Wall clock time and date at job start Mon Mar 30 2020 03:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.34949 * 126.12376 * 2 1 4 4 H 0.96997 * 126.04473 * 359.97438 * 3 2 1 5 5 N 1.40088 * 107.92295 * 180.23929 * 3 2 1 6 6 C 1.30842 * 108.20212 * 359.75545 * 5 3 2 7 7 C 1.35311 * 126.12573 * 179.82216 * 2 1 3 8 8 C 1.50697 * 126.04144 * 0.02562 * 7 2 1 9 9 C 1.52996 * 109.47298 * 84.71826 * 8 7 2 10 10 C 1.53000 * 109.47375 * 180.02562 * 9 8 7 11 11 N 1.46892 * 109.47270 * 179.97438 * 10 9 8 12 12 C 1.46894 * 111.00323 * 179.97438 * 11 10 9 13 13 H 1.09009 * 109.47067 * 34.99610 * 12 11 10 14 14 C 1.53005 * 109.47181 * 275.00155 * 12 11 10 15 15 C 1.50695 * 109.47570 * 155.00112 * 12 11 10 16 16 H 1.07997 * 120.00124 * 5.45761 * 15 12 11 17 17 C 1.37884 * 120.00399 * 185.46665 * 15 12 11 18 18 N 1.31513 * 119.99952 * 9.54363 * 17 15 12 19 19 Si 1.86794 * 119.99942 * 189.55210 * 17 15 12 20 20 H 1.48504 * 109.47514 * 84.99063 * 19 17 15 21 21 H 1.48510 * 109.46935 * 204.98899 * 19 17 15 22 22 H 1.48497 * 109.47302 * 324.98584 * 19 17 15 23 23 H 1.09000 * 109.46985 * 270.18175 * 1 2 3 24 24 H 1.09002 * 109.46761 * 30.18326 * 1 2 3 25 25 H 1.08995 * 109.46896 * 150.18064 * 1 2 3 26 26 H 1.08000 * 125.89477 * 180.02562 * 6 5 3 27 27 H 1.08999 * 109.47027 * 204.72025 * 8 7 2 28 28 H 1.09007 * 109.47136 * 324.71200 * 8 7 2 29 29 H 1.09002 * 109.46519 * 299.99945 * 9 8 7 30 30 H 1.08997 * 109.47461 * 59.99660 * 9 8 7 31 31 H 1.08999 * 109.46757 * 300.00080 * 10 9 8 32 32 H 1.08997 * 109.47335 * 59.99299 * 10 9 8 33 33 H 1.00903 * 111.00267 * 56.04586 * 11 10 9 34 34 H 1.08999 * 109.47174 * 303.68794 * 14 12 11 35 35 H 1.09003 * 109.47090 * 63.69268 * 14 12 11 36 36 H 1.09006 * 109.46808 * 183.68799 * 14 12 11 37 37 H 0.96996 * 120.00405 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3026 1.0900 0.0000 4 1 2.0056 2.0134 -0.0004 5 7 3.6334 0.6525 -0.0056 6 6 3.6335 -0.6559 -0.0035 7 6 2.3048 -1.0929 0.0034 8 6 1.8433 -2.5275 0.0073 9 6 1.5612 -2.9764 -1.4279 10 6 1.0921 -4.4327 -1.4238 11 7 0.8207 -4.8635 -2.8017 12 6 0.3675 -6.2604 -2.8370 13 1 -0.2364 -6.4689 -1.9537 14 6 1.5824 -7.1904 -2.8552 15 6 -0.4589 -6.4894 -4.0761 16 1 -0.5576 -5.7050 -4.8120 17 6 -1.0893 -7.7001 -4.2704 18 7 -1.1280 -8.5849 -3.2982 19 14 -1.8883 -8.0838 -5.9147 20 1 -0.8674 -8.6272 -6.8464 21 1 -2.9648 -9.0881 -5.7197 22 1 -2.4679 -6.8414 -6.4854 23 1 -0.3633 0.0033 1.0277 24 1 -0.3633 0.8884 -0.5167 25 1 -0.3633 -0.8916 -0.5110 26 1 4.5084 -1.2891 -0.0062 27 1 2.6205 -3.1580 0.4391 28 1 0.9332 -2.6148 0.6009 29 1 0.7840 -2.3459 -1.8596 30 1 2.4712 -2.8891 -2.0214 31 1 1.8690 -5.0635 -0.9919 32 1 0.1820 -4.5196 -0.8304 33 1 1.6312 -4.7318 -3.3881 34 1 2.2204 -6.9382 -3.7022 35 1 2.1446 -7.0719 -1.9289 36 1 1.2476 -8.2236 -2.9474 37 1 -1.5711 -9.4368 -3.4349 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067406030.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:24 Heat of formation + Delta-G solvation = 49.941462 kcal Electronic energy + Delta-G solvation = -16261.480878 eV Core-core repulsion = 13653.455385 eV Total energy + Delta-G solvation = -2608.025493 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.33451 -36.47769 -34.29859 -32.63173 -32.23840 -30.32383 -28.25688 -26.75759 -25.07682 -23.96353 -21.87602 -20.98292 -20.17840 -19.23827 -17.28010 -16.22450 -15.07644 -15.01526 -14.66042 -14.37420 -14.24511 -13.39942 -13.25109 -12.98804 -12.91543 -12.43864 -12.15559 -12.00232 -11.67352 -11.52643 -10.97216 -10.90911 -10.77893 -10.59679 -10.49915 -10.23088 -10.06366 -9.72828 -9.57497 -8.99857 -8.35349 -8.28212 -7.16199 -5.96208 -3.95358 1.78487 2.72640 2.79215 3.36007 3.41908 3.45811 4.48514 4.62093 4.73779 4.95659 5.13393 5.30489 5.34513 5.36404 5.46953 5.60710 5.73302 5.87613 5.90434 6.04088 6.10803 6.26156 6.30102 6.59814 6.66265 6.68830 6.72306 6.82808 7.09140 7.18698 7.42044 7.59190 7.65243 7.93880 8.28429 8.62901 8.69593 9.11316 9.68117 11.13113 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.044934 B = 0.003971 C = 0.003834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.988909 B = 7050.135672 C = 7302.194177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.087 3.913 3 N -0.481 5.481 4 H 0.435 0.565 5 N -0.303 5.303 6 C 0.056 3.944 7 C -0.227 4.227 8 C -0.040 4.040 9 C -0.109 4.109 10 C 0.060 3.940 11 N -0.685 5.685 12 C 0.208 3.792 13 H 0.040 0.960 14 C -0.162 4.162 15 C -0.496 4.496 16 H 0.061 0.939 17 C 0.057 3.943 18 N -0.896 5.896 19 Si 0.892 3.108 20 H -0.281 1.281 21 H -0.289 1.289 22 H -0.274 1.274 23 H 0.079 0.921 24 H 0.069 0.931 25 H 0.093 0.907 26 H 0.181 0.819 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.016 0.984 32 H 0.062 0.938 33 H 0.323 0.677 34 H 0.029 0.971 35 H 0.010 0.990 36 H 0.070 0.930 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.072 15.113 7.933 17.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.042 4.042 3 N -0.190 5.190 4 H 0.278 0.722 5 N -0.125 5.125 6 C -0.130 4.130 7 C -0.238 4.238 8 C -0.080 4.080 9 C -0.147 4.147 10 C -0.070 4.070 11 N -0.314 5.314 12 C 0.100 3.900 13 H 0.058 0.942 14 C -0.222 4.222 15 C -0.535 4.535 16 H 0.080 0.920 17 C -0.144 4.144 18 N -0.536 5.536 19 Si 0.721 3.279 20 H -0.208 1.208 21 H -0.215 1.215 22 H -0.199 1.199 23 H 0.098 0.902 24 H 0.088 0.912 25 H 0.112 0.888 26 H 0.198 0.802 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.034 0.966 32 H 0.081 0.919 33 H 0.139 0.861 34 H 0.048 0.952 35 H 0.029 0.971 36 H 0.089 0.911 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.079 16.217 7.968 18.769 hybrid contribution -0.128 -1.083 -0.696 1.294 sum 4.951 15.134 7.273 17.505 Atomic orbital electron populations 1.20513 0.87171 1.04409 1.03344 1.20936 0.94536 0.87454 1.01229 1.46227 1.04229 1.08080 1.60428 0.72219 1.77288 0.96611 1.13275 1.25276 1.23809 0.97931 0.91953 0.99319 1.19954 0.92171 0.96010 1.15667 1.19894 1.00864 0.89672 0.97536 1.21569 1.01048 0.96730 0.95336 1.21916 0.98821 0.93687 0.92622 1.60803 1.37820 1.25659 1.07165 1.19193 0.91848 0.80762 0.98181 0.94225 1.22377 0.98859 1.04441 0.96486 1.21131 1.28961 0.98432 1.04990 0.92038 1.24947 0.96188 0.96620 0.96609 1.69965 1.44502 1.08056 1.31028 0.86603 0.78823 0.78037 0.84474 1.20769 1.21489 1.19944 0.90250 0.91239 0.88805 0.80176 0.91406 0.91462 0.91633 0.92638 0.96602 0.91911 0.86134 0.95234 0.97120 0.91127 0.93107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.77 10.12 36.01 0.36 -0.40 16 2 C 0.09 0.92 7.21 -82.26 -0.59 0.33 16 3 N -0.48 -5.01 7.36 33.48 0.25 -4.77 16 4 H 0.43 3.13 8.96 -182.61 -1.64 1.49 16 5 N -0.30 -3.86 12.70 30.63 0.39 -3.47 16 6 C 0.06 0.67 11.96 -17.36 -0.21 0.47 16 7 C -0.23 -2.70 5.35 -105.06 -0.56 -3.26 16 8 C -0.04 -0.48 5.25 -27.89 -0.15 -0.63 16 9 C -0.11 -1.53 5.46 -26.73 -0.15 -1.68 16 10 C 0.06 1.04 5.48 -3.83 -0.02 1.02 16 11 N -0.69 -14.60 6.23 -107.96 -0.67 -15.28 16 12 C 0.21 5.27 2.44 -68.87 -0.17 5.10 16 13 H 0.04 1.11 7.74 -51.92 -0.40 0.71 16 14 C -0.16 -3.87 9.04 37.16 0.34 -3.53 16 15 C -0.50 -13.90 8.76 -34.44 -0.30 -14.20 16 16 H 0.06 1.74 7.83 -52.49 -0.41 1.33 16 17 C 0.06 1.60 5.17 -17.82 -0.09 1.51 16 18 N -0.90 -26.03 12.16 55.43 0.67 -25.35 16 19 Si 0.89 21.61 29.55 -169.99 -5.02 16.58 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 23 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.09 0.83 7.47 -51.93 -0.39 0.44 16 26 H 0.18 1.72 8.06 -52.49 -0.42 1.30 16 27 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.07 0.76 8.02 -51.92 -0.42 0.34 16 29 H 0.06 0.96 7.73 -51.93 -0.40 0.56 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.02 0.28 7.51 -51.93 -0.39 -0.11 16 32 H 0.06 1.14 8.06 -51.93 -0.42 0.72 16 33 H 0.32 6.53 8.43 -39.29 -0.33 6.20 16 34 H 0.03 0.66 8.07 -51.93 -0.42 0.24 16 35 H 0.01 0.21 7.55 -51.93 -0.39 -0.18 16 36 H 0.07 1.85 6.83 -51.93 -0.35 1.50 16 37 H 0.26 7.18 8.31 -40.82 -0.34 6.85 16 LS Contribution 308.70 15.07 4.65 4.65 Total: -1.00 -31.26 308.70 -8.48 -39.74 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -7.21 Total: 3.16 kcal Atomic # 6 Polarization: -13.72 SS G_CDS: -1.54 Total: -15.26 kcal Atomic # 7 Polarization: -49.51 SS G_CDS: 0.64 Total: -48.87 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.26 -8.48 -39.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067406030.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.680 kcal (2) G-P(sol) polarization free energy of solvation -31.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds