Wall clock time and date at job start Mon Mar 30 2020 03:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52993 * 109.46996 * 2 1 4 4 N 1.46902 * 109.46940 * 180.02562 * 3 2 1 5 5 C 1.46900 * 111.00192 * 180.02562 * 4 3 2 6 6 C 1.50698 * 109.47189 * 180.02562 * 5 4 3 7 7 N 1.30503 * 125.64757 * 270.16854 * 6 5 4 8 8 C 1.34132 * 109.25579 * 180.29064 * 7 6 5 9 9 C 1.34669 * 108.01768 * 359.73289 * 8 7 6 10 10 N 1.35042 * 125.65478 * 89.99961 * 6 5 4 11 11 C 1.46500 * 126.39313 * 359.97438 * 10 6 5 12 12 C 1.52997 * 109.47473 * 84.71557 * 11 10 6 13 13 C 1.50701 * 109.47212 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47432 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.46890 * 120.00210 * 17 15 13 20 20 H 1.48501 * 109.47062 * 240.00257 * 17 15 13 21 21 H 1.08996 * 109.47213 * 300.00270 * 1 2 3 22 22 H 1.09006 * 109.46815 * 60.00161 * 1 2 3 23 23 H 1.08999 * 109.47322 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47009 * 240.00225 * 2 1 3 25 25 H 1.08995 * 109.47097 * 120.00247 * 2 1 3 26 26 H 1.08998 * 109.47058 * 60.00255 * 3 2 1 27 27 H 1.09005 * 109.47473 * 300.00077 * 3 2 1 28 28 H 1.00907 * 110.99689 * 303.94970 * 4 3 2 29 29 H 1.08998 * 109.47218 * 59.99679 * 5 4 3 30 30 H 1.08999 * 109.46966 * 300.00003 * 5 4 3 31 31 H 1.07998 * 125.98893 * 179.72468 * 8 7 6 32 32 H 1.07997 * 126.59117 * 179.97438 * 9 8 7 33 33 H 1.09002 * 109.47129 * 324.71300 * 11 10 6 34 34 H 1.08998 * 109.46845 * 204.72107 * 11 10 6 35 35 H 1.09002 * 109.47153 * 59.99757 * 12 11 10 36 36 H 1.09001 * 109.46832 * 299.99948 * 12 11 10 37 37 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5090 1.4424 -0.0006 5 6 4.0355 2.8138 0.0000 6 6 5.5420 2.7736 -0.0013 7 7 6.3031 2.7494 1.0585 8 6 7.5893 2.7228 0.6789 9 6 7.6264 2.7249 -0.6673 10 7 6.3279 2.7534 -1.0993 11 6 5.8754 2.7660 -2.4926 12 6 5.6293 4.2095 -2.9359 13 6 5.1644 4.2224 -4.3694 14 1 5.0549 3.2939 -4.9100 15 6 4.8778 5.4196 -4.9904 16 7 5.0107 6.5502 -4.3319 17 14 4.3008 5.4355 -6.7669 18 1 4.2337 4.0429 -7.2782 19 1 2.9539 6.0562 -6.8444 20 1 5.2555 6.2201 -7.5904 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 1.6767 1.9562 0.8900 27 1 1.6767 1.9564 -0.8900 28 1 3.8709 0.9162 0.7806 29 1 3.6864 3.3367 0.8904 30 1 3.6857 3.3377 -0.8895 31 1 8.4451 2.7033 1.3374 32 1 8.5108 2.7078 -1.2869 33 1 4.9500 2.1965 -2.5791 34 1 6.6393 2.3162 -3.1267 35 1 6.5547 4.7789 -2.8493 36 1 4.8654 4.6591 -2.3017 37 1 4.8094 7.3925 -4.7690 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051005311.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:15 Heat of formation + Delta-G solvation = 37.379915 kcal Electronic energy + Delta-G solvation = -16597.238914 eV Core-core repulsion = 13988.668711 eV Total energy + Delta-G solvation = -2608.570203 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.53492 -36.72169 -34.63081 -33.12451 -32.59520 -29.66026 -29.21179 -26.24696 -24.97250 -23.56697 -21.63437 -21.38573 -20.76125 -19.03837 -16.93820 -16.18204 -15.68780 -15.23338 -14.75314 -14.53508 -14.14562 -13.90726 -13.63426 -13.15000 -12.79656 -12.77659 -12.35189 -12.04824 -11.92612 -11.52964 -11.46814 -11.08467 -11.00857 -10.81423 -10.75706 -10.27850 -10.09141 -9.54920 -9.34082 -8.80034 -8.53027 -8.40377 -7.87506 -6.16610 -4.22129 2.58616 3.22110 3.29799 3.33075 3.46723 3.55378 4.33452 4.36913 4.87737 4.95956 5.03443 5.19716 5.27312 5.35165 5.49273 5.54595 5.63231 5.71554 5.74156 5.79152 5.94704 5.99461 6.14964 6.16635 6.20993 6.23094 6.46482 6.88577 7.03102 7.23293 7.40819 7.44283 7.50805 7.70313 7.85737 8.15676 8.59299 8.83860 9.43565 10.94476 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.015165 B = 0.006992 C = 0.005101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.897732 B = 4003.875011 C = 5488.074303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C 0.058 3.942 4 N -0.685 5.685 5 C 0.145 3.855 6 C 0.205 3.795 7 N -0.503 5.503 8 C -0.045 4.045 9 C -0.052 4.052 10 N -0.427 5.427 11 C 0.101 3.899 12 C 0.014 3.986 13 C -0.527 4.527 14 H 0.060 0.940 15 C 0.062 3.938 16 N -0.889 5.889 17 Si 0.896 3.104 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.283 1.283 21 H 0.052 0.948 22 H 0.056 0.944 23 H 0.054 0.946 24 H 0.071 0.929 25 H 0.058 0.942 26 H 0.030 0.970 27 H 0.076 0.924 28 H 0.343 0.657 29 H 0.057 0.943 30 H 0.096 0.904 31 H 0.162 0.838 32 H 0.168 0.832 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.022 0.978 36 H 0.023 0.977 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.490 -10.014 7.410 12.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.072 4.072 4 N -0.317 5.317 5 C 0.014 3.986 6 C -0.058 4.058 7 N -0.223 5.223 8 C -0.194 4.194 9 C -0.188 4.188 10 N -0.106 5.106 11 C -0.020 4.020 12 C -0.023 4.023 13 C -0.566 4.566 14 H 0.078 0.922 15 C -0.141 4.141 16 N -0.528 5.528 17 Si 0.724 3.276 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.209 1.209 21 H 0.071 0.929 22 H 0.075 0.925 23 H 0.073 0.927 24 H 0.089 0.911 25 H 0.077 0.923 26 H 0.048 0.952 27 H 0.095 0.905 28 H 0.161 0.839 29 H 0.075 0.925 30 H 0.114 0.886 31 H 0.180 0.820 32 H 0.185 0.815 33 H 0.106 0.894 34 H 0.097 0.903 35 H 0.040 0.960 36 H 0.041 0.959 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.814 -9.886 7.332 12.885 hybrid contribution 0.050 0.513 -0.956 1.086 sum -3.765 -9.373 6.376 11.944 Atomic orbital electron populations 1.21729 0.95634 1.01580 1.01909 1.21486 0.95475 0.96462 1.02518 1.22021 0.87184 0.97030 1.00924 1.60465 1.07337 1.13531 1.50414 1.20155 0.85297 0.90335 1.02763 1.22729 0.94625 1.06621 0.81844 1.70107 1.02289 1.21073 1.28827 1.22086 0.94584 1.10018 0.92723 1.22686 0.87717 1.11786 0.96622 1.45709 1.05874 1.50186 1.08801 1.22412 1.00522 1.02978 0.76049 1.19431 0.97915 0.88206 0.96771 1.21034 1.46032 0.93018 0.96475 0.92166 1.25001 0.95252 0.95495 0.98351 1.69980 1.48204 0.97669 1.36903 0.86465 0.78450 0.78256 0.84441 1.19566 1.20840 1.20862 0.92903 0.92458 0.92709 0.91066 0.92319 0.95221 0.90530 0.83909 0.92533 0.88571 0.82037 0.81494 0.89433 0.90288 0.95964 0.95916 0.92746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.91 37.16 0.37 -0.97 16 2 C -0.12 -1.25 6.19 -26.73 -0.17 -1.41 16 3 C 0.06 0.69 5.69 -3.83 -0.02 0.67 16 4 N -0.69 -9.79 6.49 -115.06 -0.75 -10.53 16 5 C 0.14 2.38 5.84 -4.98 -0.03 2.35 16 6 C 0.20 3.86 7.42 -155.41 -1.15 2.71 16 7 N -0.50 -9.64 11.25 -10.82 -0.12 -9.76 16 8 C -0.04 -0.78 11.87 -17.81 -0.21 -0.99 16 9 C -0.05 -0.91 11.58 -16.56 -0.19 -1.10 16 10 N -0.43 -8.19 2.75 -113.91 -0.31 -8.50 16 11 C 0.10 2.03 5.61 -4.04 -0.02 2.01 16 12 C 0.01 0.36 5.30 -27.88 -0.15 0.21 16 13 C -0.53 -14.08 9.11 -34.44 -0.31 -14.39 16 14 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 15 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -25.91 13.29 55.43 0.74 -25.18 16 17 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 18 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 21 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 22 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.34 4.73 8.72 -39.29 -0.34 4.39 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.10 1.71 7.33 -51.93 -0.38 1.33 16 31 H 0.16 2.27 8.06 -52.49 -0.42 1.84 16 32 H 0.17 2.45 8.06 -52.49 -0.42 2.02 16 33 H 0.09 1.72 7.94 -51.93 -0.41 1.31 16 34 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 35 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.02 0.60 7.63 -51.93 -0.40 0.21 16 37 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 313.82 15.07 4.73 4.73 Total: -1.00 -29.94 313.82 -8.87 -38.81 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -6.15 Total: 3.96 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: -1.98 Total: -9.31 kcal Atomic # 7 Polarization: -53.53 SS G_CDS: -0.45 Total: -53.97 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.94 -8.87 -38.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051005311.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.193 kcal (2) G-P(sol) polarization free energy of solvation -29.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds