Wall clock time and date at job start Mon Mar 30 2020 03:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.30839 * 125.89526 * 2 1 4 4 N 1.40090 * 108.20260 * 179.97438 * 3 2 1 5 5 C 1.46500 * 126.03698 * 179.97438 * 4 3 2 6 6 C 1.34950 * 107.92577 * 359.75984 * 4 3 2 7 7 C 1.50696 * 126.12933 * 180.24102 * 6 4 3 8 8 C 1.35318 * 107.74537 * 0.38722 * 6 4 3 9 9 C 1.50697 * 126.04067 * 179.87542 * 8 6 4 10 10 H 1.08993 * 109.47160 * 14.71209 * 9 8 6 11 11 C 1.53001 * 109.46991 * 254.71335 * 9 8 6 12 12 N 1.46901 * 109.47359 * 134.71628 * 9 8 6 13 13 C 1.46895 * 110.99816 * 204.99904 * 12 9 8 14 14 C 1.50706 * 109.47182 * 179.97438 * 13 12 9 15 15 H 1.08000 * 119.99302 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00436 * 179.72677 * 14 13 12 17 17 N 1.31515 * 119.99684 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00405 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47154 * 89.99418 * 18 16 14 20 20 H 1.48493 * 109.47010 * 209.99942 * 18 16 14 21 21 H 1.48502 * 109.46736 * 329.99638 * 18 16 14 22 22 H 1.08999 * 109.46870 * 270.02560 * 1 2 3 23 23 H 1.09002 * 109.46761 * 30.02478 * 1 2 3 24 24 H 1.08998 * 109.46876 * 150.02546 * 1 2 3 25 25 H 1.08999 * 109.46774 * 90.02554 * 5 4 3 26 26 H 1.08997 * 109.46988 * 210.02885 * 5 4 3 27 27 H 1.09004 * 109.47270 * 330.02926 * 5 4 3 28 28 H 1.09000 * 109.46710 * 270.17769 * 7 6 4 29 29 H 1.08997 * 109.47171 * 30.17243 * 7 6 4 30 30 H 1.08991 * 109.47319 * 150.17477 * 7 6 4 31 31 H 1.09000 * 109.47208 * 60.00220 * 11 9 8 32 32 H 1.09003 * 109.47118 * 179.97438 * 11 9 8 33 33 H 1.08998 * 109.47489 * 299.99801 * 11 9 8 34 34 H 1.00899 * 111.00258 * 81.04134 * 12 9 8 35 35 H 1.09001 * 109.47613 * 60.00104 * 13 12 9 36 36 H 1.08998 * 109.47678 * 300.00000 * 13 12 9 37 37 H 0.97004 * 120.00247 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6342 0.0006 5 6 4.7900 1.5009 0.0003 6 6 3.6143 -0.7153 0.0063 7 6 4.8351 -1.5988 0.0141 8 6 2.3272 -1.1330 0.0006 9 6 1.8600 -2.5657 0.0012 10 1 2.6909 -3.2187 0.2679 11 6 1.3475 -2.9357 -1.3921 12 7 0.7767 -2.7271 0.9802 13 6 0.6933 -4.1168 1.4487 14 6 -0.4263 -4.2432 2.4497 15 1 -1.0170 -3.3776 2.7111 16 6 -0.7003 -5.4648 3.0269 17 7 0.0149 -6.5201 2.7037 18 14 -2.0885 -5.6216 4.2671 19 1 -3.3506 -5.9526 3.5581 20 1 -1.7673 -6.7002 5.2358 21 1 -2.2510 -4.3364 4.9931 22 1 -0.3633 0.0005 1.0277 23 1 -0.3633 0.8898 -0.5142 24 1 -0.3633 -0.8902 -0.5134 25 1 5.0829 1.7161 1.0279 26 1 5.6093 0.9981 -0.5135 27 1 4.5564 2.4332 -0.5138 28 1 5.1346 -1.8136 -1.0117 29 1 5.6486 -1.0900 0.5311 30 1 4.6050 -2.5319 0.5284 31 1 2.1514 -2.8160 -2.1185 32 1 1.0100 -3.9721 -1.3918 33 1 0.5166 -2.2827 -1.6589 34 1 -0.1053 -2.4210 0.5973 35 1 1.6349 -4.3986 1.9200 36 1 0.4998 -4.7749 0.6017 37 1 -0.1781 -7.3797 3.1095 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045168864.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:58 Heat of formation + Delta-G solvation = 64.451202 kcal Electronic energy + Delta-G solvation = -17045.502629 eV Core-core repulsion = 14438.106325 eV Total energy + Delta-G solvation = -2607.396304 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.06847 -36.30993 -33.75032 -32.84832 -31.56438 -29.43869 -29.11501 -26.57333 -25.84428 -25.24006 -22.25832 -21.08226 -19.15939 -19.06947 -16.49092 -15.83575 -15.52213 -14.88449 -14.20483 -13.88795 -13.65361 -13.34523 -13.29913 -13.06349 -12.76633 -12.54835 -12.25371 -12.15197 -11.83050 -11.74604 -11.63937 -11.25625 -11.18496 -10.76333 -10.68099 -10.58477 -9.95332 -9.76232 -9.13713 -8.71375 -8.44276 -7.86660 -7.13545 -5.98373 -3.99515 2.13988 2.74854 3.14997 3.35000 3.41070 3.46161 4.47486 4.62004 4.86135 5.12107 5.14790 5.27861 5.35741 5.37638 5.46725 5.52779 5.64013 5.67738 5.73369 5.87116 5.95761 6.06252 6.14771 6.29707 6.39726 6.50270 6.55211 6.71429 7.11951 7.31270 7.36452 7.51788 7.85722 8.08305 8.21011 8.51367 8.72012 9.10425 9.65232 11.12645 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.033627 B = 0.005645 C = 0.005396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.453638 B = 4959.044112 C = 5187.861335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.097 3.903 3 N -0.311 5.311 4 N -0.384 5.384 5 C 0.108 3.892 6 C 0.073 3.927 7 C -0.089 4.089 8 C -0.197 4.197 9 C 0.157 3.843 10 H 0.074 0.926 11 C -0.173 4.173 12 N -0.681 5.681 13 C 0.194 3.806 14 C -0.511 4.511 15 H 0.062 0.938 16 C 0.056 3.944 17 N -0.899 5.899 18 Si 0.897 3.103 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.273 1.273 22 H 0.084 0.916 23 H 0.062 0.938 24 H 0.076 0.924 25 H 0.068 0.932 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.088 0.912 31 H 0.048 0.952 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.329 0.671 35 H 0.026 0.974 36 H -0.013 1.013 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.503 11.467 -7.939 16.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.069 4.069 3 N -0.134 5.134 4 N -0.168 5.168 5 C -0.034 4.034 6 C -0.053 4.053 7 C -0.148 4.148 8 C -0.209 4.209 9 C 0.045 3.955 10 H 0.092 0.908 11 C -0.232 4.232 12 N -0.312 5.312 13 C 0.068 3.932 14 C -0.549 4.549 15 H 0.080 0.920 16 C -0.145 4.145 17 N -0.539 5.539 18 Si 0.725 3.275 19 H -0.208 1.208 20 H -0.213 1.213 21 H -0.198 1.198 22 H 0.102 0.898 23 H 0.081 0.919 24 H 0.095 0.905 25 H 0.086 0.914 26 H 0.099 0.901 27 H 0.102 0.898 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.107 0.893 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.147 0.853 35 H 0.044 0.956 36 H 0.005 0.995 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 9.081 12.841 -7.349 17.360 hybrid contribution -0.938 -1.448 -0.016 1.726 sum 8.143 11.393 -7.365 15.822 Atomic orbital electron populations 1.20224 0.86948 1.02133 1.03502 1.22082 0.96716 0.90088 0.97989 1.77215 0.86151 1.22716 1.27321 1.48139 1.05291 1.03951 1.59383 1.21677 0.84242 0.94732 1.02787 1.20724 0.96899 0.84361 1.03311 1.20417 0.92875 0.98738 1.02736 1.19808 0.90660 0.96466 1.13962 1.19701 0.95832 0.89781 0.90155 0.90787 1.22475 1.00911 1.01548 0.98305 1.60754 1.06506 1.26226 1.37665 1.19572 0.97381 0.82167 0.94111 1.21203 1.15451 0.94569 1.23710 0.92025 1.24969 0.96730 0.95774 0.97070 1.69962 1.40085 0.99951 1.43883 0.86516 0.82144 0.77744 0.81117 1.20767 1.21337 1.19801 0.89783 0.91937 0.90542 0.91351 0.90056 0.89794 0.90719 0.91614 0.89332 0.93325 0.92264 0.92893 0.85314 0.95626 0.99496 0.93022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.04 9.13 36.01 0.33 -0.71 16 2 C 0.10 1.70 7.15 -82.40 -0.59 1.11 16 3 N -0.31 -5.43 12.58 33.67 0.42 -5.01 16 4 N -0.38 -5.75 4.01 -63.88 -0.26 -6.00 16 5 C 0.11 1.04 11.09 59.85 0.66 1.70 16 6 C 0.07 1.12 6.93 -82.26 -0.57 0.55 16 7 C -0.09 -1.02 9.63 36.00 0.35 -0.68 16 8 C -0.20 -3.45 5.05 -105.05 -0.53 -3.98 16 9 C 0.16 2.89 2.69 -68.87 -0.19 2.70 16 10 H 0.07 1.40 6.47 -51.93 -0.34 1.06 16 11 C -0.17 -2.82 9.13 37.16 0.34 -2.48 16 12 N -0.68 -14.71 5.76 -109.22 -0.63 -15.34 16 13 C 0.19 5.07 5.24 -4.98 -0.03 5.04 16 14 C -0.51 -14.49 9.32 -34.44 -0.32 -14.81 16 15 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 16 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 17 N -0.90 -26.86 13.29 55.43 0.74 -26.13 16 18 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 22 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 23 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.08 1.11 5.17 -51.93 -0.27 0.84 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.08 0.57 7.68 -51.93 -0.40 0.17 16 27 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.61 7.74 -51.93 -0.40 0.21 16 30 H 0.09 1.09 7.01 -51.93 -0.36 0.73 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 1.03 7.45 -51.93 -0.39 0.64 16 33 H 0.05 0.82 6.65 -51.93 -0.35 0.47 16 34 H 0.33 6.74 6.19 -39.29 -0.24 6.50 16 35 H 0.03 0.72 8.06 -51.93 -0.42 0.31 16 36 H -0.01 -0.35 7.44 -51.93 -0.39 -0.73 16 37 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 302.14 15.07 4.55 4.55 Total: -1.00 -32.91 302.14 -6.46 -39.37 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -5.63 Total: 1.83 kcal Atomic # 6 Polarization: -9.42 SS G_CDS: -0.64 Total: -10.06 kcal Atomic # 7 Polarization: -52.75 SS G_CDS: 0.27 Total: -52.48 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -32.91 -6.46 -39.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045168864.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.824 kcal (2) G-P(sol) polarization free energy of solvation -32.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds