Wall clock time and date at job start Mon Mar 30 2020 04:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47322 * 95.59456 * 3 2 1 5 5 C 1.36928 * 119.99719 * 264.20664 * 4 3 2 6 6 H 1.08005 * 120.00041 * 197.22834 * 5 4 3 7 7 C 1.38808 * 120.00418 * 17.23234 * 5 4 3 8 8 N 1.31624 * 120.00082 * 22.01554 * 7 5 4 9 9 Si 1.86806 * 120.00249 * 202.02051 * 7 5 4 10 10 H 1.48500 * 109.47185 * 89.99703 * 9 7 5 11 11 H 1.48498 * 109.46844 * 209.99844 * 9 7 5 12 12 H 1.48501 * 109.46692 * 329.99349 * 9 7 5 13 13 C 1.46494 * 119.99769 * 84.20905 * 4 3 2 14 14 H 1.08997 * 109.47519 * 0.02562 * 13 4 3 15 15 C 1.53002 * 109.47179 * 120.00145 * 13 4 3 16 16 C 1.52998 * 109.47055 * 179.97438 * 15 13 4 17 17 C 1.52999 * 109.47590 * 300.00012 * 16 15 13 18 18 C 1.52998 * 109.47071 * 59.99584 * 17 16 15 19 19 H 1.09007 * 109.46670 * 60.00649 * 18 17 16 20 20 C 1.52999 * 109.47071 * 180.02562 * 18 17 16 21 21 N 1.46899 * 109.47519 * 295.00476 * 20 18 17 22 22 C 1.52998 * 109.47252 * 300.00622 * 18 17 16 23 23 H 1.09003 * 109.47374 * 335.59043 * 3 2 1 24 24 H 1.09004 * 109.46826 * 215.59661 * 3 2 1 25 25 H 0.97000 * 120.00168 * 180.02562 * 8 7 5 26 26 H 1.08997 * 109.46957 * 59.99579 * 15 13 4 27 27 H 1.09002 * 109.46849 * 299.99419 * 15 13 4 28 28 H 1.09007 * 109.47305 * 60.00069 * 16 15 13 29 29 H 1.09007 * 109.47108 * 179.97438 * 16 15 13 30 30 H 1.08996 * 109.47383 * 180.02562 * 17 16 15 31 31 H 1.09007 * 109.46843 * 300.00340 * 17 16 15 32 32 H 1.09004 * 109.46961 * 55.00794 * 20 18 17 33 33 H 1.09001 * 109.46789 * 174.99977 * 20 18 17 34 34 H 1.00892 * 110.99833 * 180.02562 * 21 20 18 35 35 H 1.00895 * 110.99588 * 303.95561 * 21 20 18 36 36 H 1.08997 * 109.47291 * 299.99567 * 22 18 17 37 37 H 1.09007 * 109.47108 * 179.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0963 0.1355 -1.3746 5 6 3.4379 -0.9795 -2.0923 6 1 4.0476 -0.8853 -2.9787 7 6 3.0005 -2.2309 -1.6806 8 7 1.9441 -2.3356 -0.9024 9 14 3.9111 -3.7663 -2.2308 10 1 4.9759 -4.0895 -1.2474 11 1 2.9582 -4.9018 -2.3197 12 1 4.5230 -3.5282 -3.5628 13 6 3.2192 1.4633 -1.9813 14 1 2.9043 2.2211 -1.2639 15 6 4.6764 1.7104 -2.3769 16 6 4.8046 3.0968 -3.0110 17 6 3.9183 3.1723 -4.2559 18 6 2.4612 2.9251 -3.8604 19 1 2.1458 3.6832 -3.1434 20 6 1.5751 2.9999 -5.1054 21 7 1.6047 4.3653 -5.6464 22 6 2.3330 1.5386 -3.2262 23 1 2.9718 -0.9350 0.4247 24 1 2.9709 0.8365 0.5982 25 1 1.6386 -3.2101 -0.6144 26 1 4.9916 0.9526 -3.0941 27 1 5.3077 1.6564 -1.4900 28 1 4.4891 3.8549 -2.2941 29 1 5.8428 3.2731 -3.2925 30 1 4.0100 4.1598 -4.7080 31 1 4.2338 2.4142 -4.9729 32 1 1.9454 2.3030 -5.8574 33 1 0.5514 2.7367 -4.8391 34 1 1.0263 4.4407 -6.4696 35 1 1.3271 5.0374 -4.9469 36 1 2.6484 0.7806 -3.9431 37 1 1.2949 1.3627 -2.9440 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724020386.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:07 Heat of formation + Delta-G solvation = 27.551167 kcal Electronic energy + Delta-G solvation = -17526.583296 eV Core-core repulsion = 14917.586886 eV Total energy + Delta-G solvation = -2608.996409 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.67515 -36.06923 -34.53278 -33.61046 -31.33087 -30.10037 -28.83390 -26.51669 -24.28794 -23.36063 -21.38173 -20.06800 -19.37979 -17.09594 -16.02988 -15.61198 -15.15473 -14.50359 -14.26449 -14.12247 -13.80719 -13.69478 -13.19745 -12.43957 -12.20532 -11.89538 -11.77089 -11.46564 -11.37896 -11.21493 -10.96617 -10.89190 -10.55689 -10.46940 -10.28872 -10.13003 -10.08793 -9.68452 -9.66932 -9.37244 -8.64489 -8.59445 -7.09975 -5.92314 -3.29088 3.34834 3.42691 3.44254 4.13292 4.40344 4.52223 4.65074 5.02921 5.20941 5.25694 5.31719 5.57067 5.61869 5.71292 5.72841 5.89945 6.00423 6.10082 6.11732 6.16595 6.21149 6.29796 6.41878 6.58213 6.64739 6.71487 6.84057 6.85601 7.04952 7.12657 7.14031 7.20080 7.45015 7.71945 8.20191 9.01913 9.22572 9.68619 10.13195 11.16461 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.022637 B = 0.008093 C = 0.007335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.607858 B = 3459.011042 C = 3816.335663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C 0.250 3.750 3 C 0.257 3.743 4 N -0.580 5.580 5 C -0.254 4.254 6 H 0.081 0.919 7 C 0.002 3.998 8 N -0.903 5.903 9 Si 0.904 3.096 10 H -0.286 1.286 11 H -0.294 1.294 12 H -0.280 1.280 13 C 0.177 3.823 14 H 0.052 0.948 15 C -0.123 4.123 16 C -0.118 4.118 17 C -0.101 4.101 18 C -0.082 4.082 19 H 0.059 0.941 20 C 0.064 3.936 21 N -0.850 5.850 22 C -0.117 4.117 23 H 0.112 0.888 24 H 0.057 0.943 25 H 0.258 0.742 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.024 0.976 34 H 0.335 0.665 35 H 0.337 0.663 36 H 0.067 0.933 37 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.725 10.575 -3.989 12.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.194 5.194 2 C -0.068 4.068 3 C 0.127 3.873 4 N -0.300 5.300 5 C -0.383 4.383 6 H 0.098 0.902 7 C -0.197 4.197 8 N -0.547 5.547 9 Si 0.734 3.266 10 H -0.213 1.213 11 H -0.221 1.221 12 H -0.205 1.205 13 C 0.070 3.930 14 H 0.070 0.930 15 C -0.162 4.162 16 C -0.156 4.156 17 C -0.139 4.139 18 C -0.102 4.102 19 H 0.078 0.922 20 C -0.066 4.066 21 N -0.378 5.378 22 C -0.157 4.157 23 H 0.130 0.870 24 H 0.075 0.925 25 H 0.068 0.932 26 H 0.083 0.917 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.042 0.958 34 H 0.147 0.853 35 H 0.148 0.852 36 H 0.085 0.915 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.777 10.259 -4.038 11.654 hybrid contribution -0.437 -1.151 -0.234 1.253 sum 3.340 9.108 -4.272 10.600 Atomic orbital electron populations 1.80797 1.14571 1.13456 1.10529 1.30627 0.96416 0.88986 0.90814 1.18339 0.80348 1.01601 0.87010 1.44199 1.74102 1.01802 1.09874 1.19179 1.25665 0.83978 1.09477 0.90176 1.24867 0.96389 0.98082 1.00332 1.69923 1.21663 1.23531 1.39582 0.86257 0.79184 0.82849 0.78327 1.21308 1.22061 1.20520 1.20381 0.92912 0.86852 0.92862 0.92993 1.21920 0.98383 0.95527 1.00397 1.21558 0.98798 0.97940 0.97306 1.21432 0.93893 1.01398 0.97128 1.21181 0.95329 0.98328 0.95348 0.92208 1.21885 0.97701 0.89808 0.97235 1.58772 1.62270 1.06038 1.10763 1.21964 1.00324 0.94602 0.98821 0.87039 0.92537 0.93178 0.91702 0.92456 0.92820 0.92864 0.91862 0.92589 0.91153 0.95822 0.85320 0.85166 0.91466 0.92950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -13.23 18.54 42.15 0.78 -12.45 16 2 C 0.25 6.00 13.67 -20.76 -0.28 5.72 16 3 C 0.26 5.47 5.35 -6.83 -0.04 5.43 16 4 N -0.58 -12.70 2.43 -168.98 -0.41 -13.11 16 5 C -0.25 -6.20 8.37 -15.06 -0.13 -6.32 16 6 H 0.08 1.94 6.89 -52.48 -0.36 1.58 16 7 C 0.00 0.04 4.85 -17.43 -0.08 -0.04 16 8 N -0.90 -24.58 9.50 55.49 0.53 -24.06 16 9 Si 0.90 20.68 29.61 -169.99 -5.03 15.65 16 10 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 13 C 0.18 3.25 2.62 -67.93 -0.18 3.07 16 14 H 0.05 0.91 7.87 -51.93 -0.41 0.51 16 15 C -0.12 -2.00 5.17 -26.73 -0.14 -2.13 16 16 C -0.12 -1.60 5.92 -26.73 -0.16 -1.76 16 17 C -0.10 -1.39 5.09 -26.73 -0.14 -1.53 16 18 C -0.08 -1.20 2.33 -90.62 -0.21 -1.41 16 19 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 20 C 0.06 0.87 6.17 -3.82 -0.02 0.84 16 21 N -0.85 -9.49 9.08 -10.37 -0.09 -9.58 16 22 C -0.12 -2.14 4.45 -26.73 -0.12 -2.26 16 23 H 0.11 2.55 6.44 -51.93 -0.33 2.21 16 24 H 0.06 0.98 8.04 -51.93 -0.42 0.57 16 25 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 26 H 0.06 1.15 7.01 -51.93 -0.36 0.79 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.84 7.75 -51.93 -0.40 0.43 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.34 3.16 9.08 -39.30 -0.36 2.80 16 35 H 0.34 3.40 8.99 -39.29 -0.35 3.05 16 36 H 0.07 1.34 7.64 -51.93 -0.40 0.95 16 37 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 297.65 15.07 4.49 4.49 Total: -1.00 -28.38 297.65 -7.15 -35.54 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -5.91 Total: 3.91 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: -1.50 Total: -0.38 kcal Atomic # 7 Polarization: -60.00 SS G_CDS: 0.80 Total: -59.20 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.03 Total: 15.65 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -28.38 -7.15 -35.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724020386.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.088 kcal (2) G-P(sol) polarization free energy of solvation -28.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds