Wall clock time and date at job start Mon Mar 30 2020 04:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.46869 * 2 1 4 4 C 1.52995 * 109.47240 * 240.00076 * 2 1 3 5 5 N 1.46500 * 109.47215 * 174.99906 * 4 2 1 6 6 C 1.36887 * 126.39622 * 269.71352 * 5 4 2 7 7 C 1.34671 * 106.81449 * 179.84558 * 6 5 4 8 8 N 1.34130 * 108.02062 * 0.41947 * 7 6 5 9 9 C 1.30496 * 109.25767 * 359.73609 * 8 7 6 10 10 N 1.46905 * 109.47191 * 119.99949 * 2 1 3 11 11 C 1.46902 * 110.99800 * 274.99934 * 10 2 1 12 12 C 1.53006 * 109.46626 * 179.97438 * 11 10 2 13 13 C 1.52999 * 109.46626 * 179.97438 * 12 11 10 14 14 C 1.50706 * 109.46957 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99816 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00340 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99773 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00296 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47086 * 59.99480 * 18 16 14 20 20 H 1.48494 * 109.47288 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46879 * 299.99424 * 18 16 14 22 22 H 1.08996 * 109.47051 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.46808 * 299.99830 * 1 2 3 24 24 H 1.09001 * 109.47129 * 59.99933 * 1 2 3 25 25 H 1.09001 * 109.47077 * 294.99883 * 4 2 1 26 26 H 1.09003 * 109.46883 * 55.00222 * 4 2 1 27 27 H 1.08000 * 126.59187 * 359.97438 * 6 5 4 28 28 H 1.08003 * 125.98976 * 180.12401 * 7 6 5 29 29 H 1.07993 * 125.64954 * 180.02562 * 9 8 7 30 30 H 1.00898 * 110.99743 * 151.04984 * 10 2 1 31 31 H 1.09000 * 109.47263 * 60.00269 * 11 10 2 32 32 H 1.09001 * 109.47582 * 299.99548 * 11 10 2 33 33 H 1.08993 * 109.46955 * 300.00347 * 12 11 10 34 34 H 1.09000 * 109.47050 * 60.00176 * 12 11 10 35 35 H 1.08993 * 109.47839 * 299.99931 * 13 12 11 36 36 H 1.09000 * 109.47160 * 60.00369 * 13 12 11 37 37 H 0.97000 * 120.00540 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5001 -0.6178 -1.3109 6 6 4.2190 0.3712 -1.9264 7 6 5.5206 0.0810 -1.7388 8 7 5.5944 -1.0592 -1.0361 9 6 4.3880 -1.4835 -0.7764 10 7 2.0197 -0.6925 1.1995 11 6 2.0825 0.2226 2.3469 12 6 2.5951 -0.5332 3.5745 13 6 2.6611 0.4201 4.7694 14 6 3.1666 -0.3242 5.9784 15 1 3.4162 -1.3722 5.9020 16 6 3.3104 0.3327 7.1821 17 7 3.0069 1.6090 7.2750 18 14 3.9377 -0.5896 8.6805 19 1 5.2939 -1.1256 8.3999 20 1 4.0016 0.3355 9.8403 21 1 3.0165 -1.7120 8.9922 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.7517 -1.7715 -1.2055 26 1 1.6054 -0.2616 -2.1369 27 1 3.8192 1.2220 -2.4581 28 1 6.3583 0.6617 -2.0960 29 1 4.1408 -2.3785 -0.2248 30 1 2.9174 -1.1204 1.0287 31 1 1.0871 0.6163 2.5526 32 1 2.7589 1.0462 2.1183 33 1 1.9184 -1.3565 3.8029 34 1 3.5904 -0.9273 3.3691 35 1 3.3380 1.2431 4.5407 36 1 1.6660 0.8145 4.9749 37 1 3.1084 2.0713 8.1216 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049578554.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:19:31 Heat of formation + Delta-G solvation = 24.615709 kcal Electronic energy + Delta-G solvation = -16483.164493 eV Core-core repulsion = 13874.040793 eV Total energy + Delta-G solvation = -2609.123700 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.99843 -38.72252 -36.20248 -34.69724 -33.23827 -31.07221 -30.38926 -27.87951 -27.29058 -24.48312 -22.46374 -22.23835 -21.91673 -21.32605 -18.53008 -18.33332 -17.36428 -16.63402 -16.34207 -15.99737 -15.37904 -15.07915 -14.89675 -14.53072 -14.35138 -14.03944 -13.65886 -13.50549 -13.18496 -13.02970 -12.80728 -12.73163 -12.45709 -12.23837 -12.14974 -11.56125 -11.42802 -11.15972 -10.94386 -10.57194 -10.54658 -9.57644 -9.41183 -8.22013 -6.33547 1.12269 1.39010 1.42586 1.50471 1.89444 2.21566 2.39874 3.05951 3.11080 3.68443 3.87688 3.92702 3.94381 4.17001 4.18175 4.30825 4.42104 4.58853 4.63773 4.66324 4.77893 4.81210 4.90268 5.00013 5.09832 5.18269 5.31975 5.38536 5.48274 5.69406 5.81771 5.82210 5.95059 6.23449 6.26326 6.31044 6.82650 7.14334 7.35907 8.89885 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.027918 B = 0.004672 C = 0.004245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.689394 B = 5992.163964 C = 6594.776577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.064 3.936 3 H 0.036 0.964 4 C 0.104 3.896 5 N -0.458 5.458 6 C -0.049 4.049 7 C -0.062 4.062 8 N -0.538 5.538 9 C 0.169 3.831 10 N -0.683 5.683 11 C 0.076 3.924 12 C -0.092 4.092 13 C 0.026 3.974 14 C -0.546 4.546 15 H 0.059 0.941 16 C 0.000 4.000 17 N -0.934 5.934 18 Si 0.966 3.034 19 H -0.268 1.268 20 H -0.281 1.281 21 H -0.265 1.265 22 H 0.071 0.929 23 H 0.044 0.956 24 H 0.084 0.916 25 H 0.119 0.881 26 H 0.130 0.870 27 H 0.204 0.796 28 H 0.178 0.822 29 H 0.220 0.780 30 H 0.337 0.663 31 H 0.068 0.932 32 H 0.009 0.991 33 H 0.058 0.942 34 H 0.042 0.958 35 H -0.015 1.015 36 H -0.006 1.006 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.361 -3.679 -20.900 21.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.046 4.046 3 H 0.054 0.946 4 C -0.017 4.017 5 N -0.140 5.140 6 C -0.183 4.183 7 C -0.209 4.209 8 N -0.257 5.257 9 C -0.114 4.114 10 N -0.316 5.316 11 C -0.053 4.053 12 C -0.130 4.130 13 C -0.011 4.011 14 C -0.584 4.584 15 H 0.078 0.922 16 C -0.198 4.198 17 N -0.574 5.574 18 Si 0.790 3.210 19 H -0.193 1.193 20 H -0.206 1.206 21 H -0.189 1.189 22 H 0.090 0.910 23 H 0.063 0.937 24 H 0.103 0.897 25 H 0.137 0.863 26 H 0.148 0.852 27 H 0.220 0.780 28 H 0.195 0.805 29 H 0.237 0.763 30 H 0.156 0.844 31 H 0.086 0.914 32 H 0.028 0.972 33 H 0.077 0.923 34 H 0.061 0.939 35 H 0.003 0.997 36 H 0.012 0.988 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.422 -4.183 -20.389 21.278 hybrid contribution 0.575 0.980 0.718 1.344 sum -3.847 -3.203 -19.671 20.298 Atomic orbital electron populations 1.21715 0.91800 1.03324 1.02327 1.22032 0.97781 0.95781 0.89002 0.94574 1.22404 0.74933 1.04960 0.99426 1.45825 1.08448 1.19569 1.40180 1.23223 0.92410 0.97325 1.05320 1.22698 0.97081 0.96748 1.04405 1.70246 1.23986 1.13571 1.17920 1.25389 0.83992 0.99127 1.02870 1.60732 1.33327 1.33183 1.04333 1.21822 0.99724 0.93205 0.90571 1.21365 0.99477 0.98448 0.93685 1.18951 0.94823 0.94296 0.93052 1.21662 1.44025 0.96899 0.95771 0.92234 1.26001 0.95551 0.95780 1.02479 1.70090 1.49757 1.10716 1.26867 0.85481 0.79187 0.78413 0.77872 1.19315 1.20647 1.18929 0.90986 0.93719 0.89697 0.86305 0.85161 0.77956 0.80475 0.76325 0.84396 0.91385 0.97231 0.92286 0.93870 0.99654 0.98777 0.92714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.12 9.42 71.98 0.68 -1.45 16 2 C 0.06 1.23 2.88 44.91 0.13 1.36 16 3 H 0.04 0.81 7.80 -2.38 -0.02 0.79 16 4 C 0.10 1.35 5.71 86.38 0.49 1.84 16 5 N -0.46 -8.65 2.62 -529.07 -1.39 -10.03 16 6 C -0.05 -0.95 11.58 83.09 0.96 0.02 16 7 C -0.06 -1.52 11.87 83.52 0.99 -0.53 16 8 N -0.54 -15.78 11.25 -200.31 -2.25 -18.03 16 9 C 0.17 3.97 10.77 180.26 1.94 5.91 16 10 N -0.68 -18.08 6.31 -491.54 -3.10 -21.18 16 11 C 0.08 2.66 5.48 86.31 0.47 3.13 16 12 C -0.09 -3.93 5.41 30.60 0.17 -3.77 16 13 C 0.03 1.45 4.97 29.85 0.15 1.59 16 14 C -0.55 -32.12 9.11 25.60 0.23 -31.89 16 15 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 16 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 17 N -0.93 -58.12 13.29 21.45 0.28 -57.84 16 18 Si 0.97 45.22 29.54 68.60 2.03 47.25 16 19 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 20 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 21 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 22 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 23 H 0.04 0.91 7.45 -2.39 -0.02 0.89 16 24 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.13 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.20 2.37 8.06 -2.91 -0.02 2.35 16 28 H 0.18 3.59 8.06 -2.91 -0.02 3.57 16 29 H 0.22 4.12 7.81 -2.91 -0.02 4.10 16 30 H 0.34 8.91 5.98 -89.70 -0.54 8.37 16 31 H 0.07 2.39 7.44 -2.39 -0.02 2.37 16 32 H 0.01 0.36 8.06 -2.39 -0.02 0.34 16 33 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 34 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 35 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 36 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 37 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -72.72 308.82 2.74 -69.98 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: 0.49 Total: 13.19 kcal Atomic # 6 Polarization: -30.01 SS G_CDS: 6.68 Total: -23.34 kcal Atomic # 7 Polarization: -100.63 SS G_CDS: -6.46 Total: -107.08 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -72.72 2.74 -69.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049578554.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.600 kcal (2) G-P(sol) polarization free energy of solvation -72.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds