Wall clock time and date at job start Mon Mar 30 2020 03:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52994 * 109.46996 * 2 1 4 4 H 1.09004 * 109.47448 * 54.25521 * 3 2 1 5 5 C 1.50706 * 109.47324 * 174.25719 * 3 2 1 6 6 H 1.07997 * 119.99996 * 120.00097 * 5 3 2 7 7 C 1.37879 * 119.99492 * 300.00179 * 5 3 2 8 8 N 1.31513 * 120.00224 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 119.99434 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47253 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46777 * 120.00311 * 9 7 5 12 12 H 1.48496 * 109.46997 * 240.00109 * 9 7 5 13 13 N 1.46898 * 109.47557 * 294.25689 * 3 2 1 14 14 C 1.46901 * 111.00181 * 150.61558 * 13 3 2 15 15 H 1.08998 * 109.47232 * 327.32989 * 14 13 3 16 16 C 1.52998 * 109.47184 * 87.33096 * 14 13 3 17 17 C 1.50701 * 109.46994 * 207.32715 * 14 13 3 18 18 N 1.30502 * 125.65167 * 314.68857 * 17 14 13 19 19 C 1.34132 * 109.25428 * 179.89416 * 18 17 14 20 20 C 1.34665 * 108.02081 * 0.37568 * 19 18 17 21 21 N 1.35050 * 125.65000 * 135.00490 * 17 14 13 22 22 C 1.46502 * 126.39346 * 359.97438 * 21 17 14 23 23 H 1.08995 * 109.46564 * 176.54092 * 1 2 3 24 24 H 1.08997 * 109.46868 * 296.53960 * 1 2 3 25 25 H 1.08997 * 109.47093 * 56.54311 * 1 2 3 26 26 H 1.09001 * 109.46908 * 240.00427 * 2 1 3 27 27 H 1.08999 * 109.46978 * 120.00425 * 2 1 3 28 28 H 0.97000 * 119.99523 * 179.97438 * 8 7 5 29 29 H 1.00901 * 110.99931 * 26.66421 * 13 3 2 30 30 H 1.09002 * 109.46916 * 300.00117 * 16 14 13 31 31 H 1.09006 * 109.47291 * 59.99534 * 16 14 13 32 32 H 1.08991 * 109.47460 * 180.02562 * 16 14 13 33 33 H 1.08004 * 125.98450 * 180.11600 * 19 18 17 34 34 H 1.08006 * 126.58897 * 179.74174 * 20 19 18 35 35 H 1.08994 * 109.46739 * 90.00623 * 22 21 17 36 36 H 1.09005 * 109.46924 * 210.00411 * 22 21 17 37 37 H 1.08993 * 109.47242 * 330.00151 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5951 1.9852 0.8341 5 6 3.5404 1.4449 0.1422 6 1 4.1551 1.8862 -0.6284 7 6 4.1281 0.8838 1.2561 8 7 3.3795 0.3469 2.1946 9 14 5.9879 0.8862 1.4319 10 1 6.5961 1.5464 0.2489 11 1 6.3678 1.6271 2.6616 12 1 6.4780 -0.5124 1.5254 13 7 1.6668 2.0939 -1.2627 14 6 1.4845 3.5394 -1.0755 15 1 1.0974 3.7303 -0.0746 16 6 2.8290 4.2494 -1.2463 17 6 0.5084 4.0593 -2.0992 18 7 0.5128 3.7677 -3.3712 19 6 -0.4996 4.4075 -3.9752 20 6 -1.1512 5.1293 -3.0436 21 7 -0.5122 4.9089 -1.8534 22 6 -0.8686 5.4867 -0.5552 23 1 -0.3632 -1.0258 -0.0620 24 1 -0.3633 0.4592 0.9194 25 1 -0.3633 0.5665 -0.8574 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 3.7931 -0.0482 2.9780 29 1 0.8384 1.6728 -1.6557 30 1 3.5350 3.8734 -0.5059 31 1 3.2161 4.0585 -2.2473 32 1 2.6938 5.3219 -1.1070 33 1 -0.7461 4.3564 -5.0255 34 1 -2.0121 5.7613 -3.2048 35 1 -0.3371 6.4284 -0.4185 36 1 -1.9430 5.6676 -0.5206 37 1 -0.5911 4.7942 0.2394 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070008305.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:11 Heat of formation + Delta-G solvation = 60.192480 kcal Electronic energy + Delta-G solvation = -17405.200525 eV Core-core repulsion = 14797.619549 eV Total energy + Delta-G solvation = -2607.580976 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.83114 -36.71489 -33.81751 -33.33626 -31.61235 -29.12623 -27.94498 -26.85057 -26.36594 -22.98741 -22.25996 -21.05819 -19.45313 -19.01242 -16.89719 -16.28066 -15.56085 -14.89187 -14.74414 -14.35431 -13.65643 -13.31815 -13.18234 -12.85362 -12.64959 -12.60470 -12.29425 -12.12976 -11.39705 -11.13557 -11.13364 -10.86533 -10.71553 -10.45165 -9.84977 -9.66808 -9.62962 -9.55514 -9.36728 -9.01511 -8.31305 -8.12234 -7.20380 -5.94113 -3.96909 2.25589 2.95762 3.33707 3.42154 3.46965 3.48435 4.47837 4.73549 4.81068 4.93073 5.09244 5.27988 5.34759 5.38258 5.58156 5.79787 5.97621 6.08350 6.17899 6.19532 6.36577 6.42120 6.52390 6.73837 6.85511 6.98430 7.04787 7.11092 7.20035 7.38510 7.50619 7.80741 7.98120 8.29903 8.42066 8.50579 8.79007 9.12124 9.67681 11.11367 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.030128 B = 0.006952 C = 0.006406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.143417 B = 4026.761707 C = 4370.032768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.128 4.128 3 C 0.218 3.782 4 H 0.002 0.998 5 C -0.487 4.487 6 H 0.068 0.932 7 C 0.053 3.947 8 N -0.898 5.898 9 Si 0.892 3.108 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.286 1.286 13 N -0.665 5.665 14 C 0.182 3.818 15 H 0.045 0.955 16 C -0.131 4.131 17 C 0.215 3.785 18 N -0.471 5.471 19 C -0.033 4.033 20 C -0.075 4.075 21 N -0.463 5.463 22 C 0.070 3.930 23 H 0.037 0.963 24 H 0.041 0.959 25 H 0.033 0.967 26 H 0.043 0.957 27 H 0.101 0.899 28 H 0.258 0.742 29 H 0.326 0.674 30 H 0.086 0.914 31 H 0.062 0.938 32 H 0.033 0.967 33 H 0.165 0.835 34 H 0.168 0.832 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.268 9.068 -4.298 13.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.166 4.166 3 C 0.111 3.889 4 H 0.020 0.980 5 C -0.526 4.526 6 H 0.086 0.914 7 C -0.147 4.147 8 N -0.539 5.539 9 Si 0.721 3.279 10 H -0.197 1.197 11 H -0.214 1.214 12 H -0.212 1.212 13 N -0.299 5.299 14 C 0.070 3.930 15 H 0.062 0.938 16 C -0.189 4.189 17 C -0.048 4.048 18 N -0.188 5.188 19 C -0.182 4.182 20 C -0.207 4.207 21 N -0.146 5.146 22 C -0.073 4.073 23 H 0.057 0.943 24 H 0.060 0.940 25 H 0.052 0.948 26 H 0.061 0.939 27 H 0.119 0.881 28 H 0.068 0.932 29 H 0.145 0.855 30 H 0.104 0.896 31 H 0.081 0.919 32 H 0.052 0.948 33 H 0.183 0.817 34 H 0.186 0.814 35 H 0.094 0.906 36 H 0.101 0.899 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.083 8.585 -4.592 12.654 hybrid contribution -0.701 0.622 1.018 1.384 sum -8.784 9.207 -3.574 13.218 Atomic orbital electron populations 1.21883 0.99754 0.99554 0.99544 1.21807 0.91114 1.00454 1.03249 1.19300 0.95779 0.90036 0.83805 0.98018 1.21338 0.91186 1.35985 1.04069 0.91428 1.24972 0.97988 0.95727 0.95981 1.69883 1.34535 1.39836 1.09624 0.86524 0.85964 0.77620 0.77827 1.19652 1.21360 1.21197 1.60742 1.39485 0.99049 1.30607 1.19848 0.91339 0.91244 0.90533 0.93753 1.21815 0.96596 0.96521 1.03991 1.23941 0.91920 0.94760 0.94204 1.70336 1.20783 1.23899 1.03812 1.22340 0.95917 1.00216 0.99683 1.22577 1.03578 1.08872 0.85687 1.45402 1.24497 1.36196 1.08491 1.22034 1.02009 0.99875 0.83353 0.94343 0.94023 0.94771 0.93862 0.88094 0.93225 0.85541 0.89555 0.91918 0.94839 0.81744 0.81427 0.90595 0.89909 0.89259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 9.81 37.16 0.36 -2.61 16 2 C -0.13 -3.03 5.33 -26.73 -0.14 -3.17 16 3 C 0.22 5.35 2.03 -68.87 -0.14 5.21 16 4 H 0.00 0.06 7.32 -51.93 -0.38 -0.32 16 5 C -0.49 -13.12 7.44 -34.44 -0.26 -13.38 16 6 H 0.07 1.86 7.02 -52.49 -0.37 1.49 16 7 C 0.05 1.45 5.29 -17.82 -0.09 1.35 16 8 N -0.90 -25.15 11.29 55.43 0.63 -24.53 16 9 Si 0.89 21.30 29.54 -169.99 -5.02 16.27 16 10 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 N -0.67 -14.68 6.15 -102.17 -0.63 -15.31 16 14 C 0.18 3.55 2.99 -68.86 -0.21 3.34 16 15 H 0.04 0.86 5.94 -51.93 -0.31 0.55 16 16 C -0.13 -2.51 9.11 37.16 0.34 -2.17 16 17 C 0.21 3.85 6.37 -155.41 -0.99 2.86 16 18 N -0.47 -8.92 11.24 -10.81 -0.12 -9.04 16 19 C -0.03 -0.50 11.87 -17.81 -0.21 -0.71 16 20 C -0.07 -0.98 11.58 -16.56 -0.19 -1.17 16 21 N -0.46 -6.67 3.15 -121.28 -0.38 -7.05 16 22 C 0.07 0.73 10.93 59.85 0.65 1.38 16 23 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 24 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.03 0.64 6.41 -51.93 -0.33 0.31 16 26 H 0.04 1.04 8.14 -51.93 -0.42 0.61 16 27 H 0.10 2.66 5.94 -51.93 -0.31 2.35 16 28 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 29 H 0.33 7.05 6.05 -39.29 -0.24 6.82 16 30 H 0.09 1.82 6.22 -51.93 -0.32 1.50 16 31 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.17 2.02 8.06 -52.48 -0.42 1.60 16 34 H 0.17 1.54 8.06 -52.48 -0.42 1.11 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.09 0.97 6.92 -51.93 -0.36 0.61 16 LS Contribution 298.66 15.07 4.50 4.50 Total: -1.00 -30.35 298.66 -7.46 -37.81 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -5.56 Total: 6.41 kcal Atomic # 6 Polarization: -8.18 SS G_CDS: -0.87 Total: -9.05 kcal Atomic # 7 Polarization: -55.43 SS G_CDS: -0.51 Total: -55.94 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.35 -7.46 -37.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070008305.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.001 kcal (2) G-P(sol) polarization free energy of solvation -30.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds