Wall clock time and date at job start Mon Mar 30 2020 03:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53004 * 109.46772 * 2 1 4 4 H 1.09001 * 109.47281 * 305.26146 * 3 2 1 5 5 C 1.50703 * 109.46672 * 185.25905 * 3 2 1 6 6 H 1.07999 * 120.00033 * 239.99973 * 5 3 2 7 7 C 1.37877 * 119.99914 * 60.00658 * 5 3 2 8 8 N 1.31521 * 119.99766 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99897 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46930 * 60.00055 * 9 7 5 11 11 H 1.48502 * 109.46647 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47045 * 299.99747 * 9 7 5 13 13 N 1.46900 * 109.46890 * 65.26312 * 3 2 1 14 14 C 1.46905 * 110.99703 * 203.72852 * 13 3 2 15 15 H 1.08992 * 109.46962 * 327.58456 * 14 13 3 16 16 C 1.53000 * 109.46957 * 87.58893 * 14 13 3 17 17 C 1.52998 * 109.47162 * 207.58596 * 14 13 3 18 18 N 1.46507 * 109.47166 * 64.99994 * 17 14 13 19 19 C 1.36882 * 126.39390 * 269.71452 * 18 17 14 20 20 C 1.34677 * 106.81126 * 179.84059 * 19 18 17 21 21 N 1.34122 * 108.02183 * 0.42477 * 20 19 18 22 22 C 1.30498 * 109.25643 * 359.72650 * 21 20 19 23 23 H 1.09006 * 109.46901 * 54.48734 * 1 2 3 24 24 H 1.09002 * 109.46664 * 174.48181 * 1 2 3 25 25 H 1.08994 * 109.46986 * 294.48603 * 1 2 3 26 26 H 1.08994 * 109.47025 * 240.00083 * 2 1 3 27 27 H 1.08998 * 109.46806 * 119.99674 * 2 1 3 28 28 H 0.97003 * 119.99656 * 180.02562 * 8 7 5 29 29 H 1.00898 * 111.00494 * 327.68474 * 13 3 2 30 30 H 1.08997 * 109.46937 * 175.68980 * 16 14 13 31 31 H 1.08996 * 109.47193 * 55.68466 * 16 14 13 32 32 H 1.09000 * 109.46969 * 295.68614 * 16 14 13 33 33 H 1.08996 * 109.47292 * 185.00126 * 17 14 13 34 34 H 1.09009 * 109.47335 * 305.00369 * 17 14 13 35 35 H 1.07997 * 126.59856 * 359.97438 * 19 18 17 36 36 H 1.07995 * 125.98427 * 180.11734 * 20 19 18 37 37 H 1.08001 * 125.65307 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6017 1.9829 -0.8391 5 6 3.5414 1.4445 -0.1302 6 1 4.1500 1.8879 0.6440 7 6 4.1380 0.8804 -1.2378 8 7 3.3968 0.3401 -2.1805 9 14 5.9990 0.8835 -1.3996 10 1 6.5964 0.1477 -0.2564 11 1 6.3863 0.2209 -2.6709 12 1 6.4935 2.2837 -1.3999 13 7 1.6568 2.0973 1.2579 14 6 1.6064 3.5568 1.0977 15 1 2.3556 3.8683 0.3700 16 6 0.2168 3.9683 0.6073 17 6 1.8920 4.2277 2.4427 18 7 3.2660 3.9302 2.8549 19 6 3.6742 2.8660 3.6130 20 6 5.0095 2.9748 3.7501 21 7 5.4045 4.0804 3.1016 22 6 4.3655 4.6577 2.5629 23 1 -0.3633 0.5970 -0.8366 24 1 -0.3633 -1.0229 -0.0988 25 1 -0.3633 0.4259 0.9352 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.8166 -0.0571 -2.9595 29 1 0.7764 1.7403 1.5979 30 1 0.1550 5.0556 0.5615 31 1 -0.5384 3.5901 1.2962 32 1 0.0439 3.5525 -0.3854 33 1 1.7675 5.3060 2.3445 34 1 1.1975 3.8485 3.1926 35 1 3.0465 2.0875 4.0207 36 1 5.6493 2.2940 4.2919 37 1 4.3823 5.5667 1.9798 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049235257.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:29 Heat of formation + Delta-G solvation = 55.022827 kcal Electronic energy + Delta-G solvation = -17659.070234 eV Core-core repulsion = 15051.265086 eV Total energy + Delta-G solvation = -2607.805149 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.34129 -37.28104 -34.38847 -32.25424 -31.38074 -29.02125 -28.63545 -26.16280 -25.99578 -22.88126 -21.02539 -20.66260 -20.05447 -19.61361 -16.91531 -16.20585 -15.22635 -14.80756 -14.31709 -14.12205 -13.69326 -13.27902 -13.12875 -12.98472 -12.69341 -12.53499 -12.18949 -11.86292 -11.73566 -11.47041 -11.08590 -10.80490 -10.66973 -10.58744 -9.94444 -9.79559 -9.66608 -9.38088 -9.10300 -8.88989 -8.32983 -7.83906 -7.30557 -5.95154 -3.98366 2.75164 3.40521 3.42322 3.45601 3.50823 3.83238 4.49169 4.82301 5.17802 5.25586 5.29711 5.34845 5.48208 5.49103 5.68037 5.75403 6.01784 6.07737 6.09533 6.11044 6.28586 6.33553 6.38392 6.46486 6.78191 6.93560 7.03353 7.12887 7.38661 7.43133 7.74021 7.83286 7.94320 8.21275 8.36808 8.70219 8.70985 9.11252 9.67595 11.10097 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.016436 B = 0.011685 C = 0.007938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.183558 B = 2395.742329 C = 3526.532907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.125 4.125 3 C 0.224 3.776 4 H 0.000 1.000 5 C -0.488 4.488 6 H 0.062 0.938 7 C 0.056 3.944 8 N -0.899 5.899 9 Si 0.893 3.107 10 H -0.277 1.277 11 H -0.291 1.291 12 H -0.278 1.278 13 N -0.676 5.676 14 C 0.071 3.929 15 H 0.089 0.911 16 C -0.175 4.175 17 C 0.118 3.882 18 N -0.434 5.434 19 C -0.009 4.009 20 C -0.052 4.052 21 N -0.501 5.501 22 C 0.169 3.831 23 H 0.041 0.959 24 H 0.036 0.964 25 H 0.034 0.966 26 H 0.099 0.901 27 H 0.040 0.960 28 H 0.259 0.741 29 H 0.316 0.684 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.165 0.835 36 H 0.158 0.842 37 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.633 6.021 7.648 11.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.164 4.164 3 C 0.117 3.883 4 H 0.018 0.982 5 C -0.527 4.527 6 H 0.080 0.920 7 C -0.144 4.144 8 N -0.539 5.539 9 Si 0.721 3.279 10 H -0.203 1.203 11 H -0.216 1.216 12 H -0.204 1.204 13 N -0.307 5.307 14 C -0.041 4.041 15 H 0.108 0.892 16 C -0.235 4.235 17 C -0.006 4.006 18 N -0.115 5.115 19 C -0.144 4.144 20 C -0.199 4.199 21 N -0.220 5.220 22 C -0.114 4.114 23 H 0.060 0.940 24 H 0.055 0.945 25 H 0.053 0.947 26 H 0.117 0.883 27 H 0.059 0.941 28 H 0.069 0.931 29 H 0.134 0.866 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.183 0.817 36 H 0.176 0.824 37 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -5.293 6.233 7.619 11.176 hybrid contribution -0.736 -0.383 -0.840 1.181 sum -6.029 5.850 6.778 10.794 Atomic orbital electron populations 1.21876 0.99693 0.99676 0.99352 1.21761 0.91068 1.00444 1.03089 1.19129 0.95450 0.89770 0.83958 0.98198 1.21155 0.91029 1.36210 1.04266 0.91998 1.24919 0.97977 0.95637 0.95857 1.69865 1.34752 1.39601 1.09701 0.86634 0.85990 0.78328 0.76950 1.20262 1.21649 1.20366 1.60761 1.34421 1.01221 1.34268 1.21838 0.96302 0.91246 0.94747 0.89247 1.22435 0.97809 1.01156 1.02088 1.21952 0.80587 0.99882 0.98166 1.45181 1.08090 1.20158 1.38103 1.22454 0.96772 0.93954 1.01241 1.22053 0.92939 0.98500 1.06422 1.70146 1.29158 1.09193 1.13504 1.24639 0.81413 1.00463 1.04852 0.93993 0.94458 0.94723 0.88275 0.94122 0.93145 0.86608 0.92789 0.92940 0.91925 0.89878 0.89921 0.81725 0.82436 0.79090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 9.63 37.16 0.36 -2.37 16 2 C -0.13 -2.84 5.37 -26.73 -0.14 -2.98 16 3 C 0.22 5.25 1.85 -68.86 -0.13 5.12 16 4 H 0.00 0.01 7.35 -51.93 -0.38 -0.37 16 5 C -0.49 -13.23 8.44 -34.44 -0.29 -13.53 16 6 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 7 C 0.06 1.57 5.29 -17.82 -0.09 1.47 16 8 N -0.90 -25.53 11.29 55.43 0.63 -24.91 16 9 Si 0.89 22.46 29.54 -169.99 -5.02 17.44 16 10 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 11 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 12 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 13 N -0.68 -12.70 5.75 -100.95 -0.58 -13.28 16 14 C 0.07 1.14 2.62 -67.71 -0.18 0.96 16 15 H 0.09 1.75 7.56 -51.93 -0.39 1.36 16 16 C -0.18 -2.33 9.17 37.16 0.34 -1.99 16 17 C 0.12 1.56 5.78 -4.04 -0.02 1.53 16 18 N -0.43 -7.04 2.69 -118.57 -0.32 -7.36 16 19 C -0.01 -0.16 11.34 -16.56 -0.19 -0.35 16 20 C -0.05 -0.95 11.87 -17.81 -0.21 -1.17 16 21 N -0.50 -9.93 11.25 -14.67 -0.17 -10.10 16 22 C 0.17 2.92 12.56 -90.38 -1.14 1.78 16 23 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 24 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.03 0.56 6.63 -51.93 -0.34 0.21 16 26 H 0.10 2.59 5.95 -51.93 -0.31 2.28 16 27 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 29 H 0.32 5.41 6.22 -39.29 -0.24 5.17 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.62 8.05 -51.93 -0.42 0.20 16 32 H 0.06 0.96 7.65 -51.93 -0.40 0.56 16 33 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.08 0.97 8.14 -51.92 -0.42 0.55 16 35 H 0.17 2.51 8.06 -52.49 -0.42 2.09 16 36 H 0.16 2.57 8.06 -52.49 -0.42 2.15 16 37 H 0.19 2.67 8.06 -52.49 -0.42 2.25 16 LS Contribution 304.34 15.07 4.59 4.59 Total: -1.00 -30.55 304.34 -8.40 -38.95 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -5.84 Total: 6.19 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: -1.69 Total: -11.52 kcal Atomic # 7 Polarization: -55.20 SS G_CDS: -0.44 Total: -55.64 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.55 -8.40 -38.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049235257.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.975 kcal (2) G-P(sol) polarization free energy of solvation -30.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds