Wall clock time and date at job start Mon Mar 30 2020 04:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47164 * 101.11091 * 3 2 1 5 5 C 1.36936 * 119.99632 * 264.22805 * 4 3 2 6 6 H 1.08004 * 120.00266 * 196.86863 * 5 4 3 7 7 C 1.38809 * 120.00516 * 16.86889 * 5 4 3 8 8 N 1.31617 * 119.99875 * 22.14534 * 7 5 4 9 9 Si 1.86802 * 120.00510 * 202.15263 * 7 5 4 10 10 H 1.48502 * 109.47056 * 59.99276 * 9 7 5 11 11 H 1.48494 * 109.47326 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.46760 * 299.99700 * 9 7 5 13 13 C 1.46495 * 120.00313 * 84.22263 * 4 3 2 14 14 C 1.53002 * 109.47373 * 270.00094 * 13 4 3 15 15 H 1.08997 * 109.47009 * 60.00544 * 14 13 4 16 16 O 1.42902 * 109.47247 * 299.99853 * 14 13 4 17 17 C 1.42895 * 113.99919 * 149.99564 * 16 14 13 18 18 C 1.53005 * 109.47141 * 180.02562 * 14 13 4 19 19 C 1.53787 * 113.61010 * 277.49581 * 18 14 13 20 20 C 1.53781 * 87.07810 * 220.01915 * 19 18 14 21 21 C 1.53780 * 87.08355 * 25.43481 * 20 19 18 22 22 H 4.40645 * 5.51402 * 180.02562 * 4 1 2 23 23 H 1.08992 * 109.47468 * 341.10447 * 3 2 1 24 24 H 1.09008 * 109.46742 * 221.10183 * 3 2 1 25 25 H 0.97000 * 120.00562 * 180.02562 * 8 7 5 26 26 H 1.09007 * 109.47132 * 150.00434 * 13 4 3 27 27 H 1.09000 * 109.47395 * 30.00357 * 13 4 3 28 28 H 1.08996 * 109.46998 * 180.02562 * 17 16 14 29 29 H 1.09008 * 109.46709 * 60.00379 * 17 16 14 30 30 H 1.08998 * 109.47283 * 300.00421 * 17 16 14 31 31 H 1.08994 * 112.84930 * 48.80048 * 18 14 13 32 32 H 1.08999 * 113.61863 * 334.56858 * 19 18 14 33 33 H 1.09002 * 113.61200 * 105.47333 * 19 18 14 34 34 H 1.08999 * 113.61365 * 270.88551 * 20 19 18 35 35 H 1.09004 * 113.68506 * 139.99456 * 20 19 18 36 36 H 1.08995 * 113.61482 * 220.01656 * 21 20 19 37 37 H 1.08998 * 113.61198 * 89.10954 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1342 0.2670 -1.3553 5 6 3.4754 -0.7739 -2.1770 6 1 4.0802 -0.5942 -3.0536 7 6 3.0439 -2.0602 -1.8835 8 7 1.9904 -2.2417 -1.1157 9 14 3.9583 -3.5335 -2.5781 10 1 5.3658 -3.5105 -2.1051 11 1 3.3027 -4.7844 -2.1192 12 1 3.9338 -3.4768 -4.0618 13 6 3.2574 1.6469 -1.8315 14 6 1.9472 2.0765 -2.4947 15 1 1.1355 2.0134 -1.7701 16 8 1.6676 1.2145 -3.5997 17 6 0.2740 1.0420 -3.8640 18 6 2.0761 3.5175 -2.9927 19 6 1.8309 4.5711 -1.8996 20 6 1.0718 5.3827 -2.9626 21 6 0.8062 4.0481 -3.6788 22 1 -1.0501 0.0002 0.0001 23 1 3.0098 -0.9714 0.3328 24 1 3.0090 0.7753 0.6757 25 1 1.6890 -3.1405 -0.9102 26 1 4.0692 1.7101 -2.5563 27 1 3.4707 2.3045 -0.9888 28 1 0.1457 0.3744 -4.7161 29 1 -0.1756 2.0092 -4.0889 30 1 -0.2112 0.6104 -2.9886 31 1 2.9864 3.6867 -3.5678 32 1 1.1978 4.2172 -1.0860 33 1 2.7418 5.0560 -1.5484 34 1 1.7076 6.0632 -3.5289 35 1 0.1689 5.8627 -2.5848 36 1 0.8898 4.1106 -4.7638 37 1 -0.1069 3.5511 -3.3515 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852009662.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:38 Heat of formation + Delta-G solvation = 43.143080 kcal Electronic energy + Delta-G solvation = -17818.955083 eV Core-core repulsion = 15178.342039 eV Total energy + Delta-G solvation = -2640.613044 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.47422 -38.00651 -37.16138 -33.47722 -33.24187 -30.71790 -27.91386 -27.26868 -26.64376 -26.26149 -23.60062 -21.85952 -20.33193 -19.29107 -18.22690 -17.39807 -16.96542 -16.60361 -16.04930 -15.78090 -15.41443 -15.03154 -14.59728 -14.45340 -13.54769 -13.39370 -13.21713 -13.08774 -12.85876 -12.73888 -12.53261 -12.38672 -12.19849 -12.02476 -11.93519 -11.46152 -11.17073 -11.08641 -10.75082 -10.62582 -10.29442 -9.93676 -8.81085 -7.73328 -5.10598 1.49827 1.51116 1.57148 2.36984 2.56200 2.65621 3.10541 3.39524 3.70253 3.81737 3.88647 4.01466 4.07658 4.13204 4.33373 4.51824 4.57888 4.72960 4.75371 4.81492 4.88901 4.89526 4.93559 4.94815 4.99501 5.11052 5.16008 5.29889 5.35938 5.42013 5.64426 5.67668 5.77595 6.37077 6.65194 7.20932 7.38828 7.92883 8.34002 9.28906 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.029409 B = 0.008162 C = 0.007700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.848157 B = 3429.855860 C = 3635.672746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.305 4.305 2 C -0.117 4.117 3 C 0.266 3.734 4 N -0.592 5.592 5 C -0.235 4.235 6 H 0.066 0.934 7 C -0.050 4.050 8 N -0.916 5.916 9 Si 0.952 3.048 10 H -0.280 1.280 11 H -0.300 1.300 12 H -0.288 1.288 13 C 0.145 3.855 14 C 0.086 3.914 15 H 0.035 0.965 16 O -0.385 6.385 17 C 0.039 3.961 18 C -0.135 4.135 19 C -0.129 4.129 20 C -0.128 4.128 21 C -0.139 4.139 22 H 0.215 0.785 23 H 0.069 0.931 24 H 0.065 0.935 25 H 0.241 0.759 26 H 0.050 0.950 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.012 0.988 31 H 0.092 0.908 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.818 13.403 -1.393 13.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.324 4.324 2 C -0.120 4.120 3 C 0.140 3.860 4 N -0.311 5.311 5 C -0.365 4.365 6 H 0.083 0.917 7 C -0.245 4.245 8 N -0.563 5.563 9 Si 0.783 3.217 10 H -0.206 1.206 11 H -0.227 1.227 12 H -0.214 1.214 13 C 0.019 3.981 14 C 0.026 3.974 15 H 0.053 0.947 16 O -0.303 6.303 17 C -0.057 4.057 18 C -0.154 4.154 19 C -0.167 4.167 20 C -0.165 4.165 21 C -0.177 4.177 22 H 0.232 0.768 23 H 0.087 0.913 24 H 0.083 0.917 25 H 0.051 0.949 26 H 0.069 0.931 27 H 0.095 0.905 28 H 0.091 0.909 29 H 0.079 0.921 30 H 0.031 0.969 31 H 0.110 0.890 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.111 0.889 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.663 13.157 -1.463 13.342 hybrid contribution -0.458 -1.397 -0.365 1.515 sum -2.122 11.760 -1.828 12.089 Atomic orbital electron populations 1.24831 0.96203 1.07013 1.04367 1.24662 0.95990 0.94807 0.96557 1.17827 0.82917 0.99411 0.85811 1.44297 1.74375 1.01694 1.10773 1.19247 1.24073 0.86621 1.06596 0.91665 1.25389 0.97578 0.99833 1.01661 1.70266 1.23085 1.19774 1.43130 0.85562 0.78750 0.79795 0.77632 1.20603 1.22672 1.21424 1.21262 0.94750 0.85179 0.96916 1.22876 0.98907 0.88302 0.87292 0.94723 1.87915 1.23312 1.68580 1.50539 1.22741 0.83233 1.00357 0.99386 1.23115 0.99435 0.93689 0.99161 1.22870 1.01075 0.96424 0.96302 1.22785 1.00731 0.95663 0.97314 1.22958 0.97264 0.97553 0.99911 0.76850 0.91253 0.91698 0.94929 0.93142 0.90520 0.90912 0.92105 0.96926 0.88993 0.91019 0.90135 0.88926 0.90681 0.91431 0.91073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -13.76 19.25 74.32 1.43 -12.33 16 2 C -0.12 -5.67 10.54 31.13 0.33 -5.35 16 3 C 0.27 12.63 5.45 84.58 0.46 13.10 16 4 N -0.59 -28.96 2.45 -712.55 -1.75 -30.71 16 5 C -0.24 -12.91 9.01 84.03 0.76 -12.15 16 6 H 0.07 3.63 7.90 -2.91 -0.02 3.61 16 7 C -0.05 -2.78 4.85 84.86 0.41 -2.37 16 8 N -0.92 -53.47 9.50 21.65 0.21 -53.26 16 9 Si 0.95 46.12 29.61 68.60 2.03 48.15 16 10 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 11 H -0.30 -14.72 7.11 99.48 0.71 -14.01 16 12 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 13 C 0.14 5.82 5.44 86.38 0.47 6.29 16 14 C 0.09 3.27 2.16 30.60 0.07 3.34 16 15 H 0.03 1.44 6.65 -2.39 -0.02 1.42 16 16 O -0.38 -16.88 9.57 -148.98 -1.43 -18.30 16 17 C 0.04 1.51 10.57 113.37 1.20 2.70 16 18 C -0.13 -3.86 3.36 -10.26 -0.03 -3.89 16 19 C -0.13 -3.00 7.63 31.12 0.24 -2.77 16 20 C -0.13 -2.53 8.08 31.12 0.25 -2.28 16 21 C -0.14 -3.48 6.18 31.12 0.19 -3.29 16 22 H 0.21 8.00 7.80 -4.41 -0.03 7.96 16 23 H 0.07 3.68 6.42 -2.39 -0.02 3.66 16 24 H 0.07 2.62 7.98 -2.38 -0.02 2.60 16 25 H 0.24 14.07 8.31 -92.71 -0.77 13.30 16 26 H 0.05 2.04 8.03 -2.38 -0.02 2.02 16 27 H 0.08 2.65 7.95 -2.39 -0.02 2.63 16 28 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 29 H 0.06 1.90 4.95 -2.38 -0.01 1.89 16 30 H 0.01 0.52 8.08 -2.39 -0.02 0.50 16 31 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 32 H 0.07 1.79 7.96 -2.39 -0.02 1.77 16 33 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 36 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.07 1.89 6.33 -2.39 -0.02 1.87 16 Total: -1.00 -64.04 302.17 5.86 -58.18 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: 1.02 Total: 14.93 kcal Atomic # 6 Polarization: -24.76 SS G_CDS: 5.77 Total: -18.99 kcal Atomic # 7 Polarization: -82.43 SS G_CDS: -1.54 Total: -83.97 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: -1.43 Total: -18.30 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Total: -64.04 5.86 -58.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852009662.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.323 kcal (2) G-P(sol) polarization free energy of solvation -64.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds