Wall clock time and date at job start Mon Mar 30 2020 03:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46970 * 2 1 4 4 H 1.08994 * 109.47198 * 182.28218 * 3 2 1 5 5 C 1.50702 * 109.46983 * 302.28241 * 3 2 1 6 6 H 1.08002 * 120.00283 * 120.00061 * 5 3 2 7 7 C 1.37879 * 119.99753 * 300.00015 * 5 3 2 8 8 N 1.31512 * 119.99864 * 180.02562 * 7 5 3 9 9 Si 1.86797 * 120.00225 * 0.02562 * 7 5 3 10 10 H 1.48499 * 109.47251 * 90.00143 * 9 7 5 11 11 H 1.48503 * 109.47352 * 209.99853 * 9 7 5 12 12 H 1.48499 * 109.47316 * 330.00224 * 9 7 5 13 13 N 1.46902 * 109.47445 * 62.27976 * 3 2 1 14 14 C 1.46902 * 110.99638 * 87.24324 * 13 3 2 15 15 H 1.09000 * 109.47081 * 322.53263 * 14 13 3 16 16 C 1.52996 * 109.46665 * 82.53663 * 14 13 3 17 17 C 1.53002 * 109.46585 * 202.53003 * 14 13 3 18 18 N 1.46503 * 109.46984 * 65.00784 * 17 14 13 19 19 C 1.36880 * 126.39328 * 269.70497 * 18 17 14 20 20 C 1.34677 * 106.81397 * 179.84318 * 19 18 17 21 21 N 1.34127 * 108.01794 * 0.42619 * 20 19 18 22 22 C 1.30500 * 109.25885 * 359.72800 * 21 20 19 23 23 H 1.09005 * 109.46851 * 295.76696 * 1 2 3 24 24 H 1.08996 * 109.47325 * 55.77342 * 1 2 3 25 25 H 1.08999 * 109.46914 * 175.77075 * 1 2 3 26 26 H 1.08993 * 109.47010 * 119.99772 * 2 1 3 27 27 H 1.08998 * 109.47115 * 239.99826 * 2 1 3 28 28 H 0.97003 * 120.00115 * 180.02562 * 8 7 5 29 29 H 1.00897 * 110.99827 * 211.20083 * 13 3 2 30 30 H 1.09001 * 109.47325 * 299.99316 * 16 14 13 31 31 H 1.09000 * 109.47697 * 59.99978 * 16 14 13 32 32 H 1.09004 * 109.46953 * 180.02562 * 16 14 13 33 33 H 1.09004 * 109.46708 * 185.00237 * 17 14 13 34 34 H 1.08996 * 109.47484 * 305.00103 * 17 14 13 35 35 H 1.07991 * 126.59517 * 359.97438 * 19 18 17 36 36 H 1.07997 * 125.98845 * 180.12299 * 20 19 18 37 37 H 1.08000 * 125.64991 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1292 1.4428 -0.0409 5 6 1.4920 2.1690 -1.2012 6 1 0.8754 3.0456 -1.0673 7 6 1.7778 1.7147 -2.4712 8 7 1.2999 2.3490 -3.5195 9 14 2.8436 0.1982 -2.7029 10 1 1.9832 -1.0118 -2.7324 11 1 3.5882 0.3073 -3.9832 12 1 3.8067 0.0934 -1.5775 13 7 1.5959 2.1190 1.2260 14 6 2.5497 1.9020 2.3220 15 1 2.9404 0.8858 2.2678 16 6 3.7033 2.8993 2.1989 17 6 1.8408 2.1050 3.6626 18 7 0.8137 1.0743 3.8329 19 6 -0.4955 1.1600 3.4427 20 6 -1.0811 -0.0033 3.7856 21 7 -0.1570 -0.7743 4.3777 22 6 0.9804 -0.1354 4.4096 23 1 -0.3633 0.4468 0.9255 24 1 -0.3634 0.5780 -0.8497 25 1 -0.3633 -1.0249 -0.0758 26 1 1.8934 -0.5138 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.5006 2.0291 -4.4130 29 1 1.4503 3.1040 1.0630 30 1 4.2084 2.7547 1.2439 31 1 3.3126 3.9155 2.2532 32 1 4.4114 2.7380 3.0119 33 1 2.5669 2.0317 4.4723 34 1 1.3740 3.0898 3.6813 35 1 -0.9675 1.9983 2.9521 36 1 -2.1149 -0.2669 3.6180 37 1 1.9024 -0.5119 4.8275 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049235256.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:26 Heat of formation + Delta-G solvation = 61.926715 kcal Electronic energy + Delta-G solvation = -17745.783171 eV Core-core repulsion = 15138.277398 eV Total energy + Delta-G solvation = -2607.505774 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.60356 -37.53230 -34.63544 -32.43208 -31.56561 -29.16435 -28.90008 -26.42978 -26.01465 -23.15851 -21.45006 -20.90370 -20.41556 -19.26830 -17.27943 -16.46918 -15.55983 -14.99028 -14.68238 -13.99467 -13.72506 -13.61870 -13.31096 -13.04654 -12.80084 -12.68184 -12.58241 -12.22209 -11.97358 -11.71408 -11.11305 -10.87652 -10.61606 -10.49505 -10.23080 -10.04460 -9.62433 -9.36023 -9.17312 -8.99865 -8.62069 -8.06892 -7.58443 -6.15382 -4.14169 2.50603 3.19782 3.24481 3.32884 3.34285 3.57937 4.34064 4.59740 4.96770 5.02104 5.07882 5.17971 5.28635 5.34387 5.52074 5.59703 5.83157 5.89599 6.05868 6.13106 6.13524 6.24237 6.31572 6.50346 6.68734 6.73476 6.95492 7.13898 7.14720 7.20869 7.49006 7.55478 7.59673 7.81717 8.22274 8.45821 8.52258 8.88188 9.47338 10.97334 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.028290 B = 0.008334 C = 0.007441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.504433 B = 3358.793126 C = 3761.780593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.108 4.108 3 C 0.190 3.810 4 H 0.001 0.999 5 C -0.514 4.514 6 H 0.078 0.922 7 C 0.075 3.925 8 N -0.897 5.897 9 Si 0.886 3.114 10 H -0.277 1.277 11 H -0.298 1.298 12 H -0.271 1.271 13 N -0.666 5.666 14 C 0.064 3.936 15 H 0.077 0.923 16 C -0.178 4.178 17 C 0.117 3.883 18 N -0.438 5.438 19 C -0.010 4.010 20 C -0.051 4.051 21 N -0.500 5.500 22 C 0.163 3.837 23 H 0.059 0.941 24 H 0.066 0.934 25 H 0.017 0.983 26 H 0.027 0.973 27 H 0.037 0.963 28 H 0.264 0.736 29 H 0.339 0.661 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.052 0.948 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.169 0.831 36 H 0.161 0.839 37 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.291 0.137 13.620 13.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.146 4.146 3 C 0.081 3.919 4 H 0.018 0.982 5 C -0.552 4.552 6 H 0.096 0.904 7 C -0.127 4.127 8 N -0.535 5.535 9 Si 0.717 3.283 10 H -0.204 1.204 11 H -0.226 1.226 12 H -0.196 1.196 13 N -0.296 5.296 14 C -0.048 4.048 15 H 0.095 0.905 16 C -0.238 4.238 17 C -0.007 4.007 18 N -0.119 5.119 19 C -0.145 4.145 20 C -0.198 4.198 21 N -0.219 5.219 22 C -0.119 4.119 23 H 0.078 0.922 24 H 0.085 0.915 25 H 0.036 0.964 26 H 0.045 0.955 27 H 0.055 0.945 28 H 0.074 0.926 29 H 0.158 0.842 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.187 0.813 36 H 0.178 0.822 37 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 1.831 -1.053 13.895 14.055 hybrid contribution 1.553 0.476 -1.066 1.943 sum 3.384 -0.576 12.829 13.280 Atomic orbital electron populations 1.21489 0.95374 0.98298 1.02996 1.21688 0.97595 0.97929 0.97370 1.19537 0.93216 0.91415 0.87745 0.98197 1.20986 1.32433 1.13139 0.88608 0.90432 1.24870 0.95349 0.96582 0.95940 1.69880 1.45006 1.40270 0.98310 0.86877 0.80915 0.83922 0.76609 1.20368 1.22592 1.19618 1.60577 1.44834 1.17344 1.06893 1.21939 0.91421 0.99647 0.91815 0.90481 1.22441 0.99039 0.99748 1.02538 1.21971 0.89744 0.90803 0.98174 1.45272 1.09220 1.14407 1.43008 1.22583 0.84116 1.02275 1.05535 1.22118 0.99645 0.92217 1.05839 1.70177 0.99755 1.31363 1.20558 1.24695 0.99358 0.84048 1.03829 0.92250 0.91543 0.96391 0.95465 0.94476 0.92576 0.84199 0.91523 0.92305 0.92852 0.89548 0.89324 0.81345 0.82195 0.79025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.70 9.53 37.16 0.35 -2.34 16 2 C -0.11 -2.40 5.28 -26.73 -0.14 -2.54 16 3 C 0.19 4.18 1.69 -68.86 -0.12 4.06 16 4 H 0.00 0.01 5.99 -51.93 -0.31 -0.30 16 5 C -0.51 -13.46 7.73 -34.44 -0.27 -13.73 16 6 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 7 C 0.08 2.09 5.45 -17.82 -0.10 1.99 16 8 N -0.90 -26.60 13.96 55.43 0.77 -25.83 16 9 Si 0.89 21.91 24.35 -169.99 -4.14 17.77 16 10 H -0.28 -6.84 6.89 56.52 0.39 -6.45 16 11 H -0.30 -7.39 7.11 56.52 0.40 -6.99 16 12 H -0.27 -6.46 6.53 56.52 0.37 -6.10 16 13 N -0.67 -11.74 5.16 -100.95 -0.52 -12.26 16 14 C 0.06 0.89 2.65 -67.71 -0.18 0.71 16 15 H 0.08 1.21 7.27 -51.93 -0.38 0.84 16 16 C -0.18 -2.21 9.14 37.16 0.34 -1.88 16 17 C 0.12 1.31 5.78 -4.04 -0.02 1.28 16 18 N -0.44 -5.96 2.69 -118.57 -0.32 -6.27 16 19 C -0.01 -0.15 10.13 -16.56 -0.17 -0.32 16 20 C -0.05 -0.80 11.87 -17.81 -0.21 -1.01 16 21 N -0.50 -8.40 11.25 -14.66 -0.16 -8.57 16 22 C 0.16 2.33 12.56 -90.38 -1.14 1.20 16 23 H 0.06 1.22 6.54 -51.93 -0.34 0.88 16 24 H 0.07 1.60 7.00 -51.93 -0.36 1.23 16 25 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.03 0.57 7.54 -51.93 -0.39 0.18 16 27 H 0.04 0.88 3.32 -51.93 -0.17 0.71 16 28 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 29 H 0.34 6.01 7.95 -39.29 -0.31 5.70 16 30 H 0.07 0.99 7.27 -51.93 -0.38 0.61 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.17 2.27 8.06 -52.49 -0.42 1.85 16 36 H 0.16 2.21 8.06 -52.49 -0.42 1.79 16 37 H 0.19 2.11 8.06 -52.49 -0.42 1.68 16 LS Contribution 293.66 15.07 4.43 4.43 Total: -1.00 -30.46 293.66 -7.21 -37.67 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -5.62 Total: 5.63 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: -1.64 Total: -12.57 kcal Atomic # 7 Polarization: -52.70 SS G_CDS: -0.23 Total: -52.93 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.14 Total: 17.77 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.46 -7.21 -37.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049235256.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.593 kcal (2) G-P(sol) polarization free energy of solvation -30.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds