Wall clock time and date at job start Mon Mar 30 2020 04:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47322 * 95.59456 * 3 2 1 5 5 C 1.36928 * 119.99719 * 264.20664 * 4 3 2 6 6 H 1.08005 * 120.00041 * 197.22834 * 5 4 3 7 7 C 1.38808 * 120.00418 * 17.23234 * 5 4 3 8 8 N 1.31624 * 120.00082 * 22.01554 * 7 5 4 9 9 Si 1.86806 * 120.00249 * 202.02051 * 7 5 4 10 10 H 1.48500 * 109.47185 * 89.99703 * 9 7 5 11 11 H 1.48498 * 109.46844 * 209.99844 * 9 7 5 12 12 H 1.48501 * 109.46692 * 329.99349 * 9 7 5 13 13 C 1.46494 * 119.99769 * 84.20905 * 4 3 2 14 14 H 1.08997 * 109.47519 * 0.02562 * 13 4 3 15 15 C 1.53002 * 109.47179 * 120.00145 * 13 4 3 16 16 C 1.52998 * 109.47055 * 179.97438 * 15 13 4 17 17 C 1.52999 * 109.47590 * 300.00012 * 16 15 13 18 18 C 1.52998 * 109.47071 * 59.99584 * 17 16 15 19 19 H 1.09007 * 109.46670 * 60.00649 * 18 17 16 20 20 C 1.52999 * 109.47071 * 180.02562 * 18 17 16 21 21 N 1.46899 * 109.47519 * 295.00476 * 20 18 17 22 22 C 1.52998 * 109.47252 * 300.00622 * 18 17 16 23 23 H 1.09003 * 109.47374 * 335.59043 * 3 2 1 24 24 H 1.09004 * 109.46826 * 215.59661 * 3 2 1 25 25 H 0.97000 * 120.00168 * 180.02562 * 8 7 5 26 26 H 1.08997 * 109.46957 * 59.99579 * 15 13 4 27 27 H 1.09002 * 109.46849 * 299.99419 * 15 13 4 28 28 H 1.09007 * 109.47305 * 60.00069 * 16 15 13 29 29 H 1.09007 * 109.47108 * 179.97438 * 16 15 13 30 30 H 1.08996 * 109.47383 * 180.02562 * 17 16 15 31 31 H 1.09007 * 109.46843 * 300.00340 * 17 16 15 32 32 H 1.09004 * 109.46961 * 55.00794 * 20 18 17 33 33 H 1.09001 * 109.46789 * 174.99977 * 20 18 17 34 34 H 1.00892 * 110.99833 * 180.02562 * 21 20 18 35 35 H 1.00895 * 110.99588 * 303.95561 * 21 20 18 36 36 H 1.08997 * 109.47291 * 299.99567 * 22 18 17 37 37 H 1.09007 * 109.47108 * 179.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0963 0.1355 -1.3746 5 6 3.4379 -0.9795 -2.0923 6 1 4.0476 -0.8853 -2.9787 7 6 3.0005 -2.2309 -1.6806 8 7 1.9441 -2.3356 -0.9024 9 14 3.9111 -3.7663 -2.2308 10 1 4.9759 -4.0895 -1.2474 11 1 2.9582 -4.9018 -2.3197 12 1 4.5230 -3.5282 -3.5628 13 6 3.2192 1.4633 -1.9813 14 1 2.9043 2.2211 -1.2639 15 6 4.6764 1.7104 -2.3769 16 6 4.8046 3.0968 -3.0110 17 6 3.9183 3.1723 -4.2559 18 6 2.4612 2.9251 -3.8604 19 1 2.1458 3.6832 -3.1434 20 6 1.5751 2.9999 -5.1054 21 7 1.6047 4.3653 -5.6464 22 6 2.3330 1.5386 -3.2262 23 1 2.9718 -0.9350 0.4247 24 1 2.9709 0.8365 0.5982 25 1 1.6386 -3.2101 -0.6144 26 1 4.9916 0.9526 -3.0941 27 1 5.3077 1.6564 -1.4900 28 1 4.4891 3.8549 -2.2941 29 1 5.8428 3.2731 -3.2925 30 1 4.0100 4.1598 -4.7080 31 1 4.2338 2.4142 -4.9729 32 1 1.9454 2.3030 -5.8574 33 1 0.5514 2.7367 -4.8391 34 1 1.0263 4.4407 -6.4696 35 1 1.3271 5.0374 -4.9469 36 1 2.6484 0.7806 -3.9431 37 1 1.2949 1.3627 -2.9440 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724020386.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:07 Heat of formation + Delta-G solvation = 9.957280 kcal Electronic energy + Delta-G solvation = -17527.346224 eV Core-core repulsion = 14917.586886 eV Total energy + Delta-G solvation = -2609.759337 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.04581 -37.70288 -36.21618 -35.00938 -33.07916 -31.32040 -30.32009 -28.33537 -25.51023 -25.00523 -22.68278 -21.44472 -20.76864 -18.88490 -17.61943 -17.17119 -16.59238 -15.79309 -15.60975 -15.47900 -15.35790 -15.14120 -14.52485 -14.13046 -13.86196 -13.38929 -13.26516 -13.07094 -12.85065 -12.77238 -12.71197 -12.61214 -12.21958 -11.94247 -11.85202 -11.73229 -11.57236 -11.15970 -11.03637 -10.82554 -10.48397 -9.56831 -8.92914 -7.88519 -5.23967 1.51480 1.54996 1.60875 2.29288 2.52219 2.62615 3.30433 3.52758 3.80721 3.87001 3.96173 4.09157 4.31883 4.35195 4.53750 4.59296 4.76079 4.79245 4.84535 4.89090 4.90433 4.98612 5.06698 5.25809 5.29637 5.42331 5.49457 5.52580 5.57881 5.71177 5.74361 5.80788 6.22601 6.32035 6.64046 7.11200 7.33878 7.84829 8.24624 9.18232 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.022637 B = 0.008093 C = 0.007335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.607858 B = 3459.011042 C = 3816.335663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C 0.262 3.738 3 C 0.255 3.745 4 N -0.590 5.590 5 C -0.240 4.240 6 H 0.080 0.920 7 C -0.047 4.047 8 N -0.932 5.932 9 Si 0.958 3.042 10 H -0.281 1.281 11 H -0.311 1.311 12 H -0.274 1.274 13 C 0.170 3.830 14 H 0.067 0.933 15 C -0.114 4.114 16 C -0.111 4.111 17 C -0.094 4.094 18 C -0.074 4.074 19 H 0.069 0.931 20 C 0.069 3.931 21 N -0.845 5.845 22 C -0.107 4.107 23 H 0.097 0.903 24 H 0.105 0.895 25 H 0.246 0.754 26 H 0.045 0.955 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.045 0.955 32 H 0.062 0.938 33 H 0.011 0.989 34 H 0.347 0.653 35 H 0.346 0.654 36 H 0.042 0.958 37 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.354 12.587 -4.417 14.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.235 5.235 2 C -0.056 4.056 3 C 0.125 3.875 4 N -0.309 5.309 5 C -0.370 4.370 6 H 0.098 0.902 7 C -0.242 4.242 8 N -0.579 5.579 9 Si 0.788 3.212 10 H -0.208 1.208 11 H -0.239 1.239 12 H -0.199 1.199 13 C 0.065 3.935 14 H 0.085 0.915 15 C -0.153 4.153 16 C -0.149 4.149 17 C -0.132 4.132 18 C -0.093 4.093 19 H 0.088 0.912 20 C -0.062 4.062 21 N -0.375 5.375 22 C -0.147 4.147 23 H 0.115 0.885 24 H 0.123 0.877 25 H 0.056 0.944 26 H 0.064 0.936 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.030 0.970 34 H 0.160 0.840 35 H 0.158 0.842 36 H 0.061 0.939 37 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 5.434 12.312 -4.488 14.187 hybrid contribution -0.939 -1.712 -0.147 1.959 sum 4.495 10.600 -4.636 12.411 Atomic orbital electron populations 1.80786 1.15905 1.14928 1.11893 1.31284 0.97006 0.87730 0.89604 1.18611 0.78672 1.02844 0.87360 1.44455 1.73595 1.02577 1.10290 1.19377 1.24039 0.84745 1.08840 0.90208 1.25413 0.97196 1.00243 1.01377 1.70064 1.23262 1.22949 1.41653 0.85400 0.77817 0.79766 0.78220 1.20795 1.23892 1.19910 1.20650 0.94519 0.85424 0.92953 0.91493 1.21800 0.96319 0.96841 1.00342 1.21522 0.99917 0.96290 0.97139 1.21379 0.92854 1.01759 0.97180 1.21085 0.96585 0.95909 0.95759 0.91235 1.21722 0.96712 0.91132 0.96614 1.58708 1.62729 1.04697 1.11389 1.21817 0.97946 0.96414 0.98496 0.88514 0.87732 0.94401 0.93622 0.91806 0.91275 0.91022 0.90417 0.93659 0.91981 0.97032 0.83983 0.84160 0.93926 0.96439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.55 -28.88 18.54 20.00 0.37 -28.51 16 2 C 0.26 12.54 13.67 89.44 1.22 13.76 16 3 C 0.26 10.59 5.35 84.57 0.45 11.04 16 4 N -0.59 -25.31 2.43 -688.53 -1.67 -26.98 16 5 C -0.24 -11.65 8.37 84.03 0.70 -10.94 16 6 H 0.08 3.84 6.89 -2.91 -0.02 3.82 16 7 C -0.05 -2.44 4.85 84.86 0.41 -2.03 16 8 N -0.93 -51.67 9.50 21.65 0.21 -51.46 16 9 Si 0.96 42.94 29.61 68.60 2.03 44.97 16 10 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 11 H -0.31 -14.74 7.11 99.48 0.71 -14.04 16 12 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 13 C 0.17 5.98 2.62 44.99 0.12 6.10 16 14 H 0.07 2.17 7.87 -2.39 -0.02 2.15 16 15 C -0.11 -3.41 5.17 30.59 0.16 -3.25 16 16 C -0.11 -2.59 5.92 30.59 0.18 -2.41 16 17 C -0.09 -2.32 5.09 30.59 0.16 -2.17 16 18 C -0.07 -2.02 2.33 -10.80 -0.03 -2.05 16 19 H 0.07 1.80 8.14 -2.38 -0.02 1.79 16 20 C 0.07 1.78 6.17 86.30 0.53 2.32 16 21 N -0.84 -16.82 9.08 -186.71 -1.70 -18.51 16 22 C -0.11 -3.86 4.45 30.59 0.14 -3.72 16 23 H 0.10 4.38 6.44 -2.39 -0.02 4.37 16 24 H 0.11 3.34 8.04 -2.39 -0.02 3.32 16 25 H 0.25 13.83 8.31 -92.71 -0.77 13.06 16 26 H 0.04 1.54 7.01 -2.39 -0.02 1.52 16 27 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 29 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 30 H 0.08 1.75 7.75 -2.39 -0.02 1.73 16 31 H 0.04 1.22 8.14 -2.38 -0.02 1.20 16 32 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 33 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 34 H 0.35 5.74 9.08 -89.70 -0.81 4.92 16 35 H 0.35 6.00 8.99 -89.70 -0.81 5.19 16 36 H 0.04 1.72 7.64 -2.39 -0.02 1.70 16 37 H 0.02 0.72 8.14 -2.38 -0.02 0.70 16 Total: -1.00 -61.17 297.65 2.73 -58.44 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -0.55 Total: 15.41 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: 4.05 Total: 6.64 kcal Atomic # 7 Polarization: -122.67 SS G_CDS: -2.79 Total: -125.46 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -61.17 2.73 -58.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724020386.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.398 kcal (2) G-P(sol) polarization free energy of solvation -61.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds