Wall clock time and date at job start Mon Mar 30 2020 03:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08996 * 115.54752 * 2 1 4 4 C 1.53001 * 117.51664 * 214.29874 * 2 1 3 5 5 C 1.53001 * 60.00104 * 252.52099 * 4 2 1 6 6 H 1.08998 * 117.51847 * 252.52661 * 5 4 2 7 7 C 1.53001 * 117.50324 * 107.49028 * 5 4 2 8 8 H 1.09000 * 115.55748 * 323.65000 * 7 5 4 9 9 C 1.52996 * 117.50150 * 177.95858 * 7 5 4 10 10 C 1.52994 * 117.49579 * 109.33287 * 7 5 4 11 11 H 1.09002 * 117.51781 * 214.97292 * 10 7 5 12 12 C 1.50700 * 117.50316 * 0.02562 * 10 7 5 13 13 O 1.21287 * 119.99380 * 316.37071 * 12 10 7 14 14 N 1.34776 * 120.00391 * 136.36939 * 12 10 7 15 15 C 1.46497 * 119.99645 * 0.02562 * 14 12 10 16 16 C 1.46498 * 120.00277 * 180.02562 * 14 12 10 17 17 C 1.50699 * 109.46867 * 89.99882 * 16 14 12 18 18 H 1.08000 * 120.00413 * 0.02562 * 17 16 14 19 19 C 1.37881 * 119.99937 * 180.02562 * 17 16 14 20 20 N 1.31509 * 120.00471 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 119.99714 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47395 * 90.00205 * 21 19 17 23 23 H 1.48503 * 109.46975 * 210.00039 * 21 19 17 24 24 H 1.48498 * 109.47327 * 329.99667 * 21 19 17 25 25 H 1.09002 * 109.46829 * 274.32663 * 1 2 3 26 26 H 1.08993 * 109.47281 * 34.32963 * 1 2 3 27 27 H 1.09000 * 109.46794 * 154.32973 * 1 2 3 28 28 H 1.09004 * 117.49398 * 145.03028 * 4 2 1 29 29 H 1.08997 * 117.49768 * 0.02562 * 4 2 1 30 30 H 1.08994 * 117.49809 * 145.02416 * 9 7 5 31 31 H 1.09001 * 117.51676 * 359.97438 * 9 7 5 32 32 H 1.09006 * 109.46859 * 269.99426 * 15 14 12 33 33 H 1.08993 * 109.47856 * 29.99731 * 15 14 12 34 34 H 1.09005 * 109.47167 * 150.00278 * 15 14 12 35 35 H 1.09002 * 109.46709 * 330.00202 * 16 14 12 36 36 H 1.09002 * 109.47443 * 210.00233 * 16 14 12 37 37 H 0.96994 * 120.00404 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2370 -1.1210 -0.7646 5 6 2.2365 -1.1208 0.7654 6 1 3.1711 -0.8745 1.2692 7 6 1.3589 -2.1560 1.4718 8 1 0.4082 -2.3765 0.9862 9 6 1.3951 -2.1874 3.0010 10 6 2.0647 -3.3036 2.1968 11 1 1.5785 -4.2792 2.1887 12 6 3.5711 -3.3275 2.1611 13 8 4.1567 -3.0964 1.1244 14 7 4.2674 -3.6055 3.2810 15 6 3.5599 -3.8851 4.5329 16 6 5.7318 -3.6282 3.2463 17 6 6.2630 -2.2532 3.5597 18 1 5.5783 -1.4435 3.7646 19 6 7.6232 -2.0288 3.5848 20 7 8.0869 -0.8290 3.8587 21 14 8.8075 -3.4291 3.2297 22 1 9.0934 -3.4784 1.7733 23 1 10.0727 -3.2085 3.9753 24 1 8.1980 -4.7137 3.6582 25 1 -0.3633 0.0775 1.0248 26 1 -0.3633 0.8486 -0.5795 27 1 -0.3633 -0.9263 -0.4452 28 1 3.1722 -0.8750 -1.2677 29 1 1.6120 -1.8585 -1.2682 30 1 0.4683 -2.4285 3.5215 31 1 2.0444 -1.4709 3.5042 32 1 3.4056 -2.9542 5.0787 33 1 2.5949 -4.3405 4.3111 34 1 4.1531 -4.5685 5.1407 35 1 6.0671 -3.9298 2.2540 36 1 6.1019 -4.3380 3.9862 37 1 9.0437 -0.6711 3.8760 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717221677.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:50 Heat of formation + Delta-G solvation = 13.088153 kcal Electronic energy + Delta-G solvation = -17211.058276 eV Core-core repulsion = 14569.141952 eV Total energy + Delta-G solvation = -2641.916324 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.69109 -37.71612 -35.16992 -34.79054 -32.45110 -28.63343 -28.33648 -25.99148 -24.31315 -23.17386 -21.82310 -20.98568 -19.36323 -17.83193 -16.95399 -16.33579 -15.75827 -15.30936 -14.60760 -14.35460 -13.62872 -13.52517 -13.03292 -12.82050 -12.44258 -12.31704 -12.22697 -11.98543 -11.83353 -11.50304 -11.23755 -11.06746 -10.80293 -10.76176 -10.53849 -10.36388 -10.10724 -9.56743 -9.47418 -9.16051 -8.80509 -8.57226 -7.62745 -6.07223 -4.05504 3.30177 3.36086 3.37915 3.38487 3.57920 3.99222 4.33817 4.41041 4.66367 4.95793 5.01045 5.12000 5.26212 5.33991 5.44395 5.48482 5.52272 5.58507 5.70492 5.85773 5.89580 5.93373 5.97626 6.09644 6.13398 6.19806 6.23353 6.36761 6.48928 6.70090 6.73550 6.97263 7.40321 7.63480 8.32251 8.49310 8.95158 9.07419 9.53557 11.06255 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.028045 B = 0.006914 C = 0.006231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.156230 B = 4048.767540 C = 4492.451394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.164 4.164 3 H 0.100 0.900 4 C -0.159 4.159 5 C -0.105 4.105 6 H 0.110 0.890 7 C -0.089 4.089 8 H 0.107 0.893 9 C -0.160 4.160 10 C -0.176 4.176 11 H 0.122 0.878 12 C 0.535 3.465 13 O -0.530 6.530 14 N -0.596 5.596 15 C 0.091 3.909 16 C 0.215 3.785 17 C -0.526 4.526 18 H 0.073 0.927 19 C 0.072 3.928 20 N -0.898 5.898 21 Si 0.876 3.124 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.266 1.266 25 H 0.058 0.942 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.099 0.901 31 H 0.101 0.899 32 H 0.051 0.949 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.036 0.964 36 H 0.029 0.971 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.373 -3.780 -2.343 16.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.182 4.182 3 H 0.118 0.882 4 C -0.196 4.196 5 C -0.123 4.123 6 H 0.128 0.872 7 C -0.108 4.108 8 H 0.125 0.875 9 C -0.197 4.197 10 C -0.197 4.197 11 H 0.140 0.860 12 C 0.321 3.679 13 O -0.407 6.407 14 N -0.328 5.328 15 C -0.053 4.053 16 C 0.095 3.905 17 C -0.565 4.565 18 H 0.091 0.909 19 C -0.131 4.131 20 N -0.537 5.537 21 Si 0.703 3.297 22 H -0.199 1.199 23 H -0.211 1.211 24 H -0.191 1.191 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.110 0.890 29 H 0.107 0.893 30 H 0.117 0.883 31 H 0.119 0.881 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.054 0.946 36 H 0.047 0.953 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.861 -3.565 -2.858 15.548 hybrid contribution 0.813 -0.657 0.022 1.046 sum -14.048 -4.222 -2.836 14.941 Atomic orbital electron populations 1.21306 0.93326 1.01234 1.01492 1.22407 0.94946 0.94664 1.06202 0.88179 1.22913 1.01941 1.00243 0.94491 1.21727 0.99586 0.97039 0.93975 0.87185 1.21690 0.98728 0.96684 0.93670 0.87519 1.23070 1.02062 1.00604 0.93937 1.22274 0.93746 0.95922 1.07803 0.86032 1.19414 0.87310 0.77386 0.83765 1.90673 1.70768 1.48326 1.30884 1.47802 1.08233 1.68419 1.08378 1.21590 0.96248 1.00637 0.86873 1.19668 0.75300 0.98016 0.97555 1.21321 0.92574 0.94624 1.47934 0.90868 1.24859 0.98080 0.95561 0.94552 1.69894 1.13722 1.20867 1.49231 0.86847 0.80799 0.82967 0.79048 1.19932 1.21092 1.19101 0.92312 0.92758 0.92855 0.88972 0.89334 0.88310 0.88056 0.93028 0.92278 0.91782 0.94646 0.95346 0.92605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.25 9.02 37.16 0.34 -0.92 16 2 C -0.16 -2.24 6.41 -90.61 -0.58 -2.82 16 3 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 4 C -0.16 -2.41 9.90 -26.73 -0.26 -2.67 16 5 C -0.11 -1.73 4.30 -90.62 -0.39 -2.12 16 6 H 0.11 2.27 7.24 -51.93 -0.38 1.89 16 7 C -0.09 -1.26 5.21 -90.62 -0.47 -1.73 16 8 H 0.11 1.26 7.12 -51.93 -0.37 0.89 16 9 C -0.16 -2.09 9.17 -26.73 -0.24 -2.33 16 10 C -0.18 -2.68 4.53 -91.77 -0.42 -3.09 16 11 H 0.12 1.53 8.14 -51.93 -0.42 1.11 16 12 C 0.54 11.08 6.62 -10.99 -0.07 11.01 16 13 O -0.53 -13.11 14.87 5.55 0.08 -13.03 16 14 N -0.60 -12.52 2.86 -182.96 -0.52 -13.04 16 15 C 0.09 1.43 9.75 59.85 0.58 2.02 16 16 C 0.22 5.36 4.27 -5.20 -0.02 5.34 16 17 C -0.53 -15.29 9.94 -34.44 -0.34 -15.63 16 18 H 0.07 2.33 8.06 -52.49 -0.42 1.91 16 19 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 20 N -0.90 -27.95 13.96 55.43 0.77 -27.18 16 21 Si 0.88 21.84 27.47 -169.99 -4.67 17.17 16 22 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 24 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.54 7.39 -51.93 -0.38 0.15 16 28 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 29 H 0.09 1.22 8.05 -51.93 -0.42 0.80 16 30 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.10 1.53 8.14 -51.93 -0.42 1.11 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.06 0.74 6.80 -51.93 -0.35 0.38 16 34 H 0.06 0.95 7.89 -51.93 -0.41 0.54 16 35 H 0.04 0.94 6.85 -51.93 -0.36 0.59 16 36 H 0.03 0.67 6.95 -51.93 -0.36 0.31 16 37 H 0.26 7.67 8.31 -40.82 -0.34 7.34 16 LS Contribution 304.27 15.07 4.59 4.59 Total: -1.00 -33.35 304.27 -7.73 -41.08 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -6.00 Total: 1.34 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: -1.98 Total: -10.93 kcal Atomic # 7 Polarization: -40.47 SS G_CDS: 0.25 Total: -40.22 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: 0.08 Total: -13.03 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.67 Total: 17.17 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -33.35 -7.73 -41.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717221677.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.166 kcal (2) G-P(sol) polarization free energy of solvation -33.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds