Wall clock time and date at job start Mon Mar 30 2020 03:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.34949 * 126.12376 * 2 1 4 4 H 0.96997 * 126.04473 * 359.97438 * 3 2 1 5 5 N 1.40088 * 107.92295 * 180.23929 * 3 2 1 6 6 C 1.30842 * 108.20212 * 359.75545 * 5 3 2 7 7 C 1.35311 * 126.12573 * 179.82216 * 2 1 3 8 8 C 1.50697 * 126.04144 * 0.02562 * 7 2 1 9 9 C 1.52996 * 109.47298 * 84.71826 * 8 7 2 10 10 C 1.53000 * 109.47375 * 180.02562 * 9 8 7 11 11 N 1.46892 * 109.47270 * 179.97438 * 10 9 8 12 12 C 1.46894 * 111.00323 * 179.97438 * 11 10 9 13 13 H 1.09009 * 109.47067 * 34.99610 * 12 11 10 14 14 C 1.53005 * 109.47181 * 275.00155 * 12 11 10 15 15 C 1.50695 * 109.47570 * 155.00112 * 12 11 10 16 16 H 1.07997 * 120.00124 * 5.45761 * 15 12 11 17 17 C 1.37884 * 120.00399 * 185.46665 * 15 12 11 18 18 N 1.31513 * 119.99952 * 9.54363 * 17 15 12 19 19 Si 1.86794 * 119.99942 * 189.55210 * 17 15 12 20 20 H 1.48504 * 109.47514 * 84.99063 * 19 17 15 21 21 H 1.48510 * 109.46935 * 204.98899 * 19 17 15 22 22 H 1.48497 * 109.47302 * 324.98584 * 19 17 15 23 23 H 1.09000 * 109.46985 * 270.18175 * 1 2 3 24 24 H 1.09002 * 109.46761 * 30.18326 * 1 2 3 25 25 H 1.08995 * 109.46896 * 150.18064 * 1 2 3 26 26 H 1.08000 * 125.89477 * 180.02562 * 6 5 3 27 27 H 1.08999 * 109.47027 * 204.72025 * 8 7 2 28 28 H 1.09007 * 109.47136 * 324.71200 * 8 7 2 29 29 H 1.09002 * 109.46519 * 299.99945 * 9 8 7 30 30 H 1.08997 * 109.47461 * 59.99660 * 9 8 7 31 31 H 1.08999 * 109.46757 * 300.00080 * 10 9 8 32 32 H 1.08997 * 109.47335 * 59.99299 * 10 9 8 33 33 H 1.00903 * 111.00267 * 56.04586 * 11 10 9 34 34 H 1.08999 * 109.47174 * 303.68794 * 14 12 11 35 35 H 1.09003 * 109.47090 * 63.69268 * 14 12 11 36 36 H 1.09006 * 109.46808 * 183.68799 * 14 12 11 37 37 H 0.96996 * 120.00405 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3026 1.0900 0.0000 4 1 2.0056 2.0134 -0.0004 5 7 3.6334 0.6525 -0.0056 6 6 3.6335 -0.6559 -0.0035 7 6 2.3048 -1.0929 0.0034 8 6 1.8433 -2.5275 0.0073 9 6 1.5612 -2.9764 -1.4279 10 6 1.0921 -4.4327 -1.4238 11 7 0.8207 -4.8635 -2.8017 12 6 0.3675 -6.2604 -2.8370 13 1 -0.2364 -6.4689 -1.9537 14 6 1.5824 -7.1904 -2.8552 15 6 -0.4589 -6.4894 -4.0761 16 1 -0.5576 -5.7050 -4.8120 17 6 -1.0893 -7.7001 -4.2704 18 7 -1.1280 -8.5849 -3.2982 19 14 -1.8883 -8.0838 -5.9147 20 1 -0.8674 -8.6272 -6.8464 21 1 -2.9648 -9.0881 -5.7197 22 1 -2.4679 -6.8414 -6.4854 23 1 -0.3633 0.0033 1.0277 24 1 -0.3633 0.8884 -0.5167 25 1 -0.3633 -0.8916 -0.5110 26 1 4.5084 -1.2891 -0.0062 27 1 2.6205 -3.1580 0.4391 28 1 0.9332 -2.6148 0.6009 29 1 0.7840 -2.3459 -1.8596 30 1 2.4712 -2.8891 -2.0214 31 1 1.8690 -5.0635 -0.9919 32 1 0.1820 -4.5196 -0.8304 33 1 1.6312 -4.7318 -3.3881 34 1 2.2204 -6.9382 -3.7022 35 1 2.1446 -7.0719 -1.9289 36 1 1.2476 -8.2236 -2.9474 37 1 -1.5711 -9.4368 -3.4349 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067406030.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:23 Heat of formation + Delta-G solvation = 29.048221 kcal Electronic energy + Delta-G solvation = -16262.386877 eV Core-core repulsion = 13653.455385 eV Total energy + Delta-G solvation = -2608.931492 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.17814 -38.11565 -35.71721 -34.06996 -33.37421 -31.67058 -29.58471 -27.81537 -27.16029 -25.22097 -22.72696 -22.27446 -22.10793 -20.13412 -18.32970 -18.08534 -16.69709 -16.33665 -15.90504 -15.70506 -15.13565 -15.11917 -14.54769 -14.05779 -13.89228 -13.62658 -13.58045 -13.23244 -13.09833 -12.90570 -12.74202 -12.65289 -12.31556 -12.17743 -12.05255 -11.74594 -11.57625 -11.26004 -11.00506 -10.43543 -10.42282 -9.23874 -8.90083 -8.09191 -6.16376 0.95138 1.45006 1.45659 1.55789 1.84046 2.04922 2.46987 3.20495 3.71157 3.88001 3.93001 4.20802 4.30294 4.36288 4.58690 4.65460 4.74612 4.78220 4.82740 4.90229 4.95004 5.00873 5.06546 5.10732 5.13987 5.27011 5.43211 5.50065 5.58277 5.68230 5.76144 5.80847 6.27470 6.46616 6.72689 6.75670 6.92216 6.99305 7.52050 8.98805 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.044934 B = 0.003971 C = 0.003834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.988909 B = 7050.135672 C = 7302.194177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.092 3.908 3 N -0.475 5.475 4 H 0.447 0.553 5 N -0.332 5.332 6 C 0.049 3.951 7 C -0.250 4.250 8 C -0.030 4.030 9 C -0.093 4.093 10 C 0.062 3.938 11 N -0.691 5.691 12 C 0.212 3.788 13 H 0.006 0.994 14 C -0.149 4.149 15 C -0.517 4.517 16 H 0.054 0.946 17 C 0.010 3.990 18 N -0.924 5.924 19 Si 0.957 3.043 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.270 1.270 23 H 0.095 0.905 24 H 0.088 0.912 25 H 0.085 0.915 26 H 0.197 0.803 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.019 0.981 32 H 0.053 0.947 33 H 0.330 0.670 34 H 0.039 0.961 35 H 0.030 0.970 36 H 0.042 0.958 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.085 16.085 7.696 18.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.037 4.037 3 N -0.185 5.185 4 H 0.293 0.707 5 N -0.155 5.155 6 C -0.137 4.137 7 C -0.261 4.261 8 C -0.069 4.069 9 C -0.131 4.131 10 C -0.067 4.067 11 N -0.320 5.320 12 C 0.103 3.897 13 H 0.024 0.976 14 C -0.209 4.209 15 C -0.555 4.555 16 H 0.072 0.928 17 C -0.188 4.188 18 N -0.564 5.564 19 Si 0.782 3.218 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.195 1.195 23 H 0.113 0.887 24 H 0.106 0.894 25 H 0.103 0.897 26 H 0.214 0.786 27 H 0.092 0.908 28 H 0.091 0.909 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.037 0.963 32 H 0.071 0.929 33 H 0.147 0.853 34 H 0.058 0.942 35 H 0.049 0.951 36 H 0.061 0.939 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.106 17.223 7.735 19.558 hybrid contribution -0.145 -1.330 -0.576 1.457 sum 4.961 15.893 7.159 18.123 Atomic orbital electron populations 1.20599 0.85295 1.04906 1.04526 1.21348 0.95692 0.87191 0.99518 1.46270 1.03621 1.08872 1.59757 0.70719 1.77239 0.97919 1.13784 1.26527 1.24163 0.98733 0.92008 0.98793 1.20028 0.92490 0.96185 1.17383 1.19756 1.01369 0.89969 0.95823 1.21412 1.00616 0.94021 0.97089 1.21959 0.98574 0.95878 0.90324 1.60674 1.38600 1.23166 1.09590 1.18966 0.91849 0.83233 0.95680 0.97634 1.22190 0.98542 1.02233 0.97947 1.21446 1.29723 0.98541 1.05825 0.92779 1.25711 0.96806 0.96444 0.99838 1.70079 1.45209 1.08370 1.32758 0.85595 0.78004 0.77861 0.80308 1.20010 1.21103 1.19462 0.88662 0.89361 0.89656 0.78596 0.90780 0.90904 0.92176 0.92567 0.96289 0.92888 0.85316 0.94216 0.95108 0.93920 0.93030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.30 10.12 71.24 0.72 -0.58 16 2 C 0.09 1.79 7.21 41.41 0.30 2.09 16 3 N -0.47 -9.13 7.36 -48.00 -0.35 -9.48 16 4 H 0.45 5.66 8.96 -213.33 -1.91 3.75 16 5 N -0.33 -8.09 12.70 -57.02 -0.72 -8.82 16 6 C 0.05 1.10 11.96 85.24 1.02 2.12 16 7 C -0.25 -5.55 5.35 -20.15 -0.11 -5.65 16 8 C -0.03 -0.66 5.25 29.85 0.16 -0.51 16 9 C -0.09 -2.50 5.46 30.59 0.17 -2.34 16 10 C 0.06 2.13 5.48 86.30 0.47 2.60 16 11 N -0.69 -29.14 6.23 -495.47 -3.09 -32.23 16 12 C 0.21 10.79 2.44 44.17 0.11 10.90 16 13 H 0.01 0.32 7.74 -2.38 -0.02 0.31 16 14 C -0.15 -7.09 9.04 71.98 0.65 -6.44 16 15 C -0.52 -29.04 8.76 25.60 0.22 -28.82 16 16 H 0.05 3.05 7.83 -2.91 -0.02 3.03 16 17 C 0.01 0.58 5.17 84.66 0.44 1.02 16 18 N -0.92 -54.16 12.16 21.45 0.26 -53.90 16 19 Si 0.96 44.18 29.55 68.60 2.03 46.21 16 20 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 21 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 22 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 23 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.08 1.36 7.47 -2.39 -0.02 1.34 16 26 H 0.20 3.48 8.06 -2.91 -0.02 3.46 16 27 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.07 1.52 8.02 -2.38 -0.02 1.50 16 29 H 0.06 1.69 7.73 -2.39 -0.02 1.67 16 30 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.02 0.64 7.51 -2.39 -0.02 0.62 16 32 H 0.05 1.91 8.06 -2.39 -0.02 1.89 16 33 H 0.33 13.04 8.43 -89.69 -0.76 12.28 16 34 H 0.04 1.75 8.07 -2.39 -0.02 1.73 16 35 H 0.03 1.29 7.55 -2.39 -0.02 1.27 16 36 H 0.04 2.24 6.83 -2.38 -0.02 2.23 16 37 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 Total: -1.00 -66.05 308.70 0.66 -65.39 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: -1.61 Total: 18.44 kcal Atomic # 6 Polarization: -29.76 SS G_CDS: 4.15 Total: -25.61 kcal Atomic # 7 Polarization: -100.52 SS G_CDS: -3.90 Total: -104.42 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -66.05 0.66 -65.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067406030.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.435 kcal (2) G-P(sol) polarization free energy of solvation -66.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds