Wall clock time and date at job start Mon Mar 30 2020 03:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46499 * 109.47501 * 2 1 4 4 C 1.37096 * 119.99993 * 95.52846 * 3 2 1 5 5 H 1.08004 * 120.00201 * 219.10697 * 4 3 2 6 6 C 1.38957 * 119.99946 * 39.10163 * 4 3 2 7 7 N 1.31414 * 119.99687 * 19.98523 * 6 4 3 8 8 Si 1.86793 * 120.00003 * 199.98587 * 6 4 3 9 9 H 1.48499 * 109.47417 * 90.00164 * 8 6 4 10 10 H 1.48502 * 109.46980 * 210.00002 * 8 6 4 11 11 H 1.48502 * 109.47301 * 330.00016 * 8 6 4 12 12 C 1.34775 * 119.99995 * 275.53110 * 3 2 1 13 13 O 1.21286 * 119.99961 * 179.97438 * 12 3 2 14 14 C 1.50698 * 119.99992 * 0.02562 * 12 3 2 15 15 H 1.09004 * 115.55151 * 327.00553 * 14 12 3 16 16 C 1.53000 * 117.49614 * 181.34069 * 14 12 3 17 17 C 1.52998 * 117.49999 * 112.71798 * 14 12 3 18 18 H 1.09000 * 117.49820 * 214.97668 * 17 14 12 19 19 C 1.53001 * 117.49945 * 0.02562 * 17 14 12 20 20 H 1.08997 * 115.54907 * 30.13540 * 19 17 14 21 21 C 1.52999 * 117.49513 * 244.43107 * 19 17 14 22 22 C 1.52999 * 60.00072 * 252.50950 * 21 19 17 23 23 H 1.09003 * 117.50250 * 252.51419 * 22 21 19 24 24 C 1.53001 * 117.52097 * 107.48038 * 22 21 19 25 25 H 1.08997 * 109.46927 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46654 * 299.99628 * 1 2 3 27 27 H 1.08991 * 109.46882 * 59.99479 * 1 2 3 28 28 H 1.09003 * 109.47238 * 120.00312 * 2 1 3 29 29 H 1.08998 * 109.46804 * 239.99868 * 2 1 3 30 30 H 0.97000 * 119.99652 * 179.97438 * 7 6 4 31 31 H 1.08996 * 117.50236 * 0.02562 * 16 14 12 32 32 H 1.09007 * 117.49768 * 145.02045 * 16 14 12 33 33 H 1.09003 * 117.50186 * 359.97438 * 21 19 17 34 34 H 1.08997 * 117.49985 * 145.01963 * 21 19 17 35 35 H 1.09006 * 109.46791 * 351.37706 * 24 22 21 36 36 H 1.09002 * 109.47363 * 111.36991 * 24 22 21 37 37 H 1.08998 * 109.47547 * 231.37653 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.3548 1.9893 1.1818 5 1 2.1103 3.0289 1.3429 6 6 3.0103 1.2681 2.1723 7 7 3.6515 0.1629 1.8651 8 14 2.9801 1.8697 3.9405 9 1 1.8068 1.2885 4.6411 10 1 4.2265 1.4472 4.6284 11 1 2.8830 3.3514 3.9577 12 6 2.1371 2.0540 -1.1618 13 8 2.5410 3.1976 -1.1617 14 6 1.7667 1.3858 -2.4607 15 1 1.9528 0.3127 -2.5072 16 6 1.9533 2.1915 -3.7479 17 6 0.5462 1.9246 -3.2096 18 1 -0.0711 1.2061 -3.7488 19 6 -0.2046 3.1012 -2.5826 20 1 0.4022 3.7810 -1.9845 21 6 -1.6470 2.8598 -2.1332 22 6 -1.3646 3.7034 -3.3780 23 1 -1.5212 4.7795 -3.3029 24 6 -1.6846 3.0835 -4.7397 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 4.1093 -0.3403 2.5565 31 1 2.3443 3.2047 -3.6553 32 1 2.2617 1.6484 -4.6414 33 1 -2.0613 1.8630 -2.2846 34 1 -1.9895 3.3808 -1.2392 35 1 -1.9402 2.0320 -4.6091 36 1 -2.5271 3.6091 -5.1893 37 1 -0.8145 3.1678 -5.3908 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717219751.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:57 Heat of formation + Delta-G solvation = 9.544738 kcal Electronic energy + Delta-G solvation = -17575.646441 eV Core-core repulsion = 14933.576463 eV Total energy + Delta-G solvation = -2642.069978 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.33284 -37.51826 -35.27658 -34.36584 -31.90719 -29.34431 -28.35763 -25.68645 -23.49153 -22.80264 -21.88984 -21.13851 -19.30506 -17.95252 -16.62625 -16.17393 -15.65825 -14.97972 -14.25028 -13.93841 -13.66000 -13.16032 -12.98210 -12.73423 -12.61892 -12.24593 -11.87721 -11.71243 -11.34219 -11.27423 -11.04152 -10.86711 -10.83314 -10.70184 -10.41744 -10.26289 -10.07230 -9.89837 -9.44101 -9.00724 -8.83508 -8.29268 -7.36653 -6.27751 -3.92843 3.19240 3.28368 3.33214 3.61329 4.06763 4.19694 4.61315 4.73810 4.93704 5.05090 5.10332 5.31158 5.42274 5.51441 5.60681 5.63771 5.72337 5.90509 5.96003 5.96193 6.05742 6.10413 6.14303 6.18443 6.32831 6.36053 6.45928 6.52767 6.62541 6.66416 6.79244 6.95623 7.30585 7.63258 8.35249 8.59620 9.26713 9.48742 10.12766 10.77304 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.033367 B = 0.007128 C = 0.006960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.963089 B = 3927.028077 C = 4022.019515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.105 3.895 3 N -0.436 5.436 4 C -0.306 4.306 5 H 0.088 0.912 6 C 0.037 3.963 7 N -0.871 5.871 8 Si 0.916 3.084 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.269 1.269 12 C 0.495 3.505 13 O -0.583 6.583 14 C -0.169 4.169 15 H 0.111 0.889 16 C -0.150 4.150 17 C -0.100 4.100 18 H 0.101 0.899 19 C -0.113 4.113 20 H 0.117 0.883 21 C -0.172 4.172 22 C -0.158 4.158 23 H 0.098 0.902 24 C -0.117 4.117 25 H 0.046 0.954 26 H 0.054 0.946 27 H 0.048 0.952 28 H 0.102 0.898 29 H 0.046 0.954 30 H 0.267 0.733 31 H 0.103 0.897 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.053 0.947 36 H 0.052 0.948 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.918 -0.806 -8.387 12.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.019 4.019 3 N -0.155 5.155 4 C -0.434 4.434 5 H 0.106 0.894 6 C -0.167 4.167 7 N -0.509 5.509 8 Si 0.743 3.257 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.194 1.194 12 C 0.283 3.717 13 O -0.467 6.467 14 C -0.190 4.190 15 H 0.129 0.871 16 C -0.188 4.188 17 C -0.119 4.119 18 H 0.119 0.881 19 C -0.131 4.131 20 H 0.135 0.865 21 C -0.209 4.209 22 C -0.176 4.176 23 H 0.117 0.883 24 C -0.174 4.174 25 H 0.065 0.935 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.120 0.880 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.122 0.878 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.595 -0.398 -8.247 11.918 hybrid contribution 0.059 -0.089 0.975 0.981 sum -8.535 -0.488 -7.272 11.224 Atomic orbital electron populations 1.22209 0.98171 1.00048 1.01799 1.21436 0.91715 0.85608 1.03149 1.43352 1.55683 1.11730 1.04710 1.19394 1.35951 0.97542 0.90555 0.89445 1.25387 0.94189 0.96637 1.00508 1.69953 1.30041 1.17290 1.33637 0.86087 0.77533 0.79464 0.82585 1.20375 1.21037 1.19369 1.19326 0.81350 0.87251 0.83762 1.90486 1.50709 1.18828 1.86673 1.22451 1.03458 0.99628 0.93484 0.87102 1.22893 0.98235 1.02140 0.95519 1.21599 0.89600 0.98575 1.02083 0.88096 1.21924 0.89994 0.99151 1.02012 0.86503 1.23031 0.99401 1.00701 0.97810 1.22323 1.04144 0.98441 0.92719 0.88343 1.21297 1.00915 0.99984 0.95165 0.93504 0.92703 0.93250 0.88047 0.93523 0.92347 0.87814 0.89027 0.89096 0.89149 0.92781 0.92874 0.92187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.04 10.16 37.16 0.38 -2.66 16 2 C 0.11 2.34 5.42 -4.04 -0.02 2.31 16 3 N -0.44 -11.25 2.52 -114.81 -0.29 -11.54 16 4 C -0.31 -8.64 8.87 -14.93 -0.13 -8.77 16 5 H 0.09 2.58 7.79 -52.48 -0.41 2.17 16 6 C 0.04 0.99 4.92 -17.46 -0.09 0.91 16 7 N -0.87 -23.96 11.58 55.50 0.64 -23.32 16 8 Si 0.92 20.94 29.60 -169.99 -5.03 15.91 16 9 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 12 C 0.49 12.32 6.38 -10.99 -0.07 12.25 16 13 O -0.58 -16.45 15.05 5.55 0.08 -16.36 16 14 C -0.17 -3.27 4.83 -91.77 -0.44 -3.71 16 15 H 0.11 2.00 6.48 -51.93 -0.34 1.66 16 16 C -0.15 -2.52 9.76 -26.73 -0.26 -2.78 16 17 C -0.10 -1.61 4.94 -90.62 -0.45 -2.06 16 18 H 0.10 1.40 7.35 -51.93 -0.38 1.02 16 19 C -0.11 -1.89 5.24 -90.62 -0.48 -2.37 16 20 H 0.12 2.41 6.59 -51.93 -0.34 2.07 16 21 C -0.17 -2.51 9.90 -26.73 -0.26 -2.77 16 22 C -0.16 -2.14 6.41 -90.62 -0.58 -2.72 16 23 H 0.10 1.28 8.14 -51.93 -0.42 0.85 16 24 C -0.12 -1.30 9.09 37.16 0.34 -0.96 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.05 0.87 7.51 -51.93 -0.39 0.48 16 28 H 0.10 2.48 5.67 -51.93 -0.29 2.19 16 29 H 0.05 0.96 6.23 -51.93 -0.32 0.63 16 30 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 31 H 0.10 1.93 7.67 -51.93 -0.40 1.53 16 32 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.09 1.23 8.05 -51.93 -0.42 0.81 16 34 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 35 H 0.05 0.58 7.44 -51.93 -0.39 0.19 16 36 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 302.07 15.07 4.55 4.55 Total: -1.00 -30.60 302.07 -7.88 -38.49 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -5.77 Total: 5.61 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: -2.07 Total: -13.33 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: 0.35 Total: -34.86 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: 0.08 Total: -16.36 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.03 Total: 15.91 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.60 -7.88 -38.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717219751.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.033 kcal (2) G-P(sol) polarization free energy of solvation -30.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds