Wall clock time and date at job start Mon Mar 30 2020 03:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35319 * 126.12517 * 2 1 4 4 C 1.50701 * 126.03977 * 359.97346 * 3 2 1 5 5 N 1.46906 * 109.47123 * 80.00078 * 4 3 2 6 6 C 1.46899 * 111.00186 * 179.97438 * 5 4 3 7 7 C 1.53002 * 109.46948 * 84.99848 * 6 5 4 8 8 C 1.52996 * 109.47163 * 205.00276 * 6 5 4 9 9 C 1.39867 * 107.91895 * 179.97438 * 3 2 1 10 10 N 1.30837 * 108.20476 * 359.73983 * 9 3 2 11 11 N 1.34941 * 126.12578 * 179.97438 * 2 1 3 12 12 C 1.46491 * 126.04116 * 0.02562 * 11 2 1 13 13 C 1.50702 * 109.46957 * 89.99832 * 12 11 2 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99942 * 179.72213 * 13 12 11 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 12 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 12 18 18 H 1.48496 * 109.47341 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.46983 * 120.00379 * 17 15 13 20 20 H 1.48503 * 109.47491 * 240.00192 * 17 15 13 21 21 H 1.09000 * 109.47007 * 270.00330 * 1 2 3 22 22 H 1.09003 * 109.47141 * 30.00623 * 1 2 3 23 23 H 1.08996 * 109.46583 * 149.99905 * 1 2 3 24 24 H 1.09001 * 109.47073 * 199.99981 * 4 3 2 25 25 H 1.09000 * 109.47603 * 320.00268 * 4 3 2 26 26 H 1.00890 * 110.99990 * 303.95725 * 5 4 3 27 27 H 1.09007 * 109.47089 * 325.00507 * 6 5 4 28 28 H 1.09007 * 109.46687 * 60.00413 * 7 6 5 29 29 H 1.08997 * 109.46970 * 179.97438 * 7 6 5 30 30 H 1.08995 * 109.47357 * 300.00593 * 7 6 5 31 31 H 1.08997 * 109.47307 * 60.00595 * 8 6 5 32 32 H 1.09008 * 109.46745 * 180.02562 * 8 6 5 33 33 H 1.08997 * 109.47241 * 299.99918 * 8 6 5 34 34 H 1.08000 * 125.89676 * 179.97438 * 9 3 2 35 35 H 1.09004 * 109.47166 * 330.00098 * 12 11 2 36 36 H 1.08994 * 109.47507 * 209.99804 * 12 11 2 37 37 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0930 0.0000 4 6 1.8433 2.5276 -0.0006 5 7 1.4638 2.9205 1.3632 6 6 1.0081 4.3165 1.4014 7 6 -0.4775 4.3780 1.0407 8 6 1.2155 4.8824 2.8076 9 6 3.6335 0.6560 0.0006 10 7 3.6334 -0.6523 0.0066 11 7 2.3026 -1.0900 0.0005 12 6 1.8540 -2.4845 0.0006 13 6 1.7006 -2.9629 -1.4202 14 1 1.9162 -2.2951 -2.2412 15 6 1.2911 -4.2552 -1.6721 16 7 1.0289 -5.0685 -0.6724 17 14 1.1084 -4.8505 -3.4332 18 1 1.4617 -3.7509 -4.3666 19 1 2.0150 -6.0042 -3.6623 20 1 -0.2962 -5.2700 -3.6709 21 1 -0.3633 0.0001 1.0277 22 1 -0.3633 0.8899 -0.5139 23 1 -0.3632 -0.8900 -0.5138 24 1 2.6514 3.1691 -0.3519 25 1 0.9828 2.6323 -0.6614 26 1 0.7610 2.3000 1.7359 27 1 1.5807 4.9053 0.6846 28 1 -1.0500 3.7892 1.7575 29 1 -0.8157 5.4138 1.0695 30 1 -0.6252 3.9748 0.0389 31 1 2.2739 4.8386 3.0645 32 1 0.8770 5.9181 2.8360 33 1 0.6430 4.2936 3.5243 34 1 4.5084 1.2893 0.0004 35 1 0.8953 -2.5577 0.5141 36 1 2.5897 -3.1028 0.5147 37 1 0.7404 -5.9776 -0.8497 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042355740.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:49 Heat of formation + Delta-G solvation = 35.276327 kcal Electronic energy + Delta-G solvation = -16743.485614 eV Core-core repulsion = 14134.824193 eV Total energy + Delta-G solvation = -2608.661421 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.03772 -38.15532 -35.75935 -33.82629 -33.62992 -31.38391 -28.91357 -27.97450 -27.88142 -25.56550 -24.43548 -21.77084 -21.29510 -20.06378 -18.81472 -17.45062 -16.57511 -16.28860 -15.95237 -15.63340 -15.28642 -14.92240 -14.36410 -14.31125 -14.01021 -13.74545 -13.49703 -13.30945 -13.09500 -12.99155 -12.91817 -12.73743 -12.68206 -12.35520 -12.09650 -12.02103 -11.78687 -11.62273 -11.28254 -10.75877 -10.01219 -9.31159 -8.97337 -8.35553 -6.53263 1.19288 1.35214 1.37383 1.49783 1.95254 1.99687 2.33509 2.94382 3.53907 3.90594 4.02400 4.09116 4.29429 4.33670 4.38642 4.54743 4.62762 4.70461 4.76164 4.84531 4.86044 4.96670 5.01166 5.04603 5.07363 5.17049 5.31073 5.35837 5.42737 5.50823 5.52464 5.79606 5.98390 6.28507 6.34681 6.59923 6.62501 7.08734 7.18424 8.71288 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.040650 B = 0.005087 C = 0.004890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.639357 B = 5503.097674 C = 5725.003683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.080 3.920 3 C -0.257 4.257 4 C 0.157 3.843 5 N -0.690 5.690 6 C 0.075 3.925 7 C -0.179 4.179 8 C -0.136 4.136 9 C 0.041 3.959 10 N -0.352 5.352 11 N -0.355 5.355 12 C 0.273 3.727 13 C -0.553 4.553 14 H 0.049 0.951 15 C 0.021 3.979 16 N -0.919 5.919 17 Si 0.973 3.027 18 H -0.273 1.273 19 H -0.275 1.275 20 H -0.266 1.266 21 H 0.089 0.911 22 H 0.100 0.900 23 H 0.059 0.941 24 H 0.083 0.917 25 H 0.038 0.962 26 H 0.338 0.662 27 H 0.079 0.921 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.069 0.931 33 H 0.048 0.952 34 H 0.201 0.799 35 H 0.046 0.954 36 H 0.018 0.982 37 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.201 17.907 2.511 18.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.051 4.051 3 C -0.269 4.269 4 C 0.028 3.972 5 N -0.322 5.322 6 C -0.034 4.034 7 C -0.238 4.238 8 C -0.194 4.194 9 C -0.143 4.143 10 N -0.174 5.174 11 N -0.136 5.136 12 C 0.154 3.846 13 C -0.591 4.591 14 H 0.067 0.933 15 C -0.180 4.180 16 N -0.557 5.557 17 Si 0.797 3.203 18 H -0.197 1.197 19 H -0.200 1.200 20 H -0.191 1.191 21 H 0.108 0.892 22 H 0.118 0.882 23 H 0.078 0.922 24 H 0.101 0.899 25 H 0.056 0.944 26 H 0.156 0.844 27 H 0.097 0.903 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.068 0.932 34 H 0.217 0.783 35 H 0.064 0.936 36 H 0.036 0.964 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.921 16.658 2.763 17.136 hybrid contribution -1.138 -0.367 -1.064 1.601 sum -4.059 16.291 1.699 16.875 Atomic orbital electron populations 1.20463 0.86292 1.03930 1.03683 1.21465 0.95876 0.87098 1.00639 1.19852 0.91851 0.95559 1.19625 1.19974 0.98964 0.89020 0.89242 1.60676 1.46487 1.03464 1.21536 1.21630 0.94254 0.89213 0.98312 1.22475 0.96991 1.02956 1.01363 1.21737 1.01684 1.00404 0.95527 1.24094 0.98800 0.91548 0.99870 1.77256 0.99358 1.14281 1.26542 1.49092 1.03247 1.07411 1.53830 1.19139 0.94594 0.73233 0.97653 1.21468 1.47623 0.98255 0.91736 0.93269 1.25777 0.93902 0.95937 1.02369 1.70019 1.45239 1.07430 1.33045 0.85279 0.78515 0.78112 0.78389 1.19726 1.20015 1.19054 0.89231 0.88176 0.92173 0.89893 0.94397 0.84402 0.90304 0.92536 0.91049 0.93026 0.93021 0.91176 0.93239 0.78260 0.93636 0.96403 0.91731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.68 9.68 71.24 0.69 -1.99 16 2 C 0.08 3.14 6.93 41.41 0.29 3.43 16 3 C -0.26 -8.84 5.61 -20.14 -0.11 -8.95 16 4 C 0.16 3.96 5.64 85.56 0.48 4.44 16 5 N -0.69 -15.89 6.24 -495.56 -3.09 -18.98 16 6 C 0.08 1.33 3.20 44.91 0.14 1.47 16 7 C -0.18 -2.71 9.16 71.98 0.66 -2.05 16 8 C -0.14 -2.20 9.52 71.98 0.69 -1.52 16 9 C 0.04 1.57 11.96 85.24 1.02 2.59 16 10 N -0.35 -16.74 12.58 -57.03 -0.72 -17.45 16 11 N -0.35 -17.16 3.59 -338.42 -1.22 -18.37 16 12 C 0.27 14.78 5.82 85.64 0.50 15.28 16 13 C -0.55 -31.46 9.39 25.60 0.24 -31.22 16 14 H 0.05 2.89 7.81 -2.91 -0.02 2.86 16 15 C 0.02 1.16 5.46 84.66 0.46 1.63 16 16 N -0.92 -52.64 13.29 21.45 0.28 -52.35 16 17 Si 0.97 43.38 29.54 68.60 2.03 45.41 16 18 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 19 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 20 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 21 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 22 H 0.10 2.49 7.38 -2.39 -0.02 2.47 16 23 H 0.06 2.17 7.72 -2.39 -0.02 2.15 16 24 H 0.08 1.90 8.05 -2.39 -0.02 1.88 16 25 H 0.04 0.89 6.79 -2.39 -0.02 0.87 16 26 H 0.34 7.99 8.46 -89.70 -0.76 7.24 16 27 H 0.08 1.33 7.80 -2.38 -0.02 1.31 16 28 H 0.06 0.86 8.13 -2.38 -0.02 0.84 16 29 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.05 0.82 7.45 -2.39 -0.02 0.80 16 31 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 33 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.20 5.92 8.06 -2.91 -0.02 5.90 16 35 H 0.05 2.44 7.66 -2.38 -0.02 2.43 16 36 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.27 14.54 8.31 -92.70 -0.77 13.77 16 Total: -1.00 -64.93 311.40 2.62 -62.30 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: 0.28 Total: 16.35 kcal Atomic # 6 Polarization: -21.96 SS G_CDS: 5.05 Total: -16.91 kcal Atomic # 7 Polarization: -102.42 SS G_CDS: -4.74 Total: -107.16 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -64.93 2.62 -62.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042355740.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.581 kcal (2) G-P(sol) polarization free energy of solvation -64.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds