Wall clock time and date at job start Mon Mar 30 2020 03:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.34949 * 126.12648 * 2 1 4 4 H 0.97000 * 126.03895 * 0.02562 * 3 2 1 5 5 N 1.40079 * 107.92609 * 180.02562 * 3 2 1 6 6 C 1.30843 * 108.20489 * 359.72313 * 5 3 2 7 7 C 1.35322 * 126.12586 * 180.02562 * 2 1 3 8 8 C 1.50692 * 126.04222 * 359.97438 * 7 2 1 9 9 C 1.53001 * 109.47056 * 85.00039 * 8 7 2 10 10 C 1.53001 * 109.46963 * 180.02562 * 9 8 7 11 11 N 1.46904 * 109.47173 * 180.02562 * 10 9 8 12 12 C 1.46904 * 111.00152 * 179.97438 * 11 10 9 13 13 H 1.08999 * 109.46956 * 324.99875 * 12 11 10 14 14 C 1.53000 * 109.46945 * 84.99616 * 12 11 10 15 15 C 1.50693 * 109.46986 * 204.99793 * 12 11 10 16 16 H 1.08001 * 120.00156 * 354.36414 * 15 12 11 17 17 C 1.37883 * 119.99975 * 174.36110 * 15 12 11 18 18 N 1.31514 * 119.99792 * 156.55708 * 17 15 12 19 19 Si 1.86795 * 120.00000 * 336.83419 * 17 15 12 20 20 H 1.48494 * 109.47243 * 179.72421 * 19 17 15 21 21 H 1.48501 * 109.46953 * 299.72341 * 19 17 15 22 22 H 1.48500 * 109.47267 * 59.72084 * 19 17 15 23 23 H 1.08999 * 109.46835 * 269.97271 * 1 2 3 24 24 H 1.08999 * 109.47545 * 29.97200 * 1 2 3 25 25 H 1.09004 * 109.46867 * 149.97545 * 1 2 3 26 26 H 1.08007 * 125.89745 * 180.25982 * 6 5 3 27 27 H 1.09010 * 109.47046 * 325.00347 * 8 7 2 28 28 H 1.09000 * 109.47216 * 205.00095 * 8 7 2 29 29 H 1.08993 * 109.47087 * 60.00137 * 9 8 7 30 30 H 1.08998 * 109.47276 * 299.99562 * 9 8 7 31 31 H 1.08999 * 109.47702 * 60.00028 * 10 9 8 32 32 H 1.09000 * 109.47086 * 299.99919 * 10 9 8 33 33 H 1.00892 * 110.99818 * 56.04271 * 11 10 9 34 34 H 1.08996 * 109.47340 * 293.06818 * 14 12 11 35 35 H 1.09000 * 109.46855 * 53.06982 * 14 12 11 36 36 H 1.08997 * 109.46527 * 173.06766 * 14 12 11 37 37 H 0.96996 * 119.99955 * 355.20631 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3026 1.0900 0.0000 4 1 2.0055 2.0134 0.0004 5 7 3.6333 0.6525 -0.0006 6 6 3.6334 -0.6559 0.0051 7 6 2.3048 -1.0930 -0.0005 8 6 1.8434 -2.5276 -0.0006 9 6 1.5670 -2.9743 -1.4376 10 6 1.0979 -4.4306 -1.4376 11 7 0.8331 -4.8598 -2.8174 12 6 0.3801 -6.2567 -2.8565 13 1 0.8900 -6.8258 -2.0792 14 6 -1.1305 -6.3098 -2.6197 15 6 0.6985 -6.8503 -4.2045 16 1 1.1046 -6.2265 -4.9870 17 6 0.4713 -8.1900 -4.4389 18 7 0.2975 -8.6221 -5.6688 19 14 0.4026 -9.3898 -3.0089 20 1 0.1411 -10.7582 -3.5229 21 1 1.6993 -9.3722 -2.2853 22 1 -0.6871 -8.9928 -2.0815 23 1 -0.3633 -0.0005 1.0277 24 1 -0.3634 0.8902 -0.5134 25 1 -0.3633 -0.8898 -0.5142 26 1 4.5084 -1.2891 0.0101 27 1 0.9308 -2.6157 0.5892 28 1 2.6189 -3.1587 0.4333 29 1 2.4794 -2.8861 -2.0273 30 1 0.7914 -2.3432 -1.8715 31 1 0.1853 -4.5185 -0.8480 32 1 1.8731 -5.0620 -1.0035 33 1 1.6463 -4.7272 -3.3996 34 1 -1.3495 -5.9955 -1.5992 35 1 -1.6318 -5.6427 -3.3209 36 1 -1.4861 -7.3290 -2.7702 37 1 0.2598 -7.9905 -6.4040 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067406027.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:20 Heat of formation + Delta-G solvation = 26.816896 kcal Electronic energy + Delta-G solvation = -16322.923091 eV Core-core repulsion = 13713.894842 eV Total energy + Delta-G solvation = -2609.028250 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.19801 -38.16486 -35.77898 -34.22888 -33.40038 -31.93710 -29.88841 -27.95864 -26.82733 -25.19011 -22.75067 -22.29830 -21.50880 -20.13846 -19.58383 -18.12341 -16.80041 -16.11777 -15.95966 -15.73577 -15.20695 -15.12008 -14.68134 -14.25991 -13.95351 -13.93794 -13.58952 -13.36826 -13.09336 -12.98015 -12.70612 -12.54350 -12.26645 -11.99796 -11.84412 -11.73169 -11.50245 -11.27957 -11.03214 -10.45064 -10.38719 -9.26320 -9.11622 -8.73058 -6.33880 0.93469 1.48131 1.53667 1.74038 1.81651 2.03356 2.50739 3.01569 3.57895 3.85546 3.90404 4.17668 4.26536 4.33052 4.53879 4.61122 4.64885 4.76231 4.81520 4.89579 4.91799 4.96808 4.99819 5.07319 5.10976 5.16904 5.24016 5.47701 5.53293 5.64898 5.74555 5.84681 6.06273 6.33650 6.45029 6.73351 6.74043 6.83397 7.41501 8.61155 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.046859 B = 0.004122 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.393609 B = 6790.425763 C = 6884.581367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.092 3.908 3 N -0.475 5.475 4 H 0.447 0.553 5 N -0.334 5.334 6 C 0.046 3.954 7 C -0.251 4.251 8 C -0.029 4.029 9 C -0.096 4.096 10 C 0.057 3.943 11 N -0.690 5.690 12 C 0.189 3.811 13 H -0.004 1.004 14 C -0.127 4.127 15 C -0.617 4.617 16 H 0.022 0.978 17 C -0.012 4.012 18 N -0.930 5.930 19 Si 1.080 2.920 20 H -0.287 1.287 21 H -0.268 1.268 22 H -0.247 1.247 23 H 0.097 0.903 24 H 0.086 0.914 25 H 0.087 0.913 26 H 0.195 0.805 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.047 0.953 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.020 0.980 33 H 0.329 0.671 34 H 0.051 0.949 35 H 0.037 0.963 36 H 0.038 0.962 37 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.359 16.512 16.197 23.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.037 4.037 3 N -0.186 5.186 4 H 0.293 0.707 5 N -0.156 5.156 6 C -0.139 4.139 7 C -0.262 4.262 8 C -0.068 4.068 9 C -0.134 4.134 10 C -0.072 4.072 11 N -0.320 5.320 12 C 0.080 3.920 13 H 0.014 0.986 14 C -0.185 4.185 15 C -0.655 4.655 16 H 0.040 0.960 17 C -0.212 4.212 18 N -0.565 5.565 19 Si 0.901 3.099 20 H -0.213 1.213 21 H -0.193 1.193 22 H -0.171 1.171 23 H 0.115 0.885 24 H 0.105 0.895 25 H 0.106 0.894 26 H 0.212 0.788 27 H 0.098 0.902 28 H 0.092 0.908 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.038 0.962 33 H 0.146 0.854 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.299 16.229 16.544 23.177 hybrid contribution 0.675 0.927 -1.116 1.600 sum 0.975 17.157 15.428 23.094 Atomic orbital electron populations 1.20608 0.85073 1.04946 1.04633 1.21389 0.95795 0.87097 0.99437 1.46283 1.03619 1.08935 1.59714 0.70724 1.77243 0.98010 1.13813 1.26554 1.24167 0.98850 0.92032 0.98868 1.20051 0.92367 0.96366 1.17413 1.19762 1.01640 0.89799 0.95599 1.21422 1.00456 0.94313 0.97204 1.22095 0.99420 0.95829 0.89878 1.60556 1.38916 1.22407 1.10148 1.19287 0.92917 0.85724 0.94100 0.98617 1.21930 0.97518 0.99733 0.99298 1.22287 1.47870 0.96522 0.98803 0.96008 1.27119 0.91803 0.99794 1.02457 1.70967 1.45824 1.38713 1.01011 0.83597 0.78994 0.74035 0.73294 1.21346 1.19311 1.17074 0.88480 0.89497 0.89418 0.78805 0.90228 0.90814 0.93386 0.92016 0.90994 0.96153 0.85400 0.93024 0.94335 0.94344 0.93721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.11 10.12 71.24 0.72 -0.39 16 2 C 0.09 1.69 7.21 41.41 0.30 1.99 16 3 N -0.48 -8.87 7.36 -48.00 -0.35 -9.22 16 4 H 0.45 5.43 8.96 -213.33 -1.91 3.52 16 5 N -0.33 -8.09 12.70 -57.02 -0.72 -8.81 16 6 C 0.05 1.05 11.96 85.24 1.02 2.07 16 7 C -0.25 -5.33 5.35 -20.15 -0.11 -5.44 16 8 C -0.03 -0.58 5.25 29.85 0.16 -0.43 16 9 C -0.10 -2.44 5.46 30.60 0.17 -2.27 16 10 C 0.06 1.78 5.48 86.30 0.47 2.25 16 11 N -0.69 -28.21 6.30 -495.44 -3.12 -31.34 16 12 C 0.19 8.93 2.20 44.17 0.10 9.03 16 13 H 0.00 -0.17 6.37 -2.39 -0.02 -0.18 16 14 C -0.13 -5.51 9.09 71.98 0.65 -4.86 16 15 C -0.62 -35.35 8.77 25.60 0.22 -35.13 16 16 H 0.02 1.37 7.92 -2.91 -0.02 1.35 16 17 C -0.01 -0.70 5.19 84.66 0.44 -0.26 16 18 N -0.93 -58.44 13.70 21.45 0.29 -58.15 16 19 Si 1.08 49.66 26.45 68.60 1.81 51.47 16 20 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 21 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 22 H -0.25 -10.11 6.15 99.48 0.61 -9.49 16 23 H 0.10 0.84 8.14 -2.39 -0.02 0.83 16 24 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.09 1.17 7.51 -2.39 -0.02 1.15 16 26 H 0.20 3.50 8.06 -2.91 -0.02 3.47 16 27 H 0.08 1.40 8.02 -2.38 -0.02 1.38 16 28 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.06 1.62 7.76 -2.39 -0.02 1.60 16 31 H 0.07 2.11 7.58 -2.39 -0.02 2.10 16 32 H 0.02 0.64 8.05 -2.39 -0.02 0.62 16 33 H 0.33 14.02 8.26 -89.70 -0.74 13.28 16 34 H 0.05 1.88 7.64 -2.39 -0.02 1.86 16 35 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.04 1.72 5.48 -2.39 -0.01 1.70 16 37 H 0.25 16.22 8.73 -92.71 -0.81 15.41 16 Total: -1.00 -69.50 303.99 0.33 -69.17 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: -1.72 Total: 20.32 kcal Atomic # 6 Polarization: -37.58 SS G_CDS: 4.14 Total: -33.44 kcal Atomic # 7 Polarization: -103.61 SS G_CDS: -3.91 Total: -107.52 kcal Atomic # 14 Polarization: 49.66 SS G_CDS: 1.81 Total: 51.47 kcal Total: -69.50 0.33 -69.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067406027.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.987 kcal (2) G-P(sol) polarization free energy of solvation -69.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds