Wall clock time and date at job start Mon Mar 30 2020 03:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.39751 * 2 1 4 4 C 1.53014 * 109.40135 * 240.26040 * 2 1 3 5 5 C 1.53377 * 109.13517 * 177.01675 * 4 2 1 6 6 C 1.51421 * 108.12100 * 52.45884 * 5 4 2 7 7 O 1.20767 * 121.00225 * 130.90321 * 6 5 4 8 8 C 1.51314 * 117.99045 * 310.91074 * 6 5 4 9 9 N 1.46799 * 109.39782 * 119.82356 * 2 1 3 10 10 C 1.46899 * 111.00455 * 309.58212 * 9 2 1 11 11 C 1.52999 * 109.47333 * 173.31520 * 10 9 2 12 12 C 1.50699 * 115.55103 * 305.46305 * 11 10 9 13 13 H 1.07997 * 120.00344 * 99.04820 * 12 11 10 14 14 C 1.37877 * 119.99872 * 279.05541 * 12 11 10 15 15 N 1.31514 * 120.00112 * 5.60621 * 14 12 11 16 16 Si 1.86798 * 119.99989 * 185.61052 * 14 12 11 17 17 H 1.48506 * 109.47013 * 269.99590 * 16 14 12 18 18 H 1.48493 * 109.47192 * 29.99527 * 16 14 12 19 19 H 1.48500 * 109.47367 * 149.99835 * 16 14 12 20 20 C 1.52996 * 117.51616 * 91.15966 * 11 10 9 21 21 C 1.52996 * 117.49737 * 159.78861 * 11 10 9 22 22 H 1.09005 * 109.47319 * 307.31783 * 1 2 3 23 23 H 1.08996 * 109.47195 * 67.31502 * 1 2 3 24 24 H 1.08997 * 109.47457 * 187.31491 * 1 2 3 25 25 H 1.09006 * 109.52529 * 296.91087 * 4 2 1 26 26 H 1.09001 * 109.52693 * 57.11535 * 4 2 1 27 27 H 1.09001 * 109.73398 * 172.11654 * 5 4 2 28 28 H 1.08998 * 109.73106 * 292.76044 * 5 4 2 29 29 H 1.09008 * 109.62269 * 290.55132 * 8 6 5 30 30 H 1.09001 * 109.62974 * 169.98802 * 8 6 5 31 31 H 1.09006 * 109.46489 * 53.31415 * 10 9 2 32 32 H 1.09000 * 109.47124 * 293.31804 * 10 9 2 33 33 H 0.96996 * 119.99803 * 354.98003 * 15 14 12 34 34 H 1.08996 * 117.50045 * 214.96994 * 20 11 10 35 35 H 1.09003 * 117.49840 * 359.97438 * 20 11 10 36 36 H 1.08993 * 117.50161 * 359.97438 * 21 11 10 37 37 H 1.08999 * 117.49628 * 144.99935 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8920 1.0282 0.0000 4 6 2.0383 -0.7159 -1.2532 5 6 3.5702 -0.6472 -1.2849 6 6 4.0921 -1.1579 0.0416 7 8 4.9689 -1.9871 0.0874 8 6 3.4818 -0.5980 1.3079 9 7 2.0175 -0.6886 1.2013 10 6 1.3682 -0.1630 2.4096 11 6 1.7735 -1.0114 3.6166 12 6 1.5221 -2.4914 3.4846 13 1 2.3298 -3.1541 3.2110 14 6 0.2609 -2.9995 3.7129 15 7 -0.7459 -2.1837 3.9374 16 14 -0.0177 -4.8466 3.7037 17 1 -0.3594 -5.2888 2.3278 18 1 1.2186 -5.5359 4.1525 19 1 -1.1340 -5.1834 4.6234 20 6 3.0078 -0.5723 4.4068 21 6 1.6115 -0.3883 5.0044 22 1 -0.3634 0.6230 0.8173 23 1 -0.3633 0.3963 -0.9481 24 1 -0.3634 -1.0192 0.1308 25 1 1.7207 -1.7585 -1.2312 26 1 1.6332 -0.2292 -2.1404 27 1 3.9498 -1.2707 -2.0944 28 1 3.8892 0.3842 -1.4342 29 1 3.7764 0.4448 1.4262 30 1 3.8229 -1.1772 2.1659 31 1 0.2858 -0.2007 2.2859 32 1 1.6799 0.8691 2.5698 33 1 -0.5892 -1.2297 4.0146 34 1 3.6380 -1.3538 4.8312 35 1 3.5316 0.3211 4.0666 36 1 1.2165 0.6262 5.0577 37 1 1.3230 -1.0489 5.8221 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885930414.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:17 Heat of formation + Delta-G solvation = -14.558239 kcal Electronic energy + Delta-G solvation = -17934.991676 eV Core-core repulsion = 15291.876514 eV Total energy + Delta-G solvation = -2643.115161 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.77192 -37.81979 -36.24507 -32.48105 -31.76822 -30.90264 -27.02721 -25.27496 -24.74801 -23.04300 -21.43627 -20.44493 -19.22786 -18.82531 -16.58781 -15.84327 -15.39764 -14.81860 -14.56995 -14.31845 -14.00799 -13.66022 -13.05948 -12.89396 -12.65360 -12.45007 -12.18015 -12.00279 -11.42430 -11.34989 -11.07810 -10.77691 -10.71427 -10.68348 -10.48481 -10.27623 -10.04449 -9.53620 -9.11730 -8.44256 -8.39353 -8.19970 -7.62740 -6.21862 -3.91257 2.20126 3.51311 3.53916 3.69528 4.27669 4.40871 4.61560 4.89337 4.99554 5.13592 5.16201 5.43953 5.46885 5.55264 5.59517 5.67904 5.84021 5.89502 5.94396 6.06857 6.12259 6.16279 6.27072 6.30592 6.32439 6.44741 6.54971 6.65413 6.73540 6.87785 7.24585 7.25856 7.57591 7.76499 7.81747 8.38632 8.57256 9.01123 9.79133 11.17821 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.021165 B = 0.009371 C = 0.009082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.622748 B = 2987.339895 C = 3082.155250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.073 3.927 3 H 0.033 0.967 4 C -0.104 4.104 5 C -0.171 4.171 6 C 0.372 3.628 7 O -0.460 6.460 8 C 0.012 3.988 9 N -0.495 5.495 10 C 0.095 3.905 11 C 0.030 3.970 12 C -0.541 4.541 13 H 0.050 0.950 14 C 0.028 3.972 15 N -0.914 5.914 16 Si 1.066 2.934 17 H -0.289 1.289 18 H -0.291 1.291 19 H -0.288 1.288 20 C -0.203 4.203 21 C -0.182 4.182 22 H 0.057 0.943 23 H 0.053 0.947 24 H 0.073 0.927 25 H 0.079 0.921 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.051 0.949 30 H 0.113 0.887 31 H 0.085 0.915 32 H 0.002 0.998 33 H 0.271 0.729 34 H 0.080 0.920 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.834 6.630 -8.205 11.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.035 4.035 3 H 0.051 0.949 4 C -0.142 4.142 5 C -0.209 4.209 6 C 0.247 3.753 7 O -0.332 6.332 8 C -0.116 4.116 9 N -0.221 5.221 10 C -0.032 4.032 11 C 0.029 3.971 12 C -0.579 4.579 13 H 0.069 0.931 14 C -0.177 4.177 15 N -0.550 5.550 16 Si 0.895 3.105 17 H -0.216 1.216 18 H -0.217 1.217 19 H -0.214 1.214 20 C -0.240 4.240 21 C -0.220 4.220 22 H 0.076 0.924 23 H 0.072 0.928 24 H 0.092 0.908 25 H 0.098 0.902 26 H 0.092 0.908 27 H 0.104 0.896 28 H 0.109 0.891 29 H 0.069 0.931 30 H 0.131 0.869 31 H 0.103 0.897 32 H 0.020 0.980 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.002 4.512 -8.108 9.753 hybrid contribution 1.403 2.230 0.015 2.635 sum 4.405 6.742 -8.093 11.417 Atomic orbital electron populations 1.21879 0.93848 1.03664 1.00856 1.21678 0.96126 0.94749 0.90961 0.94915 1.21610 0.92512 1.02758 0.97334 1.22389 0.98223 1.02982 0.97292 1.24914 0.79172 0.78567 0.92679 1.90371 1.26654 1.26252 1.89903 1.22865 0.90445 1.00187 0.98144 1.61896 1.01994 1.56034 1.02148 1.21890 0.99460 0.92526 0.89297 1.19135 0.95237 0.95758 0.86935 1.21093 0.97835 0.88856 1.50136 0.93137 1.25594 0.92158 1.06117 0.93795 1.70719 1.32312 1.05616 1.46311 0.83587 0.75304 0.74901 0.76690 1.21597 1.21692 1.21354 1.22934 0.91460 1.01124 1.08521 1.22795 0.99145 0.99593 1.00454 0.92424 0.92808 0.90811 0.90221 0.90785 0.89606 0.89089 0.93097 0.86916 0.89707 0.97991 0.91788 0.90175 0.91911 0.91805 0.89798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 8.35 37.16 0.31 -1.90 16 2 C 0.07 1.12 2.39 -67.76 -0.16 0.96 16 3 H 0.03 0.46 8.13 -51.93 -0.42 0.04 16 4 C -0.10 -1.38 5.40 -26.53 -0.14 -1.52 16 5 C -0.17 -2.21 6.24 -27.33 -0.17 -2.38 16 6 C 0.37 6.36 6.87 -28.38 -0.20 6.17 16 7 O -0.46 -9.26 17.90 5.99 0.11 -9.16 16 8 C 0.01 0.21 5.17 -4.57 -0.02 0.19 16 9 N -0.49 -9.49 4.23 -227.61 -0.96 -10.45 16 10 C 0.10 2.00 4.36 -3.82 -0.02 1.98 16 11 C 0.03 0.71 0.35 -155.66 -0.05 0.66 16 12 C -0.54 -14.67 8.50 -34.44 -0.29 -14.96 16 13 H 0.05 1.44 7.82 -52.49 -0.41 1.03 16 14 C 0.03 0.76 5.42 -17.82 -0.10 0.67 16 15 N -0.91 -26.24 13.61 55.43 0.75 -25.49 16 16 Si 1.07 25.43 29.91 -169.99 -5.08 20.34 16 17 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 C -0.20 -4.31 8.26 -26.73 -0.22 -4.53 16 21 C -0.18 -4.08 8.98 -26.73 -0.24 -4.32 16 22 H 0.06 0.91 6.62 -51.93 -0.34 0.57 16 23 H 0.05 0.65 8.13 -51.93 -0.42 0.23 16 24 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 25 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 26 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.05 0.81 8.14 -51.92 -0.42 0.39 16 30 H 0.11 2.34 6.13 -51.93 -0.32 2.02 16 31 H 0.08 1.91 5.29 -51.93 -0.27 1.63 16 32 H 0.00 0.04 8.09 -51.93 -0.42 -0.38 16 33 H 0.27 7.65 5.99 -40.82 -0.24 7.41 16 34 H 0.08 1.74 8.14 -51.93 -0.42 1.31 16 35 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 37 H 0.08 2.02 8.14 -51.93 -0.42 1.60 16 LS Contribution 294.87 15.07 4.44 4.44 Total: -1.00 -29.85 294.87 -7.93 -37.77 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -5.88 Total: 1.52 kcal Atomic # 6 Polarization: -17.68 SS G_CDS: -1.30 Total: -18.98 kcal Atomic # 7 Polarization: -35.73 SS G_CDS: -0.21 Total: -35.94 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: 0.11 Total: -9.16 kcal Atomic # 14 Polarization: 25.43 SS G_CDS: -5.08 Total: 20.34 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -29.85 -7.93 -37.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885930414.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.215 kcal (2) G-P(sol) polarization free energy of solvation -29.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds