Wall clock time and date at job start Mon Mar 30 2020 03:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35319 * 126.12517 * 2 1 4 4 C 1.50701 * 126.03977 * 359.97346 * 3 2 1 5 5 N 1.46906 * 109.47123 * 80.00078 * 4 3 2 6 6 C 1.46899 * 111.00186 * 179.97438 * 5 4 3 7 7 C 1.53002 * 109.46948 * 84.99848 * 6 5 4 8 8 C 1.52996 * 109.47163 * 205.00276 * 6 5 4 9 9 C 1.39867 * 107.91895 * 179.97438 * 3 2 1 10 10 N 1.30837 * 108.20476 * 359.73983 * 9 3 2 11 11 N 1.34941 * 126.12578 * 179.97438 * 2 1 3 12 12 C 1.46491 * 126.04116 * 0.02562 * 11 2 1 13 13 C 1.50702 * 109.46957 * 89.99832 * 12 11 2 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99942 * 179.72213 * 13 12 11 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 12 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 12 18 18 H 1.48496 * 109.47341 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.46983 * 120.00379 * 17 15 13 20 20 H 1.48503 * 109.47491 * 240.00192 * 17 15 13 21 21 H 1.09000 * 109.47007 * 270.00330 * 1 2 3 22 22 H 1.09003 * 109.47141 * 30.00623 * 1 2 3 23 23 H 1.08996 * 109.46583 * 149.99905 * 1 2 3 24 24 H 1.09001 * 109.47073 * 199.99981 * 4 3 2 25 25 H 1.09000 * 109.47603 * 320.00268 * 4 3 2 26 26 H 1.00890 * 110.99990 * 303.95725 * 5 4 3 27 27 H 1.09007 * 109.47089 * 325.00507 * 6 5 4 28 28 H 1.09007 * 109.46687 * 60.00413 * 7 6 5 29 29 H 1.08997 * 109.46970 * 179.97438 * 7 6 5 30 30 H 1.08995 * 109.47357 * 300.00593 * 7 6 5 31 31 H 1.08997 * 109.47307 * 60.00595 * 8 6 5 32 32 H 1.09008 * 109.46745 * 180.02562 * 8 6 5 33 33 H 1.08997 * 109.47241 * 299.99918 * 8 6 5 34 34 H 1.08000 * 125.89676 * 179.97438 * 9 3 2 35 35 H 1.09004 * 109.47166 * 330.00098 * 12 11 2 36 36 H 1.08994 * 109.47507 * 209.99804 * 12 11 2 37 37 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0930 0.0000 4 6 1.8433 2.5276 -0.0006 5 7 1.4638 2.9205 1.3632 6 6 1.0081 4.3165 1.4014 7 6 -0.4775 4.3780 1.0407 8 6 1.2155 4.8824 2.8076 9 6 3.6335 0.6560 0.0006 10 7 3.6334 -0.6523 0.0066 11 7 2.3026 -1.0900 0.0005 12 6 1.8540 -2.4845 0.0006 13 6 1.7006 -2.9629 -1.4202 14 1 1.9162 -2.2951 -2.2412 15 6 1.2911 -4.2552 -1.6721 16 7 1.0289 -5.0685 -0.6724 17 14 1.1084 -4.8505 -3.4332 18 1 1.4617 -3.7509 -4.3666 19 1 2.0150 -6.0042 -3.6623 20 1 -0.2962 -5.2700 -3.6709 21 1 -0.3633 0.0001 1.0277 22 1 -0.3633 0.8899 -0.5139 23 1 -0.3632 -0.8900 -0.5138 24 1 2.6514 3.1691 -0.3519 25 1 0.9828 2.6323 -0.6614 26 1 0.7610 2.3000 1.7359 27 1 1.5807 4.9053 0.6846 28 1 -1.0500 3.7892 1.7575 29 1 -0.8157 5.4138 1.0695 30 1 -0.6252 3.9748 0.0389 31 1 2.2739 4.8386 3.0645 32 1 0.8770 5.9181 2.8360 33 1 0.6430 4.2936 3.5243 34 1 4.5084 1.2893 0.0004 35 1 0.8953 -2.5577 0.5141 36 1 2.5897 -3.1028 0.5147 37 1 0.7404 -5.9776 -0.8497 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042355740.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:50 Heat of formation + Delta-G solvation = 54.429686 kcal Electronic energy + Delta-G solvation = -16742.655062 eV Core-core repulsion = 14134.824193 eV Total energy + Delta-G solvation = -2607.830869 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.46183 -37.22154 -33.81186 -32.52635 -31.90005 -30.04133 -27.22564 -27.17801 -26.46869 -23.94985 -22.83039 -20.83694 -19.80220 -18.52030 -16.71007 -15.91599 -15.39914 -14.92673 -14.43641 -14.29898 -14.04527 -13.48396 -13.21351 -12.94646 -12.55726 -12.43002 -12.29845 -11.96826 -11.82864 -11.76887 -11.46440 -11.25968 -11.14922 -10.94932 -10.88315 -10.76076 -10.26577 -9.79077 -9.71491 -8.66235 -8.30400 -8.24183 -7.50765 -6.27432 -4.34847 2.77864 3.18791 3.26875 3.32130 3.44159 3.66259 4.28760 4.50854 4.85386 5.06056 5.07615 5.25807 5.35374 5.45810 5.52147 5.54309 5.66084 5.73482 5.79297 5.82079 5.90393 5.98263 6.08595 6.15224 6.23648 6.35672 6.49958 6.82266 6.99876 7.07629 7.24588 7.52265 7.58725 7.65694 7.87883 8.06248 8.66522 8.75362 9.31758 10.80279 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.040650 B = 0.005087 C = 0.004890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.639357 B = 5503.097674 C = 5725.003683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.093 3.907 3 C -0.267 4.267 4 C 0.150 3.850 5 N -0.681 5.681 6 C 0.076 3.924 7 C -0.183 4.183 8 C -0.139 4.139 9 C 0.037 3.963 10 N -0.301 5.301 11 N -0.325 5.325 12 C 0.255 3.745 13 C -0.536 4.536 14 H 0.064 0.936 15 C 0.065 3.935 16 N -0.891 5.891 17 Si 0.906 3.094 18 H -0.271 1.271 19 H -0.280 1.280 20 H -0.281 1.281 21 H 0.069 0.931 22 H 0.070 0.930 23 H 0.082 0.918 24 H 0.070 0.930 25 H 0.027 0.973 26 H 0.340 0.660 27 H 0.074 0.926 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.051 0.949 33 H 0.052 0.948 34 H 0.168 0.832 35 H 0.051 0.949 36 H 0.052 0.948 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.328 15.945 3.217 16.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.039 4.039 3 C -0.280 4.280 4 C 0.020 3.980 5 N -0.312 5.312 6 C -0.035 4.035 7 C -0.242 4.242 8 C -0.196 4.196 9 C -0.147 4.147 10 N -0.123 5.123 11 N -0.105 5.105 12 C 0.137 3.863 13 C -0.574 4.574 14 H 0.082 0.918 15 C -0.138 4.138 16 N -0.529 5.529 17 Si 0.733 3.267 18 H -0.196 1.196 19 H -0.206 1.206 20 H -0.207 1.207 21 H 0.088 0.912 22 H 0.088 0.912 23 H 0.101 0.899 24 H 0.088 0.912 25 H 0.045 0.955 26 H 0.158 0.842 27 H 0.092 0.908 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.185 0.815 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.038 14.664 3.456 15.203 hybrid contribution -1.448 0.123 -1.349 1.982 sum -3.486 14.787 2.107 15.338 Atomic orbital electron populations 1.20386 0.88572 1.03667 1.02305 1.20742 0.94237 0.87658 1.01270 1.19407 0.92799 0.93947 1.21860 1.19991 0.98135 0.91665 0.88177 1.60713 1.45924 1.02120 1.22476 1.21562 0.93413 0.90820 0.97662 1.22533 0.97984 1.02041 1.01673 1.21760 1.02292 0.99411 0.96181 1.23422 0.96841 0.92392 1.02054 1.77328 0.98858 1.12075 1.24021 1.49314 1.02440 1.07685 1.51039 1.19657 0.96015 0.71686 0.98896 1.21356 1.46896 0.97820 0.91372 0.91751 1.24939 0.94673 0.96077 0.98130 1.69934 1.45043 1.06950 1.30974 0.86305 0.77847 0.78858 0.83702 1.19581 1.20597 1.20653 0.91202 0.91157 0.89900 0.91157 0.95511 0.84186 0.90780 0.92500 0.92432 0.92689 0.92079 0.92967 0.92889 0.81532 0.93148 0.93009 0.92301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.47 9.68 36.01 0.35 -1.12 16 2 C 0.09 1.85 6.93 -82.26 -0.57 1.28 16 3 C -0.27 -4.80 5.61 -105.05 -0.59 -5.39 16 4 C 0.15 2.09 5.64 -4.97 -0.03 2.06 16 5 N -0.68 -8.70 6.24 -107.99 -0.67 -9.38 16 6 C 0.08 0.77 3.20 -67.71 -0.22 0.56 16 7 C -0.18 -1.67 9.16 37.16 0.34 -1.33 16 8 C -0.14 -1.30 9.52 37.16 0.35 -0.94 16 9 C 0.04 0.73 11.96 -17.37 -0.21 0.52 16 10 N -0.30 -7.00 12.58 30.62 0.39 -6.61 16 11 N -0.32 -7.63 3.59 -58.32 -0.21 -7.84 16 12 C 0.26 6.60 5.82 -5.20 -0.03 6.57 16 13 C -0.54 -14.81 9.39 -34.44 -0.32 -15.14 16 14 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 15 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 16 N -0.89 -25.14 13.29 55.43 0.74 -24.40 16 17 Si 0.91 21.11 29.54 -169.99 -5.02 16.08 16 18 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 22 H 0.07 0.96 7.38 -51.93 -0.38 0.58 16 23 H 0.08 1.49 7.72 -51.93 -0.40 1.09 16 24 H 0.07 0.93 8.05 -51.93 -0.42 0.51 16 25 H 0.03 0.36 6.79 -51.93 -0.35 0.01 16 26 H 0.34 4.41 8.46 -39.30 -0.33 4.08 16 27 H 0.07 0.75 7.80 -51.93 -0.40 0.34 16 28 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.53 7.45 -51.93 -0.39 0.14 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.41 8.14 -51.92 -0.42 -0.01 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.17 2.64 8.06 -52.49 -0.42 2.22 16 35 H 0.05 1.29 7.66 -51.93 -0.40 0.89 16 36 H 0.05 1.44 8.14 -51.93 -0.42 1.02 16 37 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 311.40 15.07 4.69 4.69 Total: -1.00 -29.58 311.40 -7.11 -36.70 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -6.00 Total: 2.01 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: -1.02 Total: -11.25 kcal Atomic # 7 Polarization: -48.47 SS G_CDS: 0.24 Total: -48.23 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.58 -7.11 -36.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042355740.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.127 kcal (2) G-P(sol) polarization free energy of solvation -29.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds