Wall clock time and date at job start Mon Mar 30 2020 04:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47164 * 101.11091 * 3 2 1 5 5 C 1.36936 * 119.99632 * 264.22805 * 4 3 2 6 6 H 1.08004 * 120.00266 * 196.86863 * 5 4 3 7 7 C 1.38809 * 120.00516 * 16.86889 * 5 4 3 8 8 N 1.31617 * 119.99875 * 22.14534 * 7 5 4 9 9 Si 1.86802 * 120.00510 * 202.15263 * 7 5 4 10 10 H 1.48502 * 109.47056 * 59.99276 * 9 7 5 11 11 H 1.48494 * 109.47326 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.46760 * 299.99700 * 9 7 5 13 13 C 1.46495 * 120.00313 * 84.22263 * 4 3 2 14 14 C 1.53002 * 109.47373 * 270.00094 * 13 4 3 15 15 H 1.08997 * 109.47009 * 60.00544 * 14 13 4 16 16 O 1.42902 * 109.47247 * 299.99853 * 14 13 4 17 17 C 1.42895 * 113.99919 * 149.99564 * 16 14 13 18 18 C 1.53005 * 109.47141 * 180.02562 * 14 13 4 19 19 C 1.53787 * 113.61010 * 277.49581 * 18 14 13 20 20 C 1.53781 * 87.07810 * 220.01915 * 19 18 14 21 21 C 1.53780 * 87.08355 * 25.43481 * 20 19 18 22 22 H 4.40645 * 5.51402 * 180.02562 * 4 1 2 23 23 H 1.08992 * 109.47468 * 341.10447 * 3 2 1 24 24 H 1.09008 * 109.46742 * 221.10183 * 3 2 1 25 25 H 0.97000 * 120.00562 * 180.02562 * 8 7 5 26 26 H 1.09007 * 109.47132 * 150.00434 * 13 4 3 27 27 H 1.09000 * 109.47395 * 30.00357 * 13 4 3 28 28 H 1.08996 * 109.46998 * 180.02562 * 17 16 14 29 29 H 1.09008 * 109.46709 * 60.00379 * 17 16 14 30 30 H 1.08998 * 109.47283 * 300.00421 * 17 16 14 31 31 H 1.08994 * 112.84930 * 48.80048 * 18 14 13 32 32 H 1.08999 * 113.61863 * 334.56858 * 19 18 14 33 33 H 1.09002 * 113.61200 * 105.47333 * 19 18 14 34 34 H 1.08999 * 113.61365 * 270.88551 * 20 19 18 35 35 H 1.09004 * 113.68506 * 139.99456 * 20 19 18 36 36 H 1.08995 * 113.61482 * 220.01656 * 21 20 19 37 37 H 1.08998 * 113.61198 * 89.10954 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1342 0.2670 -1.3553 5 6 3.4754 -0.7739 -2.1770 6 1 4.0802 -0.5942 -3.0536 7 6 3.0439 -2.0602 -1.8835 8 7 1.9904 -2.2417 -1.1157 9 14 3.9583 -3.5335 -2.5781 10 1 5.3658 -3.5105 -2.1051 11 1 3.3027 -4.7844 -2.1192 12 1 3.9338 -3.4768 -4.0618 13 6 3.2574 1.6469 -1.8315 14 6 1.9472 2.0765 -2.4947 15 1 1.1355 2.0134 -1.7701 16 8 1.6676 1.2145 -3.5997 17 6 0.2740 1.0420 -3.8640 18 6 2.0761 3.5175 -2.9927 19 6 1.8309 4.5711 -1.8996 20 6 1.0718 5.3827 -2.9626 21 6 0.8062 4.0481 -3.6788 22 1 -1.0501 0.0002 0.0001 23 1 3.0098 -0.9714 0.3328 24 1 3.0090 0.7753 0.6757 25 1 1.6890 -3.1405 -0.9102 26 1 4.0692 1.7101 -2.5563 27 1 3.4707 2.3045 -0.9888 28 1 0.1457 0.3744 -4.7161 29 1 -0.1756 2.0092 -4.0889 30 1 -0.2112 0.6104 -2.9886 31 1 2.9864 3.6867 -3.5678 32 1 1.1978 4.2172 -1.0860 33 1 2.7418 5.0560 -1.5484 34 1 1.7076 6.0632 -3.5289 35 1 0.1689 5.8627 -2.5848 36 1 0.8898 4.1106 -4.7638 37 1 -0.1069 3.5511 -3.3515 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852009662.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:39 Heat of formation + Delta-G solvation = 59.670333 kcal Electronic energy + Delta-G solvation = -17818.238408 eV Core-core repulsion = 15178.342039 eV Total energy + Delta-G solvation = -2639.896369 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.18829 -36.46092 -35.42325 -31.49167 -31.46180 -29.05619 -26.01702 -25.81655 -25.30657 -24.87482 -21.95094 -20.24214 -19.21439 -17.38706 -16.40128 -15.91744 -15.30925 -15.06090 -14.70057 -14.08531 -13.50916 -13.22345 -13.17852 -12.81445 -12.34177 -11.90192 -11.73258 -11.43627 -11.35838 -11.07219 -10.92138 -10.63772 -10.52617 -10.31323 -10.18153 -10.09977 -9.91035 -9.61079 -8.95998 -8.68508 -8.48963 -8.25160 -6.85487 -5.63636 -3.01175 3.47667 3.52947 3.54281 4.21853 4.42126 4.55456 4.65290 4.85577 4.95215 4.97004 5.21623 5.52278 5.60819 5.75098 5.77781 5.85083 5.86746 5.97368 6.02503 6.11765 6.12495 6.18608 6.31357 6.33816 6.41874 6.49619 6.56539 6.67942 6.75874 6.93363 7.29790 7.46732 7.93349 8.17580 8.43663 9.19747 9.28726 9.91420 10.36890 11.41356 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.029409 B = 0.008162 C = 0.007700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.848157 B = 3429.855860 C = 3635.672746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.311 4.311 2 C -0.086 4.086 3 C 0.264 3.736 4 N -0.580 5.580 5 C -0.235 4.235 6 H 0.075 0.925 7 C -0.002 4.002 8 N -0.896 5.896 9 Si 0.897 3.103 10 H -0.286 1.286 11 H -0.294 1.294 12 H -0.286 1.286 13 C 0.150 3.850 14 C 0.079 3.921 15 H 0.054 0.946 16 O -0.352 6.352 17 C 0.035 3.965 18 C -0.132 4.132 19 C -0.133 4.133 20 C -0.143 4.143 21 C -0.137 4.137 22 H 0.187 0.813 23 H 0.098 0.902 24 H 0.035 0.965 25 H 0.251 0.749 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.069 0.931 29 H 0.029 0.971 30 H 0.038 0.962 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.757 11.549 -1.052 11.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.331 4.331 2 C -0.089 4.089 3 C 0.139 3.861 4 N -0.298 5.298 5 C -0.365 4.365 6 H 0.093 0.907 7 C -0.200 4.200 8 N -0.541 5.541 9 Si 0.727 3.273 10 H -0.213 1.213 11 H -0.220 1.220 12 H -0.212 1.212 13 C 0.022 3.978 14 C 0.018 3.982 15 H 0.072 0.928 16 O -0.269 6.269 17 C -0.062 4.062 18 C -0.151 4.151 19 C -0.170 4.170 20 C -0.180 4.180 21 C -0.175 4.175 22 H 0.204 0.796 23 H 0.116 0.884 24 H 0.052 0.948 25 H 0.061 0.939 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.087 0.913 29 H 0.048 0.952 30 H 0.057 0.943 31 H 0.107 0.893 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.614 11.269 -1.121 11.439 hybrid contribution -0.480 -0.871 -0.468 1.099 sum -2.094 10.398 -1.589 10.725 Atomic orbital electron populations 1.24106 0.95261 1.08197 1.05519 1.24388 0.95311 0.93720 0.95457 1.17889 0.82811 0.99839 0.85580 1.44188 1.74199 1.00745 1.10699 1.19134 1.24866 0.85539 1.06928 0.90748 1.24821 0.96736 0.97892 1.00546 1.70104 1.21968 1.20339 1.41642 0.86436 0.79629 0.82626 0.78568 1.21315 1.22011 1.21221 1.21075 0.94112 0.86628 0.95937 1.23003 1.00723 0.86307 0.88166 0.92841 1.87981 1.21901 1.67370 1.49696 1.22729 0.84314 0.98696 1.00476 1.23153 0.98332 0.96056 0.97577 1.22879 1.00258 0.97153 0.96749 1.22836 1.00157 0.96573 0.98480 1.22964 0.98646 0.96335 0.99517 0.79598 0.88435 0.94758 0.93897 0.92794 0.93060 0.91267 0.95248 0.94348 0.89279 0.90271 0.91664 0.90595 0.92036 0.91899 0.90252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -7.11 19.25 29.55 0.57 -6.54 16 2 C -0.09 -2.07 10.54 -37.12 -0.39 -2.47 16 3 C 0.26 6.27 5.45 -6.83 -0.04 6.23 16 4 N -0.58 -14.17 2.45 -176.57 -0.43 -14.60 16 5 C -0.24 -6.40 9.01 -15.06 -0.14 -6.54 16 6 H 0.07 2.05 7.90 -52.48 -0.41 1.63 16 7 C 0.00 -0.07 4.85 -17.43 -0.08 -0.15 16 8 N -0.90 -25.70 9.50 55.49 0.53 -25.17 16 9 Si 0.90 22.10 29.61 -169.99 -5.03 17.07 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 11 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 13 C 0.15 3.07 5.44 -4.04 -0.02 3.05 16 14 C 0.08 1.53 2.16 -26.73 -0.06 1.47 16 15 H 0.05 1.12 6.65 -51.93 -0.35 0.78 16 16 O -0.35 -7.75 9.57 -35.23 -0.34 -8.08 16 17 C 0.03 0.67 10.57 101.05 1.07 1.74 16 18 C -0.13 -2.02 3.36 -89.80 -0.30 -2.32 16 19 C -0.13 -1.74 7.63 -25.92 -0.20 -1.94 16 20 C -0.14 -1.68 8.08 -25.92 -0.21 -1.89 16 21 C -0.14 -1.89 6.18 -25.92 -0.16 -2.05 16 22 H 0.19 3.62 7.80 -54.09 -0.42 3.19 16 23 H 0.10 2.53 6.42 -51.93 -0.33 2.20 16 24 H 0.03 0.71 7.98 -51.92 -0.41 0.29 16 25 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 26 H 0.05 1.11 8.03 -51.93 -0.42 0.69 16 27 H 0.05 0.93 7.95 -51.93 -0.41 0.52 16 28 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 29 H 0.03 0.48 4.95 -51.92 -0.26 0.22 16 30 H 0.04 0.81 8.08 -51.93 -0.42 0.39 16 31 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 32 H 0.08 1.08 7.96 -51.93 -0.41 0.67 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.08 1.14 6.33 -51.93 -0.33 0.81 16 LS Contribution 302.17 15.07 4.55 4.55 Total: -1.00 -29.92 302.17 -6.53 -36.45 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -5.85 Total: 1.19 kcal Atomic # 6 Polarization: -11.44 SS G_CDS: 0.04 Total: -11.40 kcal Atomic # 7 Polarization: -39.87 SS G_CDS: 0.09 Total: -39.77 kcal Atomic # 8 Polarization: -7.75 SS G_CDS: -0.34 Total: -8.08 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.03 Total: 17.07 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.92 -6.53 -36.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852009662.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.122 kcal (2) G-P(sol) polarization free energy of solvation -29.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds