Wall clock time and date at job start Mon Mar 30 2020 03:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53004 * 109.46772 * 2 1 4 4 H 1.09001 * 109.47281 * 305.26146 * 3 2 1 5 5 C 1.50703 * 109.46672 * 185.25905 * 3 2 1 6 6 H 1.07999 * 120.00033 * 239.99973 * 5 3 2 7 7 C 1.37877 * 119.99914 * 60.00658 * 5 3 2 8 8 N 1.31521 * 119.99766 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99897 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46930 * 60.00055 * 9 7 5 11 11 H 1.48502 * 109.46647 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47045 * 299.99747 * 9 7 5 13 13 N 1.46900 * 109.46890 * 65.26312 * 3 2 1 14 14 C 1.46905 * 110.99703 * 203.72852 * 13 3 2 15 15 H 1.08992 * 109.46962 * 327.58456 * 14 13 3 16 16 C 1.53000 * 109.46957 * 87.58893 * 14 13 3 17 17 C 1.52998 * 109.47162 * 207.58596 * 14 13 3 18 18 N 1.46507 * 109.47166 * 64.99994 * 17 14 13 19 19 C 1.36882 * 126.39390 * 269.71452 * 18 17 14 20 20 C 1.34677 * 106.81126 * 179.84059 * 19 18 17 21 21 N 1.34122 * 108.02183 * 0.42477 * 20 19 18 22 22 C 1.30498 * 109.25643 * 359.72650 * 21 20 19 23 23 H 1.09006 * 109.46901 * 54.48734 * 1 2 3 24 24 H 1.09002 * 109.46664 * 174.48181 * 1 2 3 25 25 H 1.08994 * 109.46986 * 294.48603 * 1 2 3 26 26 H 1.08994 * 109.47025 * 240.00083 * 2 1 3 27 27 H 1.08998 * 109.46806 * 119.99674 * 2 1 3 28 28 H 0.97003 * 119.99656 * 180.02562 * 8 7 5 29 29 H 1.00898 * 111.00494 * 327.68474 * 13 3 2 30 30 H 1.08997 * 109.46937 * 175.68980 * 16 14 13 31 31 H 1.08996 * 109.47193 * 55.68466 * 16 14 13 32 32 H 1.09000 * 109.46969 * 295.68614 * 16 14 13 33 33 H 1.08996 * 109.47292 * 185.00126 * 17 14 13 34 34 H 1.09009 * 109.47335 * 305.00369 * 17 14 13 35 35 H 1.07997 * 126.59856 * 359.97438 * 19 18 17 36 36 H 1.07995 * 125.98427 * 180.11734 * 20 19 18 37 37 H 1.08001 * 125.65307 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6017 1.9829 -0.8391 5 6 3.5414 1.4445 -0.1302 6 1 4.1500 1.8879 0.6440 7 6 4.1380 0.8804 -1.2378 8 7 3.3968 0.3401 -2.1805 9 14 5.9990 0.8835 -1.3996 10 1 6.5964 0.1477 -0.2564 11 1 6.3863 0.2209 -2.6709 12 1 6.4935 2.2837 -1.3999 13 7 1.6568 2.0973 1.2579 14 6 1.6064 3.5568 1.0977 15 1 2.3556 3.8683 0.3700 16 6 0.2168 3.9683 0.6073 17 6 1.8920 4.2277 2.4427 18 7 3.2660 3.9302 2.8549 19 6 3.6742 2.8660 3.6130 20 6 5.0095 2.9748 3.7501 21 7 5.4045 4.0804 3.1016 22 6 4.3655 4.6577 2.5629 23 1 -0.3633 0.5970 -0.8366 24 1 -0.3633 -1.0229 -0.0988 25 1 -0.3633 0.4259 0.9352 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.8166 -0.0571 -2.9595 29 1 0.7764 1.7403 1.5979 30 1 0.1550 5.0556 0.5615 31 1 -0.5384 3.5901 1.2962 32 1 0.0439 3.5525 -0.3854 33 1 1.7675 5.3060 2.3445 34 1 1.1975 3.8485 3.1926 35 1 3.0465 2.0875 4.0207 36 1 5.6493 2.2940 4.2919 37 1 4.3823 5.5667 1.9798 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049235257.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:29 Heat of formation + Delta-G solvation = 36.771637 kcal Electronic energy + Delta-G solvation = -17659.861665 eV Core-core repulsion = 15051.265086 eV Total energy + Delta-G solvation = -2608.596580 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.64870 -38.79992 -35.97408 -34.01456 -32.99022 -30.46623 -30.01095 -27.99763 -27.19192 -24.68709 -22.35112 -22.02264 -21.47189 -21.27757 -18.29312 -18.17227 -16.95354 -16.19085 -16.02315 -15.59445 -15.12543 -14.78267 -14.56608 -14.39060 -14.12808 -14.00205 -13.49717 -13.30922 -13.12752 -12.90100 -12.83939 -12.59874 -12.57616 -11.97894 -11.94428 -11.56593 -11.42102 -10.99010 -10.75694 -10.44026 -10.25106 -9.20583 -8.88515 -8.07937 -6.16300 1.35233 1.35846 1.43865 1.45227 2.26178 2.40897 2.44953 3.17949 3.56709 3.99893 4.04693 4.12402 4.29928 4.39282 4.50861 4.53596 4.59838 4.68430 4.73138 4.77407 4.93911 5.00828 5.05827 5.18885 5.24900 5.31803 5.41259 5.60783 5.65072 5.77861 5.92723 6.06366 6.38388 6.51621 6.60017 6.98768 7.07114 7.36724 7.52464 8.94281 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.016436 B = 0.011685 C = 0.007938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.183558 B = 2395.742329 C = 3526.532907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.121 4.121 3 C 0.236 3.764 4 H -0.030 1.030 5 C -0.491 4.491 6 H 0.041 0.959 7 C 0.015 3.985 8 N -0.917 5.917 9 Si 0.938 3.062 10 H -0.281 1.281 11 H -0.282 1.282 12 H -0.283 1.283 13 N -0.675 5.675 14 C 0.071 3.929 15 H 0.047 0.953 16 C -0.165 4.165 17 C 0.120 3.880 18 N -0.434 5.434 19 C -0.010 4.010 20 C -0.081 4.081 21 N -0.542 5.542 22 C 0.161 3.839 23 H 0.036 0.964 24 H 0.052 0.948 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.033 0.967 28 H 0.258 0.742 29 H 0.330 0.670 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.036 0.964 33 H 0.119 0.881 34 H 0.109 0.891 35 H 0.183 0.817 36 H 0.166 0.834 37 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.405 6.835 8.763 13.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.160 4.160 3 C 0.128 3.872 4 H -0.012 1.012 5 C -0.530 4.530 6 H 0.059 0.941 7 C -0.183 4.183 8 N -0.559 5.559 9 Si 0.766 3.234 10 H -0.207 1.207 11 H -0.207 1.207 12 H -0.209 1.209 13 N -0.307 5.307 14 C -0.041 4.041 15 H 0.066 0.934 16 C -0.225 4.225 17 C -0.002 4.002 18 N -0.114 5.114 19 C -0.146 4.146 20 C -0.227 4.227 21 N -0.261 5.261 22 C -0.122 4.122 23 H 0.055 0.945 24 H 0.071 0.929 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.052 0.948 28 H 0.067 0.933 29 H 0.149 0.851 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.055 0.945 33 H 0.137 0.863 34 H 0.127 0.873 35 H 0.200 0.800 36 H 0.184 0.816 37 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -7.086 7.054 8.742 13.282 hybrid contribution -0.188 -0.600 -1.173 1.331 sum -7.274 6.454 7.569 12.323 Atomic orbital electron populations 1.21721 0.96026 1.00910 1.00645 1.21575 0.94342 0.99215 1.00863 1.18771 0.93099 0.90369 0.85002 1.01242 1.21352 0.93097 1.35237 1.03358 0.94117 1.25464 1.00784 0.95971 0.96077 1.69967 1.35612 1.40317 1.09961 0.85927 0.82772 0.77769 0.76937 1.20682 1.20741 1.20944 1.60585 1.35480 1.02983 1.31647 1.21837 0.97004 0.89525 0.95725 0.93445 1.22308 0.96190 1.02972 1.00982 1.22167 0.79361 1.01912 0.96752 1.45374 1.09057 1.19543 1.37428 1.22748 0.96568 0.94334 1.00903 1.22398 0.94119 0.98899 1.07332 1.70097 1.30847 1.10285 1.14911 1.25193 0.81404 1.01146 1.04436 0.94519 0.92939 0.91861 0.91972 0.94807 0.93287 0.85080 0.90013 0.90503 0.94517 0.86266 0.87320 0.79992 0.81635 0.76522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.70 9.63 71.98 0.69 -4.00 16 2 C -0.12 -5.47 5.37 30.60 0.16 -5.31 16 3 C 0.24 11.08 1.85 44.17 0.08 11.17 16 4 H -0.03 -1.58 7.35 -2.39 -0.02 -1.60 16 5 C -0.49 -27.12 8.44 25.60 0.22 -26.90 16 6 H 0.04 2.39 7.81 -2.91 -0.02 2.37 16 7 C 0.01 0.85 5.29 84.65 0.45 1.29 16 8 N -0.92 -53.11 11.29 21.45 0.24 -52.87 16 9 Si 0.94 46.88 29.54 68.60 2.03 48.90 16 10 H -0.28 -14.12 7.11 99.48 0.71 -13.41 16 11 H -0.28 -13.60 7.11 99.48 0.71 -12.90 16 12 H -0.28 -14.30 7.11 99.48 0.71 -13.59 16 13 N -0.68 -24.30 5.75 -473.30 -2.72 -27.02 16 14 C 0.07 2.12 2.62 44.91 0.12 2.24 16 15 H 0.05 1.84 7.56 -2.39 -0.02 1.83 16 16 C -0.17 -3.87 9.17 71.98 0.66 -3.21 16 17 C 0.12 2.74 5.78 86.38 0.50 3.24 16 18 N -0.43 -13.20 2.69 -529.04 -1.42 -14.62 16 19 C -0.01 -0.33 11.34 83.09 0.94 0.61 16 20 C -0.08 -2.97 11.87 83.53 0.99 -1.98 16 21 N -0.54 -21.43 11.25 -200.31 -2.25 -23.69 16 22 C 0.16 5.39 12.56 180.26 2.26 7.65 16 23 H 0.04 1.30 8.14 -2.38 -0.02 1.28 16 24 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.06 1.82 6.63 -2.39 -0.02 1.80 16 26 H 0.06 3.29 5.95 -2.39 -0.01 3.27 16 27 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 29 H 0.33 10.30 6.22 -89.70 -0.56 9.74 16 30 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.08 1.45 8.05 -2.39 -0.02 1.43 16 32 H 0.04 1.05 7.65 -2.39 -0.02 1.04 16 33 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.11 2.00 8.14 -2.38 -0.02 1.98 16 35 H 0.18 5.18 8.06 -2.91 -0.02 5.15 16 36 H 0.17 5.47 8.06 -2.91 -0.02 5.45 16 37 H 0.22 5.72 8.06 -2.91 -0.02 5.70 16 Total: -1.00 -68.24 304.34 3.43 -64.81 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: 0.48 Total: 19.70 kcal Atomic # 6 Polarization: -22.28 SS G_CDS: 7.08 Total: -15.20 kcal Atomic # 7 Polarization: -112.05 SS G_CDS: -6.15 Total: -118.20 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 2.03 Total: 48.90 kcal Total: -68.24 3.43 -64.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049235257.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.577 kcal (2) G-P(sol) polarization free energy of solvation -68.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds