Wall clock time and date at job start Mon Mar 30 2020 03:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46499 * 109.47501 * 2 1 4 4 C 1.37096 * 119.99993 * 95.52846 * 3 2 1 5 5 H 1.08004 * 120.00201 * 219.10697 * 4 3 2 6 6 C 1.38957 * 119.99946 * 39.10163 * 4 3 2 7 7 N 1.31414 * 119.99687 * 19.98523 * 6 4 3 8 8 Si 1.86793 * 120.00003 * 199.98587 * 6 4 3 9 9 H 1.48499 * 109.47417 * 90.00164 * 8 6 4 10 10 H 1.48502 * 109.46980 * 210.00002 * 8 6 4 11 11 H 1.48502 * 109.47301 * 330.00016 * 8 6 4 12 12 C 1.34775 * 119.99995 * 275.53110 * 3 2 1 13 13 O 1.21286 * 119.99961 * 179.97438 * 12 3 2 14 14 C 1.50698 * 119.99992 * 0.02562 * 12 3 2 15 15 H 1.09004 * 115.55151 * 327.00553 * 14 12 3 16 16 C 1.53000 * 117.49614 * 181.34069 * 14 12 3 17 17 C 1.52998 * 117.49999 * 112.71798 * 14 12 3 18 18 H 1.09000 * 117.49820 * 214.97668 * 17 14 12 19 19 C 1.53001 * 117.49945 * 0.02562 * 17 14 12 20 20 H 1.08997 * 115.54907 * 30.13540 * 19 17 14 21 21 C 1.52999 * 117.49513 * 244.43107 * 19 17 14 22 22 C 1.52999 * 60.00072 * 252.50950 * 21 19 17 23 23 H 1.09003 * 117.50250 * 252.51419 * 22 21 19 24 24 C 1.53001 * 117.52097 * 107.48038 * 22 21 19 25 25 H 1.08997 * 109.46927 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46654 * 299.99628 * 1 2 3 27 27 H 1.08991 * 109.46882 * 59.99479 * 1 2 3 28 28 H 1.09003 * 109.47238 * 120.00312 * 2 1 3 29 29 H 1.08998 * 109.46804 * 239.99868 * 2 1 3 30 30 H 0.97000 * 119.99652 * 179.97438 * 7 6 4 31 31 H 1.08996 * 117.50236 * 0.02562 * 16 14 12 32 32 H 1.09007 * 117.49768 * 145.02045 * 16 14 12 33 33 H 1.09003 * 117.50186 * 359.97438 * 21 19 17 34 34 H 1.08997 * 117.49985 * 145.01963 * 21 19 17 35 35 H 1.09006 * 109.46791 * 351.37706 * 24 22 21 36 36 H 1.09002 * 109.47363 * 111.36991 * 24 22 21 37 37 H 1.08998 * 109.47547 * 231.37653 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.3548 1.9893 1.1818 5 1 2.1103 3.0289 1.3429 6 6 3.0103 1.2681 2.1723 7 7 3.6515 0.1629 1.8651 8 14 2.9801 1.8697 3.9405 9 1 1.8068 1.2885 4.6411 10 1 4.2265 1.4472 4.6284 11 1 2.8830 3.3514 3.9577 12 6 2.1371 2.0540 -1.1618 13 8 2.5410 3.1976 -1.1617 14 6 1.7667 1.3858 -2.4607 15 1 1.9528 0.3127 -2.5072 16 6 1.9533 2.1915 -3.7479 17 6 0.5462 1.9246 -3.2096 18 1 -0.0711 1.2061 -3.7488 19 6 -0.2046 3.1012 -2.5826 20 1 0.4022 3.7810 -1.9845 21 6 -1.6470 2.8598 -2.1332 22 6 -1.3646 3.7034 -3.3780 23 1 -1.5212 4.7795 -3.3029 24 6 -1.6846 3.0835 -4.7397 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 4.1093 -0.3403 2.5565 31 1 2.3443 3.2047 -3.6553 32 1 2.2617 1.6484 -4.6414 33 1 -2.0613 1.8630 -2.2846 34 1 -1.9895 3.3808 -1.2392 35 1 -1.9402 2.0320 -4.6091 36 1 -2.5271 3.6091 -5.1893 37 1 -0.8145 3.1678 -5.3908 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717219751.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:57 Heat of formation + Delta-G solvation = -7.578815 kcal Electronic energy + Delta-G solvation = -17576.388974 eV Core-core repulsion = 14933.576463 eV Total energy + Delta-G solvation = -2642.812511 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.96469 -39.00300 -36.99927 -36.00736 -33.93010 -31.11441 -29.30208 -27.63666 -24.97198 -24.37082 -23.57635 -22.31202 -20.68470 -19.65932 -18.56977 -17.80952 -17.13761 -16.82400 -16.00727 -15.38461 -15.33969 -14.72780 -14.42018 -14.15285 -13.89631 -13.61848 -13.53342 -13.22406 -12.96416 -12.83684 -12.59894 -12.38654 -12.34299 -12.15107 -12.02812 -11.92652 -11.72054 -11.33662 -10.88347 -10.64721 -10.33922 -10.15963 -9.38504 -8.34396 -6.07907 1.35665 1.38424 1.50541 1.96376 2.28614 2.67097 3.00310 3.06225 3.34746 3.62463 3.87159 3.97666 4.07423 4.28101 4.29075 4.39315 4.42511 4.50604 4.54532 4.68436 4.83092 4.91842 4.93011 4.98748 5.06176 5.08564 5.14714 5.25881 5.28428 5.31550 5.43902 5.46791 5.51987 5.59209 6.23645 6.58906 7.21579 7.52310 8.15385 8.69302 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.033367 B = 0.007128 C = 0.006960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.963089 B = 3927.028077 C = 4022.019515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.105 3.895 3 N -0.451 5.451 4 C -0.341 4.341 5 H 0.056 0.944 6 C 0.003 3.997 7 N -0.891 5.891 8 Si 0.980 3.020 9 H -0.261 1.261 10 H -0.275 1.275 11 H -0.277 1.277 12 C 0.483 3.517 13 O -0.633 6.633 14 C -0.192 4.192 15 H 0.129 0.871 16 C -0.143 4.143 17 C -0.068 4.068 18 H 0.141 0.859 19 C -0.148 4.148 20 H 0.064 0.936 21 C -0.168 4.168 22 C -0.134 4.134 23 H 0.099 0.901 24 C -0.115 4.115 25 H 0.082 0.918 26 H 0.036 0.964 27 H 0.059 0.941 28 H 0.077 0.923 29 H 0.063 0.937 30 H 0.273 0.727 31 H 0.074 0.926 32 H 0.132 0.868 33 H 0.111 0.889 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.734 -2.453 -9.790 14.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 N -0.169 5.169 4 C -0.469 4.469 5 H 0.074 0.926 6 C -0.199 4.199 7 N -0.529 5.529 8 Si 0.804 3.196 9 H -0.186 1.186 10 H -0.200 1.200 11 H -0.202 1.202 12 C 0.273 3.727 13 O -0.521 6.521 14 C -0.213 4.213 15 H 0.147 0.853 16 C -0.180 4.180 17 C -0.087 4.087 18 H 0.159 0.841 19 C -0.167 4.167 20 H 0.082 0.918 21 C -0.205 4.205 22 C -0.152 4.152 23 H 0.117 0.883 24 C -0.172 4.172 25 H 0.101 0.899 26 H 0.055 0.945 27 H 0.078 0.922 28 H 0.095 0.905 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.150 0.850 33 H 0.130 0.870 34 H 0.099 0.901 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.424 -2.080 -9.656 14.361 hybrid contribution 0.657 0.486 1.403 1.623 sum -9.768 -1.594 -8.253 12.886 Atomic orbital electron populations 1.22075 0.95187 1.02204 1.01389 1.21530 0.94132 0.83525 1.02669 1.43630 1.55909 1.12968 1.04405 1.19309 1.37906 0.96934 0.92780 0.92598 1.26122 0.93181 0.96674 1.03945 1.70015 1.29969 1.17920 1.34989 0.85145 0.78356 0.78417 0.77699 1.18565 1.19991 1.20210 1.20246 0.80172 0.86756 0.85484 1.90437 1.52774 1.21158 1.87736 1.22324 1.07462 1.00198 0.91355 0.85292 1.22995 0.98986 1.00650 0.95404 1.21736 0.89061 0.98057 0.99820 0.84100 1.21770 0.90838 0.99854 1.04211 0.91752 1.23113 0.97112 1.01980 0.98281 1.22449 1.00264 0.98673 0.93817 0.88327 1.21347 1.01867 1.00759 0.93191 0.89914 0.94503 0.92236 0.90498 0.91847 0.91748 0.90698 0.84989 0.87033 0.90095 0.91521 0.90954 0.91803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.35 10.16 71.98 0.73 -4.62 16 2 C 0.10 4.64 5.42 86.38 0.47 5.11 16 3 N -0.45 -24.06 2.52 -635.53 -1.60 -25.66 16 4 C -0.34 -20.17 8.87 84.04 0.75 -19.43 16 5 H 0.06 3.56 7.79 -2.91 -0.02 3.54 16 6 C 0.00 0.17 4.92 84.93 0.42 0.59 16 7 N -0.89 -49.66 11.58 21.67 0.25 -49.41 16 8 Si 0.98 43.73 29.60 68.60 2.03 45.76 16 9 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 10 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 11 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 12 C 0.48 24.99 6.38 87.66 0.56 25.55 16 13 O -0.63 -38.19 15.05 -3.05 -0.05 -38.24 16 14 C -0.19 -7.29 4.83 -11.54 -0.06 -7.34 16 15 H 0.13 4.36 6.48 -2.38 -0.02 4.35 16 16 C -0.14 -4.59 9.76 30.59 0.30 -4.29 16 17 C -0.07 -2.05 4.94 -10.79 -0.05 -2.10 16 18 H 0.14 3.17 7.35 -2.39 -0.02 3.15 16 19 C -0.15 -4.94 5.24 -10.79 -0.06 -5.00 16 20 H 0.06 2.85 6.59 -2.39 -0.02 2.83 16 21 C -0.17 -4.62 9.90 30.59 0.30 -4.31 16 22 C -0.13 -3.35 6.41 -10.79 -0.07 -3.41 16 23 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 24 C -0.11 -2.08 9.09 71.98 0.65 -1.43 16 25 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 26 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.06 1.98 7.51 -2.39 -0.02 1.96 16 28 H 0.08 3.79 5.67 -2.39 -0.01 3.78 16 29 H 0.06 2.53 6.23 -2.39 -0.01 2.52 16 30 H 0.27 14.14 8.31 -92.71 -0.77 13.37 16 31 H 0.07 2.85 7.67 -2.39 -0.02 2.84 16 32 H 0.13 3.14 8.14 -2.38 -0.02 3.12 16 33 H 0.11 2.60 8.05 -2.39 -0.02 2.58 16 34 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.07 1.07 7.44 -2.38 -0.02 1.05 16 36 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -71.25 302.07 5.62 -65.64 By element: Atomic # 1 Polarization: 21.54 SS G_CDS: 1.04 Total: 22.58 kcal Atomic # 6 Polarization: -24.62 SS G_CDS: 3.94 Total: -20.68 kcal Atomic # 7 Polarization: -73.71 SS G_CDS: -1.35 Total: -75.07 kcal Atomic # 8 Polarization: -38.19 SS G_CDS: -0.05 Total: -38.24 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -71.25 5.62 -65.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717219751.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.057 kcal (2) G-P(sol) polarization free energy of solvation -71.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds