Wall clock time and date at job start Mon Mar 30 2020 03:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46970 * 2 1 4 4 H 1.08994 * 109.47198 * 182.28218 * 3 2 1 5 5 C 1.50702 * 109.46983 * 302.28241 * 3 2 1 6 6 H 1.08002 * 120.00283 * 120.00061 * 5 3 2 7 7 C 1.37879 * 119.99753 * 300.00015 * 5 3 2 8 8 N 1.31512 * 119.99864 * 180.02562 * 7 5 3 9 9 Si 1.86797 * 120.00225 * 0.02562 * 7 5 3 10 10 H 1.48499 * 109.47251 * 90.00143 * 9 7 5 11 11 H 1.48503 * 109.47352 * 209.99853 * 9 7 5 12 12 H 1.48499 * 109.47316 * 330.00224 * 9 7 5 13 13 N 1.46902 * 109.47445 * 62.27976 * 3 2 1 14 14 C 1.46902 * 110.99638 * 87.24324 * 13 3 2 15 15 H 1.09000 * 109.47081 * 322.53263 * 14 13 3 16 16 C 1.52996 * 109.46665 * 82.53663 * 14 13 3 17 17 C 1.53002 * 109.46585 * 202.53003 * 14 13 3 18 18 N 1.46503 * 109.46984 * 65.00784 * 17 14 13 19 19 C 1.36880 * 126.39328 * 269.70497 * 18 17 14 20 20 C 1.34677 * 106.81397 * 179.84318 * 19 18 17 21 21 N 1.34127 * 108.01794 * 0.42619 * 20 19 18 22 22 C 1.30500 * 109.25885 * 359.72800 * 21 20 19 23 23 H 1.09005 * 109.46851 * 295.76696 * 1 2 3 24 24 H 1.08996 * 109.47325 * 55.77342 * 1 2 3 25 25 H 1.08999 * 109.46914 * 175.77075 * 1 2 3 26 26 H 1.08993 * 109.47010 * 119.99772 * 2 1 3 27 27 H 1.08998 * 109.47115 * 239.99826 * 2 1 3 28 28 H 0.97003 * 120.00115 * 180.02562 * 8 7 5 29 29 H 1.00897 * 110.99827 * 211.20083 * 13 3 2 30 30 H 1.09001 * 109.47325 * 299.99316 * 16 14 13 31 31 H 1.09000 * 109.47697 * 59.99978 * 16 14 13 32 32 H 1.09004 * 109.46953 * 180.02562 * 16 14 13 33 33 H 1.09004 * 109.46708 * 185.00237 * 17 14 13 34 34 H 1.08996 * 109.47484 * 305.00103 * 17 14 13 35 35 H 1.07991 * 126.59517 * 359.97438 * 19 18 17 36 36 H 1.07997 * 125.98845 * 180.12299 * 20 19 18 37 37 H 1.08000 * 125.64991 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1292 1.4428 -0.0409 5 6 1.4920 2.1690 -1.2012 6 1 0.8754 3.0456 -1.0673 7 6 1.7778 1.7147 -2.4712 8 7 1.2999 2.3490 -3.5195 9 14 2.8436 0.1982 -2.7029 10 1 1.9832 -1.0118 -2.7324 11 1 3.5882 0.3073 -3.9832 12 1 3.8067 0.0934 -1.5775 13 7 1.5959 2.1190 1.2260 14 6 2.5497 1.9020 2.3220 15 1 2.9404 0.8858 2.2678 16 6 3.7033 2.8993 2.1989 17 6 1.8408 2.1050 3.6626 18 7 0.8137 1.0743 3.8329 19 6 -0.4955 1.1600 3.4427 20 6 -1.0811 -0.0033 3.7856 21 7 -0.1570 -0.7743 4.3777 22 6 0.9804 -0.1354 4.4096 23 1 -0.3633 0.4468 0.9255 24 1 -0.3634 0.5780 -0.8497 25 1 -0.3633 -1.0249 -0.0758 26 1 1.8934 -0.5138 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.5006 2.0291 -4.4130 29 1 1.4503 3.1040 1.0630 30 1 4.2084 2.7547 1.2439 31 1 3.3126 3.9155 2.2532 32 1 4.4114 2.7380 3.0119 33 1 2.5669 2.0317 4.4723 34 1 1.3740 3.0898 3.6813 35 1 -0.9675 1.9983 2.9521 36 1 -2.1149 -0.2669 3.6180 37 1 1.9024 -0.5119 4.8275 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049235256.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:25 Heat of formation + Delta-G solvation = 42.503721 kcal Electronic energy + Delta-G solvation = -17746.625416 eV Core-core repulsion = 15138.277398 eV Total energy + Delta-G solvation = -2608.348018 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.68585 -38.96375 -36.12800 -34.06810 -33.21345 -30.52975 -30.09683 -28.07833 -27.18196 -25.02985 -22.70600 -22.02828 -21.59177 -20.84765 -18.74038 -18.06021 -17.30168 -16.21999 -15.99562 -15.42535 -15.15841 -15.02259 -14.78304 -14.56016 -14.36019 -13.94950 -13.83616 -13.62538 -13.13985 -12.90922 -12.82523 -12.51393 -12.31878 -12.09068 -11.89777 -11.86650 -11.25293 -10.96485 -10.75879 -10.73154 -10.27910 -9.22054 -9.00987 -8.30947 -6.31245 1.27309 1.29955 1.38339 1.42137 2.20243 2.28153 2.44150 3.05832 3.42168 3.92703 4.04410 4.06789 4.24619 4.32281 4.38926 4.43191 4.47621 4.64772 4.72298 4.78984 4.84393 4.95583 4.99852 5.07443 5.16727 5.30454 5.34604 5.41777 5.60079 5.63900 5.72779 6.01402 6.04389 6.51356 6.55463 6.68021 6.88666 7.34071 7.35806 8.85159 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.028290 B = 0.008334 C = 0.007441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.504433 B = 3358.793126 C = 3761.780593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.106 4.106 3 C 0.200 3.800 4 H -0.006 1.006 5 C -0.501 4.501 6 H 0.047 0.953 7 C 0.022 3.978 8 N -0.944 5.944 9 Si 0.936 3.064 10 H -0.276 1.276 11 H -0.300 1.300 12 H -0.255 1.255 13 N -0.665 5.665 14 C 0.064 3.936 15 H 0.064 0.936 16 C -0.171 4.171 17 C 0.121 3.879 18 N -0.438 5.438 19 C -0.016 4.016 20 C -0.072 4.072 21 N -0.538 5.538 22 C 0.164 3.836 23 H 0.070 0.930 24 H 0.035 0.965 25 H 0.027 0.973 26 H 0.042 0.958 27 H 0.023 0.977 28 H 0.264 0.736 29 H 0.339 0.661 30 H 0.037 0.963 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.125 0.875 34 H 0.102 0.898 35 H 0.176 0.824 36 H 0.166 0.834 37 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.674 -0.202 15.854 16.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.144 4.144 3 C 0.090 3.910 4 H 0.011 0.989 5 C -0.539 4.539 6 H 0.065 0.935 7 C -0.175 4.175 8 N -0.584 5.584 9 Si 0.766 3.234 10 H -0.203 1.203 11 H -0.228 1.228 12 H -0.179 1.179 13 N -0.296 5.296 14 C -0.047 4.047 15 H 0.083 0.917 16 C -0.231 4.231 17 C -0.001 4.001 18 N -0.118 5.118 19 C -0.151 4.151 20 C -0.219 4.219 21 N -0.257 5.257 22 C -0.118 4.118 23 H 0.088 0.912 24 H 0.054 0.946 25 H 0.046 0.954 26 H 0.061 0.939 27 H 0.041 0.959 28 H 0.073 0.927 29 H 0.157 0.843 30 H 0.056 0.944 31 H 0.087 0.913 32 H 0.103 0.897 33 H 0.143 0.857 34 H 0.120 0.880 35 H 0.193 0.807 36 H 0.184 0.816 37 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 3.224 -1.384 16.161 16.537 hybrid contribution 1.097 0.641 -1.683 2.108 sum 4.320 -0.742 14.478 15.127 Atomic orbital electron populations 1.21361 0.95140 0.98450 1.02136 1.21645 0.97705 0.97733 0.97326 1.19257 0.92338 0.91358 0.88066 0.98888 1.21247 1.30584 1.11934 0.90139 0.93515 1.25568 0.96831 0.99195 0.95955 1.70008 1.47323 1.42293 0.98795 0.86039 0.79759 0.80816 0.76834 1.20306 1.22790 1.17892 1.60488 1.46231 1.16975 1.05896 1.22023 0.91531 0.99460 0.91710 0.91738 1.22344 0.98796 0.99711 1.02212 1.22116 0.89869 0.90755 0.97398 1.45415 1.09188 1.14736 1.42475 1.22726 0.84808 1.02129 1.05435 1.22377 1.00221 0.92817 1.06458 1.70155 1.00947 1.32653 1.21944 1.25325 0.99733 0.83911 1.02836 0.91155 0.94576 0.95395 0.93942 0.95895 0.92717 0.84272 0.94377 0.91316 0.89655 0.85675 0.87977 0.80683 0.81647 0.75950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.82 9.53 71.98 0.69 -4.14 16 2 C -0.11 -4.55 5.28 30.60 0.16 -4.39 16 3 C 0.20 8.58 1.69 44.17 0.07 8.65 16 4 H -0.01 -0.28 5.99 -2.39 -0.01 -0.30 16 5 C -0.50 -26.51 7.73 25.60 0.20 -26.31 16 6 H 0.05 2.72 7.83 -2.91 -0.02 2.70 16 7 C 0.02 1.26 5.45 84.66 0.46 1.73 16 8 N -0.94 -57.41 13.96 21.45 0.30 -57.12 16 9 Si 0.94 45.12 24.35 68.60 1.67 46.79 16 10 H -0.28 -13.20 6.89 99.48 0.69 -12.51 16 11 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 12 H -0.25 -11.47 6.53 99.48 0.65 -10.82 16 13 N -0.67 -22.28 5.16 -473.31 -2.44 -24.72 16 14 C 0.06 1.58 2.65 44.91 0.12 1.70 16 15 H 0.06 1.80 7.27 -2.39 -0.02 1.79 16 16 C -0.17 -3.69 9.14 71.98 0.66 -3.03 16 17 C 0.12 2.19 5.78 86.38 0.50 2.69 16 18 N -0.44 -10.49 2.69 -529.06 -1.42 -11.91 16 19 C -0.02 -0.43 10.13 83.09 0.84 0.41 16 20 C -0.07 -2.17 11.87 83.53 0.99 -1.18 16 21 N -0.54 -17.11 11.25 -200.31 -2.25 -19.36 16 22 C 0.16 4.20 12.56 180.26 2.26 6.46 16 23 H 0.07 2.79 6.54 -2.38 -0.02 2.78 16 24 H 0.04 1.73 7.00 -2.39 -0.02 1.71 16 25 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.04 1.69 7.54 -2.39 -0.02 1.67 16 27 H 0.02 1.05 3.32 -2.39 -0.01 1.04 16 28 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 29 H 0.34 11.56 7.95 -89.70 -0.71 10.84 16 30 H 0.04 1.05 7.27 -2.39 -0.02 1.03 16 31 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.13 1.41 8.14 -2.38 -0.02 1.39 16 34 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.18 4.43 8.06 -2.92 -0.02 4.40 16 36 H 0.17 4.50 8.06 -2.91 -0.02 4.48 16 37 H 0.22 3.96 8.06 -2.91 -0.02 3.94 16 Total: -1.00 -66.58 293.66 3.07 -63.51 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: 0.26 Total: 20.22 kcal Atomic # 6 Polarization: -24.36 SS G_CDS: 6.96 Total: -17.40 kcal Atomic # 7 Polarization: -107.30 SS G_CDS: -5.82 Total: -113.12 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 1.67 Total: 46.79 kcal Total: -66.58 3.07 -63.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049235256.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.015 kcal (2) G-P(sol) polarization free energy of solvation -66.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds