Wall clock time and date at job start Mon Mar 30 2020 03:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52993 * 109.46996 * 2 1 4 4 N 1.46902 * 109.46940 * 180.02562 * 3 2 1 5 5 C 1.46900 * 111.00192 * 180.02562 * 4 3 2 6 6 C 1.50698 * 109.47189 * 180.02562 * 5 4 3 7 7 N 1.30503 * 125.64757 * 270.16854 * 6 5 4 8 8 C 1.34132 * 109.25579 * 180.29064 * 7 6 5 9 9 C 1.34669 * 108.01768 * 359.73289 * 8 7 6 10 10 N 1.35042 * 125.65478 * 89.99961 * 6 5 4 11 11 C 1.46500 * 126.39313 * 359.97438 * 10 6 5 12 12 C 1.52997 * 109.47473 * 84.71557 * 11 10 6 13 13 C 1.50701 * 109.47212 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47432 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.46890 * 120.00210 * 17 15 13 20 20 H 1.48501 * 109.47062 * 240.00257 * 17 15 13 21 21 H 1.08996 * 109.47213 * 300.00270 * 1 2 3 22 22 H 1.09006 * 109.46815 * 60.00161 * 1 2 3 23 23 H 1.08999 * 109.47322 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47009 * 240.00225 * 2 1 3 25 25 H 1.08995 * 109.47097 * 120.00247 * 2 1 3 26 26 H 1.08998 * 109.47058 * 60.00255 * 3 2 1 27 27 H 1.09005 * 109.47473 * 300.00077 * 3 2 1 28 28 H 1.00907 * 110.99689 * 303.94970 * 4 3 2 29 29 H 1.08998 * 109.47218 * 59.99679 * 5 4 3 30 30 H 1.08999 * 109.46966 * 300.00003 * 5 4 3 31 31 H 1.07998 * 125.98893 * 179.72468 * 8 7 6 32 32 H 1.07997 * 126.59117 * 179.97438 * 9 8 7 33 33 H 1.09002 * 109.47129 * 324.71300 * 11 10 6 34 34 H 1.08998 * 109.46845 * 204.72107 * 11 10 6 35 35 H 1.09002 * 109.47153 * 59.99757 * 12 11 10 36 36 H 1.09001 * 109.46832 * 299.99948 * 12 11 10 37 37 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5090 1.4424 -0.0006 5 6 4.0355 2.8138 0.0000 6 6 5.5420 2.7736 -0.0013 7 7 6.3031 2.7494 1.0585 8 6 7.5893 2.7228 0.6789 9 6 7.6264 2.7249 -0.6673 10 7 6.3279 2.7534 -1.0993 11 6 5.8754 2.7660 -2.4926 12 6 5.6293 4.2095 -2.9359 13 6 5.1644 4.2224 -4.3694 14 1 5.0549 3.2939 -4.9100 15 6 4.8778 5.4196 -4.9904 16 7 5.0107 6.5502 -4.3319 17 14 4.3008 5.4355 -6.7669 18 1 4.2337 4.0429 -7.2782 19 1 2.9539 6.0562 -6.8444 20 1 5.2555 6.2201 -7.5904 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 1.6767 1.9562 0.8900 27 1 1.6767 1.9564 -0.8900 28 1 3.8709 0.9162 0.7806 29 1 3.6864 3.3367 0.8904 30 1 3.6857 3.3377 -0.8895 31 1 8.4451 2.7033 1.3374 32 1 8.5108 2.7078 -1.2869 33 1 4.9500 2.1965 -2.5791 34 1 6.6393 2.3162 -3.1267 35 1 6.5547 4.7789 -2.8493 36 1 4.8654 4.6591 -2.3017 37 1 4.8094 7.3925 -4.7690 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051005311.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:14 Heat of formation + Delta-G solvation = 19.284082 kcal Electronic energy + Delta-G solvation = -16598.023608 eV Core-core repulsion = 13988.668711 eV Total energy + Delta-G solvation = -2609.354897 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.96394 -37.79624 -36.40512 -34.50096 -34.10949 -31.29246 -30.65631 -27.45548 -26.78669 -24.70557 -23.46757 -22.30329 -22.18116 -20.49149 -18.77876 -17.72513 -16.91051 -16.75052 -16.32115 -15.79690 -15.48192 -15.23535 -14.98145 -14.47023 -14.37815 -14.13877 -13.83709 -13.45205 -13.05482 -12.97419 -12.91132 -12.61911 -12.47627 -12.13093 -11.96829 -11.86287 -11.60284 -11.43392 -10.95089 -10.63769 -10.38821 -9.56909 -9.24073 -8.26533 -6.39605 1.16298 1.40600 1.41642 1.54475 2.00955 2.16342 2.40075 3.08552 3.17833 3.61763 3.86547 4.00653 4.09270 4.17625 4.36956 4.41031 4.46169 4.53095 4.65980 4.67888 4.68167 4.80840 4.84935 4.92929 5.20143 5.27957 5.32410 5.34650 5.40889 5.60768 5.68993 5.87992 5.93856 6.03391 6.31264 6.37468 6.76127 7.17189 7.31336 8.85759 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.015165 B = 0.006992 C = 0.005101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.897732 B = 4003.875011 C = 5488.074303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.115 4.115 3 C 0.057 3.943 4 N -0.687 5.687 5 C 0.151 3.849 6 C 0.191 3.809 7 N -0.520 5.520 8 C -0.050 4.050 9 C -0.061 4.061 10 N -0.439 5.439 11 C 0.121 3.879 12 C 0.026 3.974 13 C -0.540 4.540 14 H 0.071 0.929 15 C 0.005 3.995 16 N -0.932 5.932 17 Si 0.968 3.032 18 H -0.257 1.257 19 H -0.280 1.280 20 H -0.280 1.280 21 H 0.058 0.942 22 H 0.053 0.947 23 H 0.066 0.934 24 H 0.062 0.938 25 H 0.066 0.934 26 H 0.038 0.962 27 H 0.065 0.935 28 H 0.347 0.653 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.193 0.807 32 H 0.194 0.806 33 H 0.091 0.909 34 H 0.095 0.905 35 H -0.008 1.008 36 H -0.006 1.006 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.646 -11.375 6.985 13.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C -0.071 4.071 4 N -0.320 5.320 5 C 0.021 3.979 6 C -0.072 4.072 7 N -0.241 5.241 8 C -0.198 4.198 9 C -0.196 4.196 10 N -0.119 5.119 11 C -0.001 4.001 12 C -0.012 4.012 13 C -0.578 4.578 14 H 0.090 0.910 15 C -0.194 4.194 16 N -0.571 5.571 17 Si 0.792 3.208 18 H -0.181 1.181 19 H -0.205 1.205 20 H -0.205 1.205 21 H 0.077 0.923 22 H 0.072 0.928 23 H 0.085 0.915 24 H 0.081 0.919 25 H 0.085 0.915 26 H 0.057 0.943 27 H 0.084 0.916 28 H 0.165 0.835 29 H 0.080 0.920 30 H 0.095 0.905 31 H 0.210 0.790 32 H 0.211 0.789 33 H 0.110 0.890 34 H 0.113 0.887 35 H 0.010 0.990 36 H 0.012 0.988 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.964 -11.271 6.924 13.809 hybrid contribution 0.131 0.946 -0.743 1.210 sum -3.832 -10.326 6.181 12.630 Atomic orbital electron populations 1.21712 0.94379 1.02433 1.02055 1.21441 0.96477 0.94942 1.02483 1.22088 0.85815 0.98430 1.00806 1.60446 1.08669 1.12140 1.50698 1.20038 0.84362 0.91529 1.01980 1.23163 0.95544 1.06599 0.81864 1.70128 1.03281 1.21634 1.29030 1.22665 0.94820 1.09020 0.93285 1.23243 0.87825 1.11208 0.97304 1.45722 1.06760 1.51092 1.08324 1.22032 1.01368 0.99644 0.77011 1.19211 0.95304 0.90745 0.95956 1.21462 1.45473 0.93510 0.97378 0.91042 1.25952 0.95316 0.95089 1.03005 1.70116 1.49565 0.98426 1.39008 0.85351 0.77785 0.78871 0.78771 1.18064 1.20542 1.20546 0.92283 0.92815 0.91509 0.91924 0.91497 0.94328 0.91604 0.83452 0.92044 0.90535 0.78971 0.78926 0.89050 0.88665 0.98994 0.98784 0.92645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 9.91 71.98 0.71 -1.66 16 2 C -0.12 -2.22 6.19 30.59 0.19 -2.04 16 3 C 0.06 1.34 5.69 86.30 0.49 1.83 16 4 N -0.69 -19.33 6.49 -517.94 -3.36 -22.69 16 5 C 0.15 5.04 5.84 85.56 0.50 5.54 16 6 C 0.19 7.18 7.42 138.13 1.02 8.20 16 7 N -0.52 -19.54 11.25 -188.13 -2.12 -21.66 16 8 C -0.05 -1.64 11.87 83.52 0.99 -0.65 16 9 C -0.06 -2.05 11.58 83.09 0.96 -1.09 16 10 N -0.44 -16.65 2.75 -514.30 -1.41 -18.07 16 11 C 0.12 4.81 5.61 86.38 0.48 5.29 16 12 C 0.03 1.30 5.30 29.85 0.16 1.45 16 13 C -0.54 -28.86 9.11 25.60 0.23 -28.62 16 14 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 15 C 0.01 0.28 5.46 84.66 0.46 0.74 16 16 N -0.93 -55.24 13.29 21.45 0.28 -54.96 16 17 Si 0.97 42.37 29.54 68.60 2.03 44.40 16 18 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 19 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 20 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 21 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 22 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 23 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 24 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 28 H 0.35 9.29 8.72 -89.69 -0.78 8.51 16 29 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.08 2.83 7.33 -2.39 -0.02 2.81 16 31 H 0.19 4.92 8.06 -2.91 -0.02 4.89 16 32 H 0.19 5.24 8.06 -2.91 -0.02 5.22 16 33 H 0.09 3.55 7.94 -2.39 -0.02 3.53 16 34 H 0.10 3.47 8.14 -2.39 -0.02 3.45 16 35 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 36 H -0.01 -0.35 7.63 -2.39 -0.02 -0.36 16 37 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 Total: -1.00 -63.77 313.82 1.88 -61.90 By element: Atomic # 1 Polarization: 21.82 SS G_CDS: 0.25 Total: 22.07 kcal Atomic # 6 Polarization: -17.21 SS G_CDS: 6.21 Total: -11.00 kcal Atomic # 7 Polarization: -110.76 SS G_CDS: -6.61 Total: -117.37 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.40 kcal Total: -63.77 1.88 -61.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051005311.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.181 kcal (2) G-P(sol) polarization free energy of solvation -63.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds