Wall clock time and date at job start Mon Mar 30 2020 04:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.46869 * 2 1 4 4 C 1.52995 * 109.47240 * 240.00076 * 2 1 3 5 5 N 1.46500 * 109.47215 * 174.99906 * 4 2 1 6 6 C 1.36887 * 126.39622 * 269.71352 * 5 4 2 7 7 C 1.34671 * 106.81449 * 179.84558 * 6 5 4 8 8 N 1.34130 * 108.02062 * 0.41947 * 7 6 5 9 9 C 1.30496 * 109.25767 * 359.73609 * 8 7 6 10 10 N 1.46905 * 109.47191 * 119.99949 * 2 1 3 11 11 C 1.46902 * 110.99800 * 274.99934 * 10 2 1 12 12 C 1.53006 * 109.46626 * 179.97438 * 11 10 2 13 13 C 1.52999 * 109.46626 * 179.97438 * 12 11 10 14 14 C 1.50706 * 109.46957 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99816 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00340 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99773 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00296 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47086 * 59.99480 * 18 16 14 20 20 H 1.48494 * 109.47288 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46879 * 299.99424 * 18 16 14 22 22 H 1.08996 * 109.47051 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.46808 * 299.99830 * 1 2 3 24 24 H 1.09001 * 109.47129 * 59.99933 * 1 2 3 25 25 H 1.09001 * 109.47077 * 294.99883 * 4 2 1 26 26 H 1.09003 * 109.46883 * 55.00222 * 4 2 1 27 27 H 1.08000 * 126.59187 * 359.97438 * 6 5 4 28 28 H 1.08003 * 125.98976 * 180.12401 * 7 6 5 29 29 H 1.07993 * 125.64954 * 180.02562 * 9 8 7 30 30 H 1.00898 * 110.99743 * 151.04984 * 10 2 1 31 31 H 1.09000 * 109.47263 * 60.00269 * 11 10 2 32 32 H 1.09001 * 109.47582 * 299.99548 * 11 10 2 33 33 H 1.08993 * 109.46955 * 300.00347 * 12 11 10 34 34 H 1.09000 * 109.47050 * 60.00176 * 12 11 10 35 35 H 1.08993 * 109.47839 * 299.99931 * 13 12 11 36 36 H 1.09000 * 109.47160 * 60.00369 * 13 12 11 37 37 H 0.97000 * 120.00540 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5001 -0.6178 -1.3109 6 6 4.2190 0.3712 -1.9264 7 6 5.5206 0.0810 -1.7388 8 7 5.5944 -1.0592 -1.0361 9 6 4.3880 -1.4835 -0.7764 10 7 2.0197 -0.6925 1.1995 11 6 2.0825 0.2226 2.3469 12 6 2.5951 -0.5332 3.5745 13 6 2.6611 0.4201 4.7694 14 6 3.1666 -0.3242 5.9784 15 1 3.4162 -1.3722 5.9020 16 6 3.3104 0.3327 7.1821 17 7 3.0069 1.6090 7.2750 18 14 3.9377 -0.5896 8.6805 19 1 5.2939 -1.1256 8.3999 20 1 4.0016 0.3355 9.8403 21 1 3.0165 -1.7120 8.9922 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.7517 -1.7715 -1.2055 26 1 1.6054 -0.2616 -2.1369 27 1 3.8192 1.2220 -2.4581 28 1 6.3583 0.6617 -2.0960 29 1 4.1408 -2.3785 -0.2248 30 1 2.9174 -1.1204 1.0287 31 1 1.0871 0.6163 2.5526 32 1 2.7589 1.0462 2.1183 33 1 1.9184 -1.3565 3.8029 34 1 3.5904 -0.9273 3.3691 35 1 3.3380 1.2431 4.5407 36 1 1.6660 0.8145 4.9749 37 1 3.1084 2.0713 8.1216 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049578554.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:19:32 Heat of formation + Delta-G solvation = 45.445417 kcal Electronic energy + Delta-G solvation = -16482.261249 eV Core-core repulsion = 13874.040793 eV Total energy + Delta-G solvation = -2608.220456 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.14836 -37.65926 -34.60442 -33.11890 -31.76381 -29.67963 -29.50665 -26.72086 -25.85563 -22.70765 -21.57142 -21.21026 -20.67500 -20.01653 -17.55489 -16.41192 -16.20971 -15.46536 -14.72402 -14.45720 -14.39565 -14.08992 -13.74274 -13.55378 -13.01041 -12.64386 -12.50885 -12.22235 -11.97568 -11.83461 -11.46779 -11.14501 -10.78688 -10.56917 -10.51888 -10.02933 -9.70586 -9.70176 -9.32326 -9.05576 -8.62127 -8.34489 -8.31591 -5.97437 -3.99634 1.96290 2.65078 3.13659 3.36102 3.39880 3.42900 4.06135 4.47185 4.48912 4.64386 4.69069 4.71844 4.88559 5.19345 5.33057 5.37375 5.38393 5.54694 5.61756 5.72885 5.77335 5.87101 6.09880 6.14977 6.29968 6.64943 6.67577 6.72066 7.07557 7.11871 7.20964 7.45910 7.69190 7.83753 8.02055 8.02313 8.45532 9.07065 9.64320 11.14063 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.027918 B = 0.004672 C = 0.004245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.689394 B = 5992.163964 C = 6594.776577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.065 3.935 3 H 0.049 0.951 4 C 0.100 3.900 5 N -0.460 5.460 6 C -0.060 4.060 7 C -0.030 4.030 8 N -0.493 5.493 9 C 0.181 3.819 10 N -0.685 5.685 11 C 0.061 3.939 12 C -0.107 4.107 13 C 0.023 3.977 14 C -0.519 4.519 15 H 0.055 0.945 16 C 0.056 3.944 17 N -0.897 5.897 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 H 0.065 0.935 23 H 0.065 0.935 24 H 0.055 0.945 25 H 0.103 0.897 26 H 0.096 0.904 27 H 0.171 0.829 28 H 0.168 0.832 29 H 0.206 0.794 30 H 0.336 0.664 31 H 0.068 0.932 32 H 0.023 0.977 33 H 0.056 0.944 34 H 0.045 0.955 35 H 0.013 0.987 36 H 0.015 0.985 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.549 -2.762 -19.892 20.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.046 4.046 3 H 0.067 0.933 4 C -0.023 4.023 5 N -0.143 5.143 6 C -0.193 4.193 7 C -0.178 4.178 8 N -0.211 5.211 9 C -0.101 4.101 10 N -0.319 5.319 11 C -0.068 4.068 12 C -0.145 4.145 13 C -0.015 4.015 14 C -0.558 4.558 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.537 5.537 18 Si 0.720 3.280 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.202 1.202 22 H 0.084 0.916 23 H 0.084 0.916 24 H 0.074 0.926 25 H 0.121 0.879 26 H 0.115 0.885 27 H 0.189 0.811 28 H 0.185 0.815 29 H 0.222 0.778 30 H 0.155 0.845 31 H 0.087 0.913 32 H 0.042 0.958 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.031 0.969 36 H 0.034 0.966 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.594 -3.256 -19.356 19.955 hybrid contribution 0.347 0.649 0.445 0.860 sum -3.247 -2.607 -18.912 19.365 Atomic orbital electron populations 1.21733 0.93174 1.02794 1.01892 1.21916 0.96814 0.96441 0.89388 0.93335 1.22239 0.76434 1.03929 0.99671 1.45677 1.07622 1.20104 1.40911 1.22725 0.92964 0.97078 1.06485 1.22317 0.95458 0.96578 1.03450 1.70313 1.22241 1.12115 1.16439 1.25082 0.84046 0.98343 1.02613 1.60787 1.33276 1.33879 1.03910 1.22173 1.00502 0.93631 0.90462 1.21623 0.99314 0.99477 0.94047 1.19050 0.97057 0.94199 0.91145 1.21211 1.43633 0.96389 0.94530 0.92700 1.25024 0.95589 0.94881 0.98966 1.69956 1.48898 1.08999 1.25817 0.86647 0.79485 0.79593 0.82226 1.20217 1.21303 1.20211 0.91589 0.91615 0.92617 0.87881 0.88525 0.81142 0.81502 0.77777 0.84489 0.91306 0.95827 0.92483 0.93652 0.96868 0.96615 0.92986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 9.42 37.16 0.35 -0.93 16 2 C 0.07 0.70 2.88 -67.71 -0.19 0.50 16 3 H 0.05 0.59 7.80 -51.93 -0.40 0.18 16 4 C 0.10 0.82 5.71 -4.04 -0.02 0.80 16 5 N -0.46 -4.86 2.62 -118.58 -0.31 -5.17 16 6 C -0.06 -0.63 11.58 -16.56 -0.19 -0.82 16 7 C -0.03 -0.37 11.87 -17.81 -0.21 -0.59 16 8 N -0.49 -7.23 11.25 -14.67 -0.16 -7.40 16 9 C 0.18 2.22 10.77 -90.38 -0.97 1.25 16 10 N -0.69 -9.52 6.31 -106.72 -0.67 -10.20 16 11 C 0.06 1.06 5.48 -3.82 -0.02 1.04 16 12 C -0.11 -2.26 5.41 -26.73 -0.14 -2.40 16 13 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 14 C -0.52 -15.08 9.11 -34.44 -0.31 -15.39 16 15 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.90 -27.46 13.29 55.43 0.74 -26.73 16 18 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 23 H 0.06 0.72 7.45 -51.93 -0.39 0.33 16 24 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.17 1.29 8.06 -52.49 -0.42 0.87 16 28 H 0.17 1.69 8.06 -52.48 -0.42 1.27 16 29 H 0.21 2.02 7.81 -52.49 -0.41 1.61 16 30 H 0.34 4.65 5.98 -39.29 -0.23 4.42 16 31 H 0.07 1.20 7.44 -51.93 -0.39 0.81 16 32 H 0.02 0.43 8.06 -51.93 -0.42 0.02 16 33 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 308.82 15.07 4.65 4.65 Total: -1.00 -33.04 308.82 -8.75 -41.79 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -6.01 Total: 0.51 kcal Atomic # 6 Polarization: -12.56 SS G_CDS: -1.96 Total: -14.52 kcal Atomic # 7 Polarization: -49.08 SS G_CDS: -0.41 Total: -49.49 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -33.04 -8.75 -41.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049578554.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.238 kcal (2) G-P(sol) polarization free energy of solvation -33.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds