Wall clock time and date at job start Mon Mar 30 2020 03:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08996 * 115.54752 * 2 1 4 4 C 1.53001 * 117.51664 * 214.29874 * 2 1 3 5 5 C 1.53001 * 60.00104 * 252.52099 * 4 2 1 6 6 H 1.08998 * 117.51847 * 252.52661 * 5 4 2 7 7 C 1.53001 * 117.50324 * 107.49028 * 5 4 2 8 8 H 1.09000 * 115.55748 * 323.65000 * 7 5 4 9 9 C 1.52996 * 117.50150 * 177.95858 * 7 5 4 10 10 C 1.52994 * 117.49579 * 109.33287 * 7 5 4 11 11 H 1.09002 * 117.51781 * 214.97292 * 10 7 5 12 12 C 1.50700 * 117.50316 * 0.02562 * 10 7 5 13 13 O 1.21287 * 119.99380 * 316.37071 * 12 10 7 14 14 N 1.34776 * 120.00391 * 136.36939 * 12 10 7 15 15 C 1.46497 * 119.99645 * 0.02562 * 14 12 10 16 16 C 1.46498 * 120.00277 * 180.02562 * 14 12 10 17 17 C 1.50699 * 109.46867 * 89.99882 * 16 14 12 18 18 H 1.08000 * 120.00413 * 0.02562 * 17 16 14 19 19 C 1.37881 * 119.99937 * 180.02562 * 17 16 14 20 20 N 1.31509 * 120.00471 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 119.99714 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47395 * 90.00205 * 21 19 17 23 23 H 1.48503 * 109.46975 * 210.00039 * 21 19 17 24 24 H 1.48498 * 109.47327 * 329.99667 * 21 19 17 25 25 H 1.09002 * 109.46829 * 274.32663 * 1 2 3 26 26 H 1.08993 * 109.47281 * 34.32963 * 1 2 3 27 27 H 1.09000 * 109.46794 * 154.32973 * 1 2 3 28 28 H 1.09004 * 117.49398 * 145.03028 * 4 2 1 29 29 H 1.08997 * 117.49768 * 0.02562 * 4 2 1 30 30 H 1.08994 * 117.49809 * 145.02416 * 9 7 5 31 31 H 1.09001 * 117.51676 * 359.97438 * 9 7 5 32 32 H 1.09006 * 109.46859 * 269.99426 * 15 14 12 33 33 H 1.08993 * 109.47856 * 29.99731 * 15 14 12 34 34 H 1.09005 * 109.47167 * 150.00278 * 15 14 12 35 35 H 1.09002 * 109.46709 * 330.00202 * 16 14 12 36 36 H 1.09002 * 109.47443 * 210.00233 * 16 14 12 37 37 H 0.96994 * 120.00404 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2370 -1.1210 -0.7646 5 6 2.2365 -1.1208 0.7654 6 1 3.1711 -0.8745 1.2692 7 6 1.3589 -2.1560 1.4718 8 1 0.4082 -2.3765 0.9862 9 6 1.3951 -2.1874 3.0010 10 6 2.0647 -3.3036 2.1968 11 1 1.5785 -4.2792 2.1887 12 6 3.5711 -3.3275 2.1611 13 8 4.1567 -3.0964 1.1244 14 7 4.2674 -3.6055 3.2810 15 6 3.5599 -3.8851 4.5329 16 6 5.7318 -3.6282 3.2463 17 6 6.2630 -2.2532 3.5597 18 1 5.5783 -1.4435 3.7646 19 6 7.6232 -2.0288 3.5848 20 7 8.0869 -0.8290 3.8587 21 14 8.8075 -3.4291 3.2297 22 1 9.0934 -3.4784 1.7733 23 1 10.0727 -3.2085 3.9753 24 1 8.1980 -4.7137 3.6582 25 1 -0.3633 0.0775 1.0248 26 1 -0.3633 0.8486 -0.5795 27 1 -0.3633 -0.9263 -0.4452 28 1 3.1722 -0.8750 -1.2677 29 1 1.6120 -1.8585 -1.2682 30 1 0.4683 -2.4285 3.5215 31 1 2.0444 -1.4709 3.5042 32 1 3.4056 -2.9542 5.0787 33 1 2.5949 -4.3405 4.3111 34 1 4.1531 -4.5685 5.1407 35 1 6.0671 -3.9298 2.2540 36 1 6.1019 -4.3380 3.9862 37 1 9.0437 -0.6711 3.8760 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717221677.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:50 Heat of formation + Delta-G solvation = -8.398455 kcal Electronic energy + Delta-G solvation = -17211.990005 eV Core-core repulsion = 14569.141952 eV Total energy + Delta-G solvation = -2642.848053 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.12376 -39.06296 -36.56394 -36.37958 -34.64451 -30.60775 -29.29918 -27.43766 -25.95917 -24.42939 -23.43467 -22.23913 -20.64245 -19.31035 -19.17086 -17.70801 -17.11922 -17.04911 -16.18536 -15.98557 -15.15172 -14.91897 -14.57842 -14.10535 -13.90313 -13.73667 -13.66396 -13.29844 -13.23920 -13.10663 -12.78070 -12.47022 -12.37307 -12.09070 -12.00661 -11.92604 -11.78280 -11.48542 -10.86474 -10.73633 -10.49689 -10.20069 -9.36955 -8.37216 -6.42255 1.29367 1.33830 1.42495 1.81700 2.27719 2.28925 2.61899 2.97083 3.17086 3.49266 3.78625 3.89409 3.93853 4.20345 4.30487 4.35653 4.41531 4.47605 4.50736 4.69658 4.75780 4.87565 4.91477 4.93950 4.96769 4.98862 5.03532 5.08614 5.23131 5.24109 5.39077 5.43190 5.48802 5.64749 6.21766 6.58298 6.74242 7.18947 7.47913 8.80081 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.028045 B = 0.006914 C = 0.006231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.156230 B = 4048.767540 C = 4492.451394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.143 4.143 3 H 0.091 0.909 4 C -0.166 4.166 5 C -0.131 4.131 6 H 0.048 0.952 7 C -0.085 4.085 8 H 0.146 0.854 9 C -0.139 4.139 10 C -0.182 4.182 11 H 0.163 0.837 12 C 0.522 3.478 13 O -0.585 6.585 14 N -0.607 5.607 15 C 0.085 3.915 16 C 0.223 3.777 17 C -0.535 4.535 18 H 0.023 0.977 19 C 0.009 3.991 20 N -0.947 5.947 21 Si 0.950 3.050 22 H -0.277 1.277 23 H -0.273 1.273 24 H -0.237 1.237 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.110 0.890 30 H 0.147 0.853 31 H 0.069 0.931 32 H 0.044 0.956 33 H 0.103 0.897 34 H 0.076 0.924 35 H 0.016 0.984 36 H 0.050 0.950 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.079 -6.065 -2.030 19.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.161 4.161 3 H 0.109 0.891 4 C -0.203 4.203 5 C -0.149 4.149 6 H 0.067 0.933 7 C -0.104 4.104 8 H 0.163 0.837 9 C -0.176 4.176 10 C -0.203 4.203 11 H 0.180 0.820 12 C 0.311 3.689 13 O -0.465 6.465 14 N -0.338 5.338 15 C -0.057 4.057 16 C 0.100 3.900 17 C -0.573 4.573 18 H 0.041 0.959 19 C -0.189 4.189 20 N -0.587 5.587 21 Si 0.773 3.227 22 H -0.203 1.203 23 H -0.198 1.198 24 H -0.160 1.160 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.128 0.872 30 H 0.165 0.835 31 H 0.088 0.912 32 H 0.063 0.937 33 H 0.121 0.879 34 H 0.095 0.905 35 H 0.034 0.966 36 H 0.068 0.932 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.610 -5.860 -2.503 18.728 hybrid contribution 1.664 0.200 -0.076 1.677 sum -15.946 -5.660 -2.579 17.117 Atomic orbital electron populations 1.21334 0.90018 1.02797 1.02653 1.22519 0.97224 0.93275 1.03060 0.89111 1.22951 1.01767 1.01907 0.93690 1.21587 0.98619 1.00157 0.94557 0.93306 1.21841 0.99114 0.95019 0.94387 0.83683 1.23150 1.02738 0.98253 0.93477 1.22281 0.89481 0.98501 1.10008 0.82004 1.20507 0.89965 0.75673 0.82735 1.90634 1.72539 1.50422 1.32905 1.47949 1.06931 1.68367 1.10550 1.21882 0.98039 1.00982 0.84798 1.19340 0.78364 0.95530 0.96730 1.21541 0.92319 0.95597 1.47861 0.95852 1.25890 1.00213 0.98673 0.94080 1.70052 1.14473 1.23530 1.50626 0.85681 0.78284 0.80193 0.78572 1.20317 1.19769 1.15998 0.91267 0.91203 0.91326 0.91384 0.87191 0.83490 0.91209 0.93683 0.87892 0.90517 0.96582 0.93171 0.92257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.02 9.02 71.99 0.65 -1.37 16 2 C -0.14 -3.84 6.41 -10.79 -0.07 -3.91 16 3 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 4 C -0.17 -5.14 9.90 30.59 0.30 -4.83 16 5 C -0.13 -4.44 4.30 -10.79 -0.05 -4.48 16 6 H 0.05 2.24 7.24 -2.39 -0.02 2.22 16 7 C -0.09 -2.21 5.21 -10.80 -0.06 -2.26 16 8 H 0.15 2.69 7.12 -2.39 -0.02 2.67 16 9 C -0.14 -3.26 9.17 30.59 0.28 -2.98 16 10 C -0.18 -5.09 4.53 -11.54 -0.05 -5.14 16 11 H 0.16 3.25 8.14 -2.39 -0.02 3.24 16 12 C 0.52 21.92 6.62 87.66 0.58 22.50 16 13 O -0.58 -30.43 14.87 -3.05 -0.05 -30.47 16 14 N -0.61 -25.59 2.86 -851.13 -2.43 -28.02 16 15 C 0.09 2.54 9.75 127.77 1.25 3.78 16 16 C 0.22 11.28 4.27 85.63 0.37 11.65 16 17 C -0.53 -32.62 9.94 25.60 0.25 -32.37 16 18 H 0.02 1.60 8.06 -2.91 -0.02 1.57 16 19 C 0.01 0.56 5.47 84.66 0.46 1.02 16 20 N -0.95 -61.42 13.96 21.45 0.30 -61.12 16 21 Si 0.95 45.67 27.47 68.60 1.88 47.55 16 22 H -0.28 -13.44 7.11 99.48 0.71 -12.74 16 23 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 24 H -0.24 -10.19 6.54 99.48 0.65 -9.54 16 25 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.07 1.07 7.39 -2.39 -0.02 1.06 16 28 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 29 H 0.11 2.88 8.05 -2.39 -0.02 2.86 16 30 H 0.15 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 33 H 0.10 2.16 6.80 -2.39 -0.02 2.14 16 34 H 0.08 2.08 7.89 -2.38 -0.02 2.07 16 35 H 0.02 0.88 6.85 -2.39 -0.02 0.86 16 36 H 0.05 2.31 6.95 -2.39 -0.02 2.30 16 37 H 0.27 16.14 8.31 -92.71 -0.77 15.37 16 Total: -1.00 -80.13 304.27 4.60 -75.53 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: 0.98 Total: 14.92 kcal Atomic # 6 Polarization: -22.31 SS G_CDS: 3.92 Total: -18.39 kcal Atomic # 7 Polarization: -87.01 SS G_CDS: -2.13 Total: -89.14 kcal Atomic # 8 Polarization: -30.43 SS G_CDS: -0.05 Total: -30.47 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 1.88 Total: 47.55 kcal Total: -80.13 4.60 -75.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717221677.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.136 kcal (2) G-P(sol) polarization free energy of solvation -80.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds