10 C -0.208 4.208 11 H 0.163 0.837 12 C 0.320 3.680 13 O -0.476 6.476 14 N -0.364 5.364 15 C 0.017 3.983 16 C -0.014 4.014 17 C -0.589 4.589 18 H 0.076 0.924 19 C -0.191 4.191 20 N -0.565 5.565 21 Si 0.790 3.210 22 H -0.193 1.193 23 H -0.204 1.204 24 H -0.194 1.194 25 H 0.073 0.927 26 H 0.084 0.916 27 H 0.055 0.945 28 H 0.132 0.868 29 H 0.100 0.900 30 H 0.107 0.893 31 H 0.155 0.845 32 H 0.247 0.753 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.027 0.973 36 H 0.027 0.973 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 17.426 3.222 -9.962 20.329 hybrid contribution -1.243 -0.156 0.534 1.361 sum 16.183 3.066 -9.428 18.978 Atomic orbital electron populations 1.21386 0.94052 1.01151 1.01714 1.22421 0.94568 0.95010 1.04579 0.85997 1.23205 1.03013 1.01255 0.93440 1.21902 1.00098 0.98186 0.93775 0.85109 1.21683 0.98266 0.99489 0.91218 0.89165 1.23181 0.96125 1.00677 0.96736 1.22301 0.87947 1.01100 1.09456 0.83737 1.20403 0.85861 0.82717 0.79029 1.90635 1.79441 1.32046 1.45439 1.46107 1.16904 1.37070 1.36336 1.21215 0.82578 0.95696 0.98844 1.19123 0.94032 0.95570 0.92641 1.21441 1.01712 1.17548 1.18166 0.92416 1.25870 1.02529 0.95689 0.94984 1.70049 1.37527 1.27923 1.21011 0.85496 0.78701 0.78812 0.78036 1.19334 1.20437 1.19365 0.92657 0.91604 0.94528 0.86800 0.90022 0.89327 0.84519 0.75317 0.93797 0.93761 0.97254 0.97271 0.92467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.67 8.98 71.98 0.65 -2.02 16 2 C -0.15 -2.45 6.39 -10.77 -0.07 -2.52 16 3 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 4 C -0.17 -2.77 9.90 30.62 0.30 -2.46 16 5 C -0.12 -1.99 5.87 -10.80 -0.06 -2.05 16 6 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 7 C -0.09 -1.93 4.76 -10.80 -0.05 -1.98 16 8 H 0.09 2.50 7.67 -2.38 -0.02 2.48 16 9 C -0.13 -2.53 9.95 30.60 0.30 -2.23 16 10 C -0.19 -4.50 4.20 -11.54 -0.05 -4.55 16 11 H 0.15 2.84 7.30 -2.39 -0.02 2.82 16 12 C 0.53 18.45 7.61 87.66 0.67 19.12 16 13 O -0.59 -25.57 16.26 -3.03 -0.05 -25.62 16 14 N -0.71 -25.65 5.56 -463.08 -2.57 -28.22 16 15 C 0.14 6.24 5.61 86.38 0.48 6.73 16 16 C 0.02 1.22 5.09 29.85 0.15 1.37 16 17 C -0.55 -31.18 9.11 25.60 0.23 -30.95 16 18 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 19 C 0.01 0.46 5.46 84.65 0.46 0.93 16 20 N -0.93 -54.53 13.29 21.45 0.28 -54.24 16 21 Si 0.97 43.86 29.54 68.60 2.03 45.89 16 22 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 23 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 24 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 25 H 0.05 1.25 5.96 -2.39 -0.01 1.23 16 26 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.04 0.92 7.90 -2.39 -0.02 0.90 16 28 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.08 1.55 8.05 -2.39 -0.02 1.53 16 30 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.14 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.41 12.61 8.47 -92.70 -0.79 11.82 16 33 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 Total: -1.00 -67.35 311.72 2.97 -64.38 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: 0.26 Total: 18.44 kcal Atomic # 6 Polarization: -23.64 SS G_CDS: 3.02 Total: -20.62 kcal Atomic # 7 Polarization: -80.18 SS G_CDS: -2.29 Total: -82.47 kcal Atomic # 8 Polarization: -25.57 SS G_CDS: -0.05 Total: -25.62 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -67.35 2.97 -64.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717219106.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.038 kcal (2) G-P(sol) polarization free energy of solvation -67.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds