Wall clock time and date at job start Mon Mar 30 2020 03:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.39751 * 2 1 4 4 C 1.53014 * 109.40135 * 240.26040 * 2 1 3 5 5 C 1.53377 * 109.13517 * 177.01675 * 4 2 1 6 6 C 1.51421 * 108.12100 * 52.45884 * 5 4 2 7 7 O 1.20767 * 121.00225 * 130.90321 * 6 5 4 8 8 C 1.51314 * 117.99045 * 310.91074 * 6 5 4 9 9 N 1.46799 * 109.39782 * 119.82356 * 2 1 3 10 10 C 1.46899 * 111.00455 * 309.58212 * 9 2 1 11 11 C 1.52999 * 109.47333 * 173.31520 * 10 9 2 12 12 C 1.50699 * 115.55103 * 305.46305 * 11 10 9 13 13 H 1.07997 * 120.00344 * 99.04820 * 12 11 10 14 14 C 1.37877 * 119.99872 * 279.05541 * 12 11 10 15 15 N 1.31514 * 120.00112 * 5.60621 * 14 12 11 16 16 Si 1.86798 * 119.99989 * 185.61052 * 14 12 11 17 17 H 1.48506 * 109.47013 * 269.99590 * 16 14 12 18 18 H 1.48493 * 109.47192 * 29.99527 * 16 14 12 19 19 H 1.48500 * 109.47367 * 149.99835 * 16 14 12 20 20 C 1.52996 * 117.51616 * 91.15966 * 11 10 9 21 21 C 1.52996 * 117.49737 * 159.78861 * 11 10 9 22 22 H 1.09005 * 109.47319 * 307.31783 * 1 2 3 23 23 H 1.08996 * 109.47195 * 67.31502 * 1 2 3 24 24 H 1.08997 * 109.47457 * 187.31491 * 1 2 3 25 25 H 1.09006 * 109.52529 * 296.91087 * 4 2 1 26 26 H 1.09001 * 109.52693 * 57.11535 * 4 2 1 27 27 H 1.09001 * 109.73398 * 172.11654 * 5 4 2 28 28 H 1.08998 * 109.73106 * 292.76044 * 5 4 2 29 29 H 1.09008 * 109.62269 * 290.55132 * 8 6 5 30 30 H 1.09001 * 109.62974 * 169.98802 * 8 6 5 31 31 H 1.09006 * 109.46489 * 53.31415 * 10 9 2 32 32 H 1.09000 * 109.47124 * 293.31804 * 10 9 2 33 33 H 0.96996 * 119.99803 * 354.98003 * 15 14 12 34 34 H 1.08996 * 117.50045 * 214.96994 * 20 11 10 35 35 H 1.09003 * 117.49840 * 359.97438 * 20 11 10 36 36 H 1.08993 * 117.50161 * 359.97438 * 21 11 10 37 37 H 1.08999 * 117.49628 * 144.99935 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8920 1.0282 0.0000 4 6 2.0383 -0.7159 -1.2532 5 6 3.5702 -0.6472 -1.2849 6 6 4.0921 -1.1579 0.0416 7 8 4.9689 -1.9871 0.0874 8 6 3.4818 -0.5980 1.3079 9 7 2.0175 -0.6886 1.2013 10 6 1.3682 -0.1630 2.4096 11 6 1.7735 -1.0114 3.6166 12 6 1.5221 -2.4914 3.4846 13 1 2.3298 -3.1541 3.2110 14 6 0.2609 -2.9995 3.7129 15 7 -0.7459 -2.1837 3.9374 16 14 -0.0177 -4.8466 3.7037 17 1 -0.3594 -5.2888 2.3278 18 1 1.2186 -5.5359 4.1525 19 1 -1.1340 -5.1834 4.6234 20 6 3.0078 -0.5723 4.4068 21 6 1.6115 -0.3883 5.0044 22 1 -0.3634 0.6230 0.8173 23 1 -0.3633 0.3963 -0.9481 24 1 -0.3634 -1.0192 0.1308 25 1 1.7207 -1.7585 -1.2312 26 1 1.6332 -0.2292 -2.1404 27 1 3.9498 -1.2707 -2.0944 28 1 3.8892 0.3842 -1.4342 29 1 3.7764 0.4448 1.4262 30 1 3.8229 -1.1772 2.1659 31 1 0.2858 -0.2007 2.2859 32 1 1.6799 0.8691 2.5698 33 1 -0.5892 -1.2297 4.0146 34 1 3.6380 -1.3538 4.8312 35 1 3.5316 0.3211 4.0666 36 1 1.2165 0.6262 5.0577 37 1 1.3230 -1.0489 5.8221 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885930414.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:17 Heat of formation + Delta-G solvation = -32.895977 kcal Electronic energy + Delta-G solvation = -17935.786860 eV Core-core repulsion = 15291.876514 eV Total energy + Delta-G solvation = -2643.910345 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.13688 -39.38186 -37.81899 -33.98999 -33.62523 -32.18117 -28.49961 -26.95847 -26.43403 -24.38915 -23.16225 -21.79298 -21.11171 -20.06972 -18.49706 -17.21186 -16.83030 -16.17210 -15.80829 -15.79906 -15.63210 -15.60167 -14.57502 -14.43724 -14.25133 -13.88952 -13.73206 -13.35845 -12.87883 -12.69636 -12.62381 -12.48923 -12.34728 -12.22482 -11.96745 -11.88732 -11.50677 -11.30042 -10.53958 -10.39009 -10.33268 -10.11913 -9.03752 -8.40515 -6.08889 0.87728 1.54215 1.61085 1.78300 2.61893 2.90968 3.14026 3.35114 3.39048 3.75154 3.87652 3.99452 4.17978 4.28722 4.32865 4.42423 4.45234 4.49206 4.58184 4.59763 4.68176 4.81031 4.89281 4.92452 4.97899 5.01664 5.07300 5.20064 5.28418 5.40697 5.44959 5.54613 6.09840 6.31291 6.37785 6.42141 6.48071 6.87927 7.65304 9.00696 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.021165 B = 0.009371 C = 0.009082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.622748 B = 2987.339895 C = 3082.155250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.069 3.931 3 H 0.059 0.941 4 C -0.098 4.098 5 C -0.158 4.158 6 C 0.370 3.630 7 O -0.501 6.501 8 C 0.011 3.989 9 N -0.521 5.521 10 C 0.110 3.890 11 C 0.005 3.995 12 C -0.545 4.545 13 H 0.024 0.976 14 C -0.014 4.014 15 N -0.934 5.934 16 Si 1.101 2.899 17 H -0.281 1.281 18 H -0.284 1.284 19 H -0.284 1.284 20 C -0.182 4.182 21 C -0.183 4.183 22 H 0.045 0.955 23 H 0.089 0.911 24 H 0.038 0.962 25 H 0.054 0.946 26 H 0.115 0.885 27 H 0.098 0.902 28 H 0.129 0.871 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.021 0.979 33 H 0.265 0.735 34 H 0.068 0.932 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.226 8.315 -10.105 13.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.038 4.038 3 H 0.077 0.923 4 C -0.136 4.136 5 C -0.196 4.196 6 C 0.248 3.752 7 O -0.376 6.376 8 C -0.117 4.117 9 N -0.248 5.248 10 C -0.018 4.018 11 C 0.004 3.996 12 C -0.584 4.584 13 H 0.042 0.958 14 C -0.213 4.213 15 N -0.572 5.572 16 Si 0.926 3.074 17 H -0.207 1.207 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.219 4.219 21 C -0.221 4.221 22 H 0.064 0.936 23 H 0.108 0.892 24 H 0.057 0.943 25 H 0.073 0.927 26 H 0.133 0.867 27 H 0.116 0.884 28 H 0.147 0.853 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.039 0.961 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.110 0.890 36 H 0.103 0.897 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.396 6.213 -10.016 12.267 hybrid contribution 1.313 1.722 0.625 2.254 sum 4.709 7.936 -9.392 13.166 Atomic orbital electron populations 1.21836 0.94098 1.01417 1.02382 1.21862 0.95933 0.96040 0.89997 0.92269 1.21623 0.92681 1.01526 0.97794 1.22387 0.97576 1.05111 0.94476 1.25416 0.78077 0.77464 0.94255 1.90362 1.28640 1.28050 1.90525 1.22786 0.89941 1.01175 0.97779 1.61784 1.02537 1.57688 1.02794 1.21566 0.98351 0.92832 0.89012 1.19220 0.97301 0.94558 0.88511 1.21228 0.96895 0.90889 1.49356 0.95757 1.26579 0.92316 1.08877 0.93572 1.70798 1.32654 1.05535 1.48179 0.83112 0.75486 0.71697 0.77095 1.20738 1.21032 1.20981 1.22890 0.90666 1.01623 1.06700 1.22727 1.00273 1.00029 0.99057 0.93552 0.89186 0.94318 0.92690 0.86660 0.88369 0.85328 0.90410 0.90528 0.91774 0.96103 0.92393 0.91327 0.88991 0.89706 0.92286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.00 8.35 71.98 0.60 -3.40 16 2 C 0.07 1.92 2.39 44.94 0.11 2.03 16 3 H 0.06 1.38 8.13 -2.38 -0.02 1.36 16 4 C -0.10 -2.24 5.40 30.73 0.17 -2.07 16 5 C -0.16 -3.46 6.24 30.20 0.19 -3.27 16 6 C 0.37 12.07 6.87 29.53 0.20 12.28 16 7 O -0.50 -20.06 17.90 -1.47 -0.03 -20.09 16 8 C 0.01 0.40 5.17 85.71 0.44 0.84 16 9 N -0.52 -19.43 4.23 -874.01 -3.70 -23.13 16 10 C 0.11 4.53 4.36 86.30 0.38 4.91 16 11 C 0.00 0.23 0.35 -52.93 -0.02 0.21 16 12 C -0.55 -30.39 8.50 25.60 0.22 -30.17 16 13 H 0.02 1.44 7.82 -2.91 -0.02 1.42 16 14 C -0.01 -0.78 5.42 84.65 0.46 -0.32 16 15 N -0.93 -54.71 13.61 21.45 0.29 -54.42 16 16 Si 1.10 52.22 29.91 68.60 2.05 54.27 16 17 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 18 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 19 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 20 C -0.18 -7.61 8.26 30.59 0.25 -7.36 16 21 C -0.18 -8.20 8.98 30.59 0.27 -7.92 16 22 H 0.05 1.41 6.62 -2.38 -0.02 1.39 16 23 H 0.09 1.88 8.13 -2.39 -0.02 1.86 16 24 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 26 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.10 1.98 8.14 -2.39 -0.02 1.97 16 28 H 0.13 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.08 2.25 8.14 -2.38 -0.02 2.23 16 30 H 0.08 3.20 6.13 -2.39 -0.01 3.19 16 31 H 0.06 2.90 5.29 -2.38 -0.01 2.89 16 32 H 0.02 0.77 8.09 -2.39 -0.02 0.75 16 33 H 0.27 15.34 5.99 -92.71 -0.56 14.78 16 34 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 35 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 36 H 0.08 3.41 8.14 -2.39 -0.02 3.39 16 37 H 0.06 2.91 8.14 -2.39 -0.02 2.89 16 Total: -1.00 -66.95 294.87 3.13 -63.81 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: 1.25 Total: 13.82 kcal Atomic # 6 Polarization: -37.53 SS G_CDS: 3.27 Total: -34.26 kcal Atomic # 7 Polarization: -74.14 SS G_CDS: -3.41 Total: -77.55 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: -0.03 Total: -20.09 kcal Atomic # 14 Polarization: 52.22 SS G_CDS: 2.05 Total: 54.27 kcal Total: -66.95 3.13 -63.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885930414.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.918 kcal (2) G-P(sol) polarization free energy of solvation -66.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds