Wall clock time and date at job start Mon Mar 30 2020 03:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46701 * 2 1 4 4 H 1.09004 * 109.46692 * 175.12033 * 3 2 1 5 5 C 1.50694 * 109.47087 * 55.12418 * 3 2 1 6 6 H 1.08003 * 120.00338 * 239.99357 * 5 3 2 7 7 C 1.37882 * 120.00210 * 59.99960 * 5 3 2 8 8 N 1.31512 * 120.00001 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00160 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47064 * 59.99854 * 9 7 5 11 11 H 1.48499 * 109.47043 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47274 * 299.99960 * 9 7 5 13 13 N 1.46898 * 109.47488 * 295.12102 * 3 2 1 14 14 C 1.46895 * 111.00065 * 273.92665 * 13 3 2 15 15 H 1.09001 * 109.47744 * 37.63008 * 14 13 3 16 16 C 1.52998 * 109.47131 * 277.63104 * 14 13 3 17 17 C 1.53006 * 109.47344 * 157.63241 * 14 13 3 18 18 N 1.46499 * 109.46832 * 294.99974 * 17 14 13 19 19 C 1.36881 * 126.39261 * 269.70710 * 18 17 14 20 20 C 1.34672 * 106.81503 * 179.84304 * 19 18 17 21 21 N 1.34127 * 108.02268 * 0.42713 * 20 19 18 22 22 C 1.30504 * 109.25130 * 359.72958 * 21 20 19 23 23 H 1.09001 * 109.47167 * 55.69082 * 1 2 3 24 24 H 1.08999 * 109.47617 * 295.69340 * 1 2 3 25 25 H 1.09000 * 109.47277 * 175.68870 * 1 2 3 26 26 H 1.08994 * 109.47501 * 119.99636 * 2 1 3 27 27 H 1.09002 * 109.47358 * 240.00367 * 2 1 3 28 28 H 0.96989 * 120.00434 * 180.02562 * 8 7 5 29 29 H 1.00906 * 110.99471 * 37.87585 * 13 3 2 30 30 H 1.09002 * 109.47402 * 300.00202 * 16 14 13 31 31 H 1.09000 * 109.46951 * 59.99811 * 16 14 13 32 32 H 1.08994 * 109.47753 * 180.02562 * 16 14 13 33 33 H 1.08999 * 109.46981 * 54.99776 * 17 14 13 34 34 H 1.09003 * 109.46966 * 174.99756 * 17 14 13 35 35 H 1.07997 * 126.59607 * 359.97438 * 19 18 17 36 36 H 1.08005 * 125.99100 * 180.11526 * 20 19 18 37 37 H 1.08003 * 125.64882 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1264 1.4438 0.0874 5 6 1.4413 2.1869 1.1656 6 1 0.8314 3.0612 0.9923 7 6 1.6725 1.7519 2.4534 8 7 2.4149 0.6872 2.6645 9 14 0.9311 2.6750 3.8983 10 1 -0.5492 2.6739 3.7795 11 1 1.3260 2.0098 5.1659 12 1 1.4266 4.0750 3.8982 13 7 1.6488 2.1003 -1.2539 14 6 2.6345 1.8441 -2.3125 15 1 3.0033 0.8220 -2.2261 16 6 3.8028 2.8215 -2.1689 17 6 1.9754 2.0346 -3.6801 18 7 0.9347 1.0205 -3.8661 19 6 1.0981 -0.2178 -4.4260 20 6 -0.1058 -0.8206 -4.3968 21 7 -0.9825 0.0301 -3.8429 22 6 -0.3663 1.1350 -3.5225 23 1 -0.3633 0.5793 -0.8489 24 1 -0.3634 0.4455 0.9260 25 1 -0.3634 -1.0247 -0.0773 26 1 1.8934 -0.5137 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 2.5772 0.3809 3.5704 29 1 0.7259 1.8108 -1.5415 30 1 3.4341 3.8437 -2.2553 31 1 4.2723 2.6859 -1.1946 32 1 4.5340 2.6318 -2.9545 33 1 1.5289 3.0275 -3.7331 34 1 2.7269 1.9319 -4.4630 35 1 2.0164 -0.6326 -4.8145 36 1 -0.3278 -1.8130 -4.7606 37 1 -0.8213 1.9979 -3.0590 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049235259.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:37 Heat of formation + Delta-G solvation = 39.632451 kcal Electronic energy + Delta-G solvation = -17699.710397 eV Core-core repulsion = 15091.237871 eV Total energy + Delta-G solvation = -2608.472525 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.93087 -38.95021 -36.15246 -33.94958 -32.87049 -30.34076 -30.32125 -28.02597 -27.23131 -25.24802 -22.58213 -22.21412 -21.70444 -20.69486 -18.47970 -18.02717 -17.10443 -16.86883 -16.01982 -15.43506 -15.16009 -14.88557 -14.66099 -14.51836 -14.25275 -13.99547 -13.79169 -13.14051 -12.96101 -12.91924 -12.79010 -12.54584 -12.45097 -12.27910 -11.78854 -11.69661 -11.47850 -11.00921 -10.87968 -10.44628 -10.43358 -9.38907 -8.99967 -8.06597 -6.14905 1.20177 1.43278 1.43990 1.51149 1.98125 2.28884 2.44727 3.22640 3.48905 3.84395 3.92237 4.02670 4.07804 4.28285 4.43733 4.50228 4.52838 4.63677 4.68896 4.73765 4.83506 4.92570 5.00278 5.12956 5.33186 5.38350 5.42642 5.43332 5.58328 5.70025 5.81747 5.89801 6.29862 6.32705 6.63563 6.81785 6.96780 7.20373 7.52892 8.98835 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.029572 B = 0.007608 C = 0.006782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.602747 B = 3679.568557 C = 4127.319993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.131 4.131 3 C 0.228 3.772 4 H 0.002 0.998 5 C -0.500 4.500 6 H 0.054 0.946 7 C 0.013 3.987 8 N -0.922 5.922 9 Si 0.950 3.050 10 H -0.274 1.274 11 H -0.288 1.288 12 H -0.272 1.272 13 N -0.682 5.682 14 C 0.065 3.935 15 H 0.020 0.980 16 C -0.128 4.128 17 C 0.108 3.892 18 N -0.453 5.453 19 C -0.053 4.053 20 C -0.058 4.058 21 N -0.529 5.529 22 C 0.171 3.829 23 H 0.044 0.956 24 H 0.041 0.959 25 H 0.030 0.970 26 H 0.060 0.940 27 H 0.012 0.988 28 H 0.258 0.742 29 H 0.330 0.670 30 H 0.068 0.932 31 H 0.031 0.969 32 H 0.082 0.918 33 H 0.115 0.885 34 H 0.128 0.872 35 H 0.199 0.801 36 H 0.180 0.820 37 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.878 1.581 -13.865 13.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.170 4.170 3 C 0.119 3.881 4 H 0.019 0.981 5 C -0.539 4.539 6 H 0.072 0.928 7 C -0.185 4.185 8 N -0.562 5.562 9 Si 0.776 3.224 10 H -0.199 1.199 11 H -0.214 1.214 12 H -0.198 1.198 13 N -0.315 5.315 14 C -0.046 4.046 15 H 0.038 0.962 16 C -0.186 4.186 17 C -0.014 4.014 18 N -0.135 5.135 19 C -0.186 4.186 20 C -0.205 4.205 21 N -0.248 5.248 22 C -0.112 4.112 23 H 0.063 0.937 24 H 0.060 0.940 25 H 0.049 0.951 26 H 0.078 0.922 27 H 0.030 0.970 28 H 0.067 0.933 29 H 0.150 0.850 30 H 0.087 0.913 31 H 0.051 0.949 32 H 0.101 0.899 33 H 0.133 0.867 34 H 0.146 0.854 35 H 0.216 0.784 36 H 0.197 0.803 37 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 0.498 2.049 -13.413 13.577 hybrid contribution 0.410 -0.717 0.990 1.289 sum 0.908 1.332 -12.423 12.527 Atomic orbital electron populations 1.21352 0.96231 0.98569 1.00494 1.21891 0.95993 1.00609 0.98556 1.18875 0.93650 0.88682 0.86905 0.98058 1.21261 1.30433 1.11385 0.90781 0.92788 1.25600 0.95925 0.95865 1.01132 1.69998 1.39953 1.25055 1.21215 0.85738 0.78953 0.78914 0.78793 1.19893 1.21411 1.19773 1.60965 1.04731 1.62409 1.03391 1.21922 0.94373 0.97473 0.90858 0.96173 1.21658 0.96256 0.99415 1.01268 1.22341 0.90174 0.91426 0.97489 1.45739 1.09604 1.14103 1.44076 1.23168 1.02074 0.86923 1.06462 1.22644 0.90162 1.01232 1.06476 1.70234 1.34487 1.02526 1.17580 1.25192 0.81625 1.00092 1.04255 0.93708 0.94021 0.95063 0.92167 0.96964 0.93258 0.84950 0.91269 0.94949 0.89881 0.86695 0.85429 0.78432 0.80290 0.77220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.92 9.38 71.98 0.68 -4.24 16 2 C -0.13 -6.34 5.50 30.60 0.17 -6.17 16 3 C 0.23 11.13 2.14 44.17 0.09 11.22 16 4 H 0.00 0.08 6.92 -2.38 -0.02 0.07 16 5 C -0.50 -26.93 7.44 25.60 0.19 -26.74 16 6 H 0.05 2.93 7.81 -2.91 -0.02 2.90 16 7 C 0.01 0.71 5.27 84.66 0.45 1.15 16 8 N -0.92 -52.94 11.37 21.45 0.24 -52.70 16 9 Si 0.95 43.86 29.54 68.60 2.03 45.89 16 10 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 11 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 12 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 13 N -0.68 -26.54 6.04 -473.31 -2.86 -29.39 16 14 C 0.06 1.96 2.70 44.92 0.12 2.08 16 15 H 0.02 0.70 7.18 -2.39 -0.02 0.69 16 16 C -0.13 -3.49 9.37 71.98 0.67 -2.82 16 17 C 0.11 2.30 5.73 86.38 0.49 2.79 16 18 N -0.45 -11.58 2.62 -529.05 -1.38 -12.97 16 19 C -0.05 -1.29 11.58 83.09 0.96 -0.33 16 20 C -0.06 -1.63 11.87 83.52 0.99 -0.64 16 21 N -0.53 -17.44 11.25 -200.30 -2.25 -19.69 16 22 C 0.17 5.01 10.08 180.26 1.82 6.82 16 23 H 0.04 1.87 5.58 -2.39 -0.01 1.86 16 24 H 0.04 2.03 7.23 -2.39 -0.02 2.01 16 25 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.06 3.32 6.21 -2.39 -0.01 3.30 16 27 H 0.01 0.55 7.43 -2.39 -0.02 0.53 16 28 H 0.26 14.31 8.31 -92.72 -0.77 13.54 16 29 H 0.33 12.44 3.82 -89.69 -0.34 12.09 16 30 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.03 1.10 7.25 -2.39 -0.02 1.09 16 32 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.13 1.85 8.14 -2.39 -0.02 1.84 16 35 H 0.20 3.45 8.06 -2.91 -0.02 3.43 16 36 H 0.18 4.17 8.06 -2.91 -0.02 4.14 16 37 H 0.21 5.47 7.85 -2.91 -0.02 5.44 16 Total: -1.00 -64.81 295.60 3.11 -61.69 By element: Atomic # 1 Polarization: 23.33 SS G_CDS: 0.70 Total: 24.03 kcal Atomic # 6 Polarization: -23.50 SS G_CDS: 6.64 Total: -16.87 kcal Atomic # 7 Polarization: -108.50 SS G_CDS: -6.25 Total: -114.75 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -64.81 3.11 -61.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049235259.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.326 kcal (2) G-P(sol) polarization free energy of solvation -64.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds