Wall clock time and date at job start Mon Mar 30 2020 03:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46701 * 2 1 4 4 H 1.09004 * 109.46692 * 175.12033 * 3 2 1 5 5 C 1.50694 * 109.47087 * 55.12418 * 3 2 1 6 6 H 1.08003 * 120.00338 * 239.99357 * 5 3 2 7 7 C 1.37882 * 120.00210 * 59.99960 * 5 3 2 8 8 N 1.31512 * 120.00001 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00160 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47064 * 59.99854 * 9 7 5 11 11 H 1.48499 * 109.47043 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47274 * 299.99960 * 9 7 5 13 13 N 1.46898 * 109.47488 * 295.12102 * 3 2 1 14 14 C 1.46895 * 111.00065 * 273.92665 * 13 3 2 15 15 H 1.09001 * 109.47744 * 37.63008 * 14 13 3 16 16 C 1.52998 * 109.47131 * 277.63104 * 14 13 3 17 17 C 1.53006 * 109.47344 * 157.63241 * 14 13 3 18 18 N 1.46499 * 109.46832 * 294.99974 * 17 14 13 19 19 C 1.36881 * 126.39261 * 269.70710 * 18 17 14 20 20 C 1.34672 * 106.81503 * 179.84304 * 19 18 17 21 21 N 1.34127 * 108.02268 * 0.42713 * 20 19 18 22 22 C 1.30504 * 109.25130 * 359.72958 * 21 20 19 23 23 H 1.09001 * 109.47167 * 55.69082 * 1 2 3 24 24 H 1.08999 * 109.47617 * 295.69340 * 1 2 3 25 25 H 1.09000 * 109.47277 * 175.68870 * 1 2 3 26 26 H 1.08994 * 109.47501 * 119.99636 * 2 1 3 27 27 H 1.09002 * 109.47358 * 240.00367 * 2 1 3 28 28 H 0.96989 * 120.00434 * 180.02562 * 8 7 5 29 29 H 1.00906 * 110.99471 * 37.87585 * 13 3 2 30 30 H 1.09002 * 109.47402 * 300.00202 * 16 14 13 31 31 H 1.09000 * 109.46951 * 59.99811 * 16 14 13 32 32 H 1.08994 * 109.47753 * 180.02562 * 16 14 13 33 33 H 1.08999 * 109.46981 * 54.99776 * 17 14 13 34 34 H 1.09003 * 109.46966 * 174.99756 * 17 14 13 35 35 H 1.07997 * 126.59607 * 359.97438 * 19 18 17 36 36 H 1.08005 * 125.99100 * 180.11526 * 20 19 18 37 37 H 1.08003 * 125.64882 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1264 1.4438 0.0874 5 6 1.4413 2.1869 1.1656 6 1 0.8314 3.0612 0.9923 7 6 1.6725 1.7519 2.4534 8 7 2.4149 0.6872 2.6645 9 14 0.9311 2.6750 3.8983 10 1 -0.5492 2.6739 3.7795 11 1 1.3260 2.0098 5.1659 12 1 1.4266 4.0750 3.8982 13 7 1.6488 2.1003 -1.2539 14 6 2.6345 1.8441 -2.3125 15 1 3.0033 0.8220 -2.2261 16 6 3.8028 2.8215 -2.1689 17 6 1.9754 2.0346 -3.6801 18 7 0.9347 1.0205 -3.8661 19 6 1.0981 -0.2178 -4.4260 20 6 -0.1058 -0.8206 -4.3968 21 7 -0.9825 0.0301 -3.8429 22 6 -0.3663 1.1350 -3.5225 23 1 -0.3633 0.5793 -0.8489 24 1 -0.3634 0.4455 0.9260 25 1 -0.3634 -1.0247 -0.0773 26 1 1.8934 -0.5137 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 2.5772 0.3809 3.5704 29 1 0.7259 1.8108 -1.5415 30 1 3.4341 3.8437 -2.2553 31 1 4.2723 2.6859 -1.1946 32 1 4.5340 2.6318 -2.9545 33 1 1.5289 3.0275 -3.7331 34 1 2.7269 1.9319 -4.4630 35 1 2.0164 -0.6326 -4.8145 36 1 -0.3278 -1.8130 -4.7606 37 1 -0.8213 1.9979 -3.0590 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049235259.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:37 Heat of formation + Delta-G solvation = 57.428157 kcal Electronic energy + Delta-G solvation = -17698.938717 eV Core-core repulsion = 15091.237871 eV Total energy + Delta-G solvation = -2607.700846 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.82909 -37.39362 -34.58520 -32.34974 -31.16900 -29.23662 -28.71542 -26.38896 -25.82645 -23.31642 -21.28789 -21.04484 -20.44254 -18.98030 -17.25199 -16.29403 -15.58584 -15.11743 -14.54785 -14.03358 -13.91343 -13.57728 -13.22889 -12.94244 -12.58511 -12.55865 -12.19537 -12.00201 -11.53946 -11.44930 -11.03917 -10.85618 -10.69694 -10.51160 -9.96017 -9.85353 -9.74209 -9.54330 -9.27454 -8.99633 -8.34717 -8.28434 -7.35045 -5.98371 -4.00256 2.29341 3.01921 3.33780 3.38248 3.41119 3.42993 4.41883 4.70394 4.95575 5.00088 5.07567 5.28072 5.31003 5.33466 5.60812 5.76036 5.86191 5.90106 6.13266 6.32130 6.40069 6.43800 6.50363 6.60394 6.63584 6.94787 6.96896 7.23737 7.28857 7.40619 7.50317 7.69525 7.86074 8.25050 8.31644 8.44762 8.56965 9.04311 9.63380 11.08705 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.029572 B = 0.007608 C = 0.006782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.602747 B = 3679.568557 C = 4127.319993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.142 4.142 3 C 0.218 3.782 4 H 0.033 0.967 5 C -0.490 4.490 6 H 0.060 0.940 7 C 0.058 3.942 8 N -0.896 5.896 9 Si 0.894 3.106 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.278 1.278 13 N -0.680 5.680 14 C 0.067 3.933 15 H 0.040 0.960 16 C -0.133 4.133 17 C 0.100 3.900 18 N -0.453 5.453 19 C -0.059 4.059 20 C -0.033 4.033 21 N -0.496 5.496 22 C 0.186 3.814 23 H 0.031 0.969 24 H 0.062 0.938 25 H 0.021 0.979 26 H 0.092 0.908 27 H 0.006 0.994 28 H 0.260 0.740 29 H 0.327 0.673 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.045 0.955 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.168 0.832 36 H 0.164 0.836 37 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.752 0.849 -12.409 12.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.181 4.181 3 C 0.110 3.890 4 H 0.051 0.949 5 C -0.528 4.528 6 H 0.079 0.921 7 C -0.143 4.143 8 N -0.536 5.536 9 Si 0.722 3.278 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.204 1.204 13 N -0.314 5.314 14 C -0.045 4.045 15 H 0.058 0.942 16 C -0.192 4.192 17 C -0.022 4.022 18 N -0.135 5.135 19 C -0.193 4.193 20 C -0.182 4.182 21 N -0.214 5.214 22 C -0.096 4.096 23 H 0.050 0.950 24 H 0.081 0.919 25 H 0.040 0.960 26 H 0.110 0.890 27 H 0.024 0.976 28 H 0.070 0.930 29 H 0.147 0.853 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.064 0.936 33 H 0.117 0.883 34 H 0.108 0.892 35 H 0.185 0.815 36 H 0.181 0.819 37 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 0.372 1.304 -11.939 12.016 hybrid contribution 0.411 -0.467 0.591 0.858 sum 0.783 0.837 -11.348 11.406 Atomic orbital electron populations 1.21506 0.97388 0.97963 1.01121 1.22065 0.95181 1.00947 0.99920 1.19205 0.95844 0.88592 0.85310 0.94928 1.20992 1.30724 1.11508 0.89616 0.92136 1.24908 0.95504 0.95145 0.98745 1.69865 1.38873 1.23864 1.20963 0.86631 0.79601 0.79917 0.81670 1.20342 1.21509 1.20354 1.61099 1.03648 1.63063 1.03565 1.21820 0.94597 0.98176 0.89901 0.94165 1.21708 0.96185 0.99393 1.01910 1.22276 0.89792 0.91083 0.99088 1.45619 1.09783 1.13616 1.44466 1.22648 1.01376 0.87434 1.07799 1.22212 0.89694 1.00402 1.05864 1.70277 1.33077 1.01511 1.16532 1.24959 0.80850 0.99966 1.03825 0.95012 0.91927 0.96005 0.89002 0.97563 0.93048 0.85257 0.92056 0.91423 0.93573 0.88261 0.89176 0.81482 0.81873 0.78130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.77 9.38 37.16 0.35 -2.42 16 2 C -0.14 -3.40 5.50 -26.73 -0.15 -3.54 16 3 C 0.22 5.27 2.14 -68.87 -0.15 5.12 16 4 H 0.03 0.87 6.92 -51.93 -0.36 0.51 16 5 C -0.49 -13.07 7.44 -34.44 -0.26 -13.33 16 6 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 7 C 0.06 1.57 5.27 -17.82 -0.09 1.47 16 8 N -0.90 -25.24 11.37 55.43 0.63 -24.61 16 9 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 N -0.68 -13.51 6.04 -100.95 -0.61 -14.12 16 14 C 0.07 1.07 2.70 -67.71 -0.18 0.89 16 15 H 0.04 0.73 7.18 -51.93 -0.37 0.36 16 16 C -0.13 -1.96 9.37 37.16 0.35 -1.61 16 17 C 0.10 1.25 5.73 -4.04 -0.02 1.22 16 18 N -0.45 -6.39 2.62 -118.57 -0.31 -6.70 16 19 C -0.06 -0.81 11.58 -16.56 -0.19 -1.00 16 20 C -0.03 -0.50 11.87 -17.81 -0.21 -0.71 16 21 N -0.50 -8.45 11.25 -14.66 -0.16 -8.61 16 22 C 0.19 2.88 10.08 -90.38 -0.91 1.97 16 23 H 0.03 0.67 5.58 -51.93 -0.29 0.38 16 24 H 0.06 1.53 7.23 -51.93 -0.38 1.15 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.09 2.47 6.21 -51.93 -0.32 2.15 16 27 H 0.01 0.13 7.43 -51.93 -0.39 -0.25 16 28 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.33 6.35 3.82 -39.29 -0.15 6.20 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.07 1.17 7.25 -51.93 -0.38 0.79 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.17 1.79 8.06 -52.49 -0.42 1.36 16 36 H 0.16 2.02 8.06 -52.48 -0.42 1.60 16 37 H 0.20 2.75 7.85 -52.48 -0.41 2.34 16 LS Contribution 295.60 15.07 4.45 4.45 Total: -1.00 -29.73 295.60 -8.04 -37.77 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -5.55 Total: 7.46 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: -1.47 Total: -11.93 kcal Atomic # 7 Polarization: -53.59 SS G_CDS: -0.45 Total: -54.04 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.73 -8.04 -37.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049235259.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.196 kcal (2) G-P(sol) polarization free energy of solvation -29.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds