Wall clock time and date at job start Mon Mar 30 2020 03:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52994 * 109.46996 * 2 1 4 4 H 1.09004 * 109.47448 * 54.25521 * 3 2 1 5 5 C 1.50706 * 109.47324 * 174.25719 * 3 2 1 6 6 H 1.07997 * 119.99996 * 120.00097 * 5 3 2 7 7 C 1.37879 * 119.99492 * 300.00179 * 5 3 2 8 8 N 1.31513 * 120.00224 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 119.99434 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47253 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46777 * 120.00311 * 9 7 5 12 12 H 1.48496 * 109.46997 * 240.00109 * 9 7 5 13 13 N 1.46898 * 109.47557 * 294.25689 * 3 2 1 14 14 C 1.46901 * 111.00181 * 150.61558 * 13 3 2 15 15 H 1.08998 * 109.47232 * 327.32989 * 14 13 3 16 16 C 1.52998 * 109.47184 * 87.33096 * 14 13 3 17 17 C 1.50701 * 109.46994 * 207.32715 * 14 13 3 18 18 N 1.30502 * 125.65167 * 314.68857 * 17 14 13 19 19 C 1.34132 * 109.25428 * 179.89416 * 18 17 14 20 20 C 1.34665 * 108.02081 * 0.37568 * 19 18 17 21 21 N 1.35050 * 125.65000 * 135.00490 * 17 14 13 22 22 C 1.46502 * 126.39346 * 359.97438 * 21 17 14 23 23 H 1.08995 * 109.46564 * 176.54092 * 1 2 3 24 24 H 1.08997 * 109.46868 * 296.53960 * 1 2 3 25 25 H 1.08997 * 109.47093 * 56.54311 * 1 2 3 26 26 H 1.09001 * 109.46908 * 240.00427 * 2 1 3 27 27 H 1.08999 * 109.46978 * 120.00425 * 2 1 3 28 28 H 0.97000 * 119.99523 * 179.97438 * 8 7 5 29 29 H 1.00901 * 110.99931 * 26.66421 * 13 3 2 30 30 H 1.09002 * 109.46916 * 300.00117 * 16 14 13 31 31 H 1.09006 * 109.47291 * 59.99534 * 16 14 13 32 32 H 1.08991 * 109.47460 * 180.02562 * 16 14 13 33 33 H 1.08004 * 125.98450 * 180.11600 * 19 18 17 34 34 H 1.08006 * 126.58897 * 179.74174 * 20 19 18 35 35 H 1.08994 * 109.46739 * 90.00623 * 22 21 17 36 36 H 1.09005 * 109.46924 * 210.00411 * 22 21 17 37 37 H 1.08993 * 109.47242 * 330.00151 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5951 1.9852 0.8341 5 6 3.5404 1.4449 0.1422 6 1 4.1551 1.8862 -0.6284 7 6 4.1281 0.8838 1.2561 8 7 3.3795 0.3469 2.1946 9 14 5.9879 0.8862 1.4319 10 1 6.5961 1.5464 0.2489 11 1 6.3678 1.6271 2.6616 12 1 6.4780 -0.5124 1.5254 13 7 1.6668 2.0939 -1.2627 14 6 1.4845 3.5394 -1.0755 15 1 1.0974 3.7303 -0.0746 16 6 2.8290 4.2494 -1.2463 17 6 0.5084 4.0593 -2.0992 18 7 0.5128 3.7677 -3.3712 19 6 -0.4996 4.4075 -3.9752 20 6 -1.1512 5.1293 -3.0436 21 7 -0.5122 4.9089 -1.8534 22 6 -0.8686 5.4867 -0.5552 23 1 -0.3632 -1.0258 -0.0620 24 1 -0.3633 0.4592 0.9194 25 1 -0.3633 0.5665 -0.8574 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 3.7931 -0.0482 2.9780 29 1 0.8384 1.6728 -1.6557 30 1 3.5350 3.8734 -0.5059 31 1 3.2161 4.0585 -2.2473 32 1 2.6938 5.3219 -1.1070 33 1 -0.7461 4.3564 -5.0255 34 1 -2.0121 5.7613 -3.2048 35 1 -0.3371 6.4284 -0.4185 36 1 -1.9430 5.6676 -0.5206 37 1 -0.5911 4.7942 0.2394 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070008305.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:11 Heat of formation + Delta-G solvation = 40.607196 kcal Electronic energy + Delta-G solvation = -17406.049806 eV Core-core repulsion = 14797.619549 eV Total energy + Delta-G solvation = -2608.430257 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.99077 -38.48291 -35.13549 -34.86985 -33.54434 -30.63213 -29.34655 -28.35579 -27.77322 -24.81747 -23.77380 -22.21908 -21.29447 -20.33597 -18.35926 -18.03597 -16.75576 -16.62302 -16.33996 -15.79060 -15.33708 -14.75657 -14.35218 -14.31629 -14.12525 -13.81117 -13.70044 -13.46812 -13.08791 -13.00714 -12.85650 -12.63630 -12.49151 -12.18377 -11.81970 -11.53491 -11.45981 -10.99227 -10.78193 -10.50320 -10.38734 -9.27136 -9.00881 -8.02496 -6.11992 1.13310 1.42297 1.45690 1.57204 1.92703 2.25949 2.47926 3.22570 3.47966 3.55790 3.95568 4.05620 4.26049 4.37987 4.45771 4.52071 4.57759 4.62123 4.66046 4.68601 4.79763 4.85996 5.07181 5.14214 5.18274 5.33235 5.38416 5.48166 5.60981 5.79325 5.91434 5.93499 6.24047 6.40908 6.54743 6.93898 7.00883 7.29403 7.56000 9.01175 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.030128 B = 0.006952 C = 0.006406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.143417 B = 4026.761707 C = 4370.032768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.124 4.124 3 C 0.227 3.773 4 H -0.022 1.022 5 C -0.500 4.500 6 H 0.054 0.946 7 C 0.011 3.989 8 N -0.921 5.921 9 Si 0.950 3.050 10 H -0.272 1.272 11 H -0.281 1.281 12 H -0.283 1.283 13 N -0.671 5.671 14 C 0.185 3.815 15 H 0.045 0.955 16 C -0.121 4.121 17 C 0.184 3.816 18 N -0.509 5.509 19 C -0.063 4.063 20 C -0.046 4.046 21 N -0.459 5.459 22 C 0.062 3.938 23 H 0.058 0.942 24 H 0.041 0.959 25 H 0.044 0.956 26 H 0.033 0.967 27 H 0.073 0.927 28 H 0.259 0.741 29 H 0.327 0.673 30 H 0.061 0.939 31 H 0.046 0.954 32 H 0.059 0.941 33 H 0.186 0.814 34 H 0.215 0.785 35 H 0.092 0.908 36 H 0.117 0.883 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.736 10.474 -4.713 15.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.163 4.163 3 C 0.119 3.881 4 H -0.005 1.005 5 C -0.539 4.539 6 H 0.073 0.927 7 C -0.187 4.187 8 N -0.562 5.562 9 Si 0.777 3.223 10 H -0.196 1.196 11 H -0.207 1.207 12 H -0.209 1.209 13 N -0.304 5.304 14 C 0.074 3.926 15 H 0.062 0.938 16 C -0.180 4.180 17 C -0.078 4.078 18 N -0.228 5.228 19 C -0.211 4.211 20 C -0.180 4.180 21 N -0.141 5.141 22 C -0.079 4.079 23 H 0.077 0.923 24 H 0.060 0.940 25 H 0.063 0.937 26 H 0.052 0.948 27 H 0.092 0.908 28 H 0.068 0.932 29 H 0.146 0.854 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.203 0.797 34 H 0.232 0.768 35 H 0.111 0.889 36 H 0.135 0.865 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.555 10.005 -4.994 14.709 hybrid contribution -0.318 0.258 1.098 1.172 sum -9.873 10.263 -3.895 14.764 Atomic orbital electron populations 1.21725 0.96609 1.01121 0.99967 1.21650 0.93955 0.99377 1.01294 1.19059 0.94467 0.90471 0.84057 1.00456 1.21528 0.92540 1.35924 1.03881 0.92746 1.25620 1.01815 0.95495 0.95764 1.69993 1.35949 1.40289 1.09931 0.85619 0.81360 0.77553 0.77772 1.19639 1.20675 1.20936 1.60623 1.39831 1.00797 1.29154 1.19674 0.92040 0.89534 0.91391 0.93771 1.21679 0.96124 0.98089 1.02058 1.23312 0.93558 0.97323 0.93649 1.70215 1.22678 1.25241 1.04696 1.22840 0.95877 1.01055 1.01296 1.23287 1.03261 1.07129 0.84278 1.45605 1.23269 1.35039 1.10229 1.22345 1.04460 0.99949 0.81174 0.92256 0.94026 0.93741 0.94845 0.90833 0.93162 0.85402 0.92053 0.93436 0.92227 0.79676 0.76791 0.88906 0.86496 0.90382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.33 9.81 71.98 0.71 -4.63 16 2 C -0.12 -5.99 5.33 30.59 0.16 -5.82 16 3 C 0.23 11.46 2.03 44.17 0.09 11.55 16 4 H -0.02 -1.20 7.32 -2.38 -0.02 -1.22 16 5 C -0.50 -27.68 7.44 25.60 0.19 -27.49 16 6 H 0.05 3.10 7.02 -2.91 -0.02 3.08 16 7 C 0.01 0.60 5.29 84.66 0.45 1.04 16 8 N -0.92 -52.45 11.29 21.45 0.24 -52.21 16 9 Si 0.95 44.30 29.54 68.60 2.03 46.33 16 10 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 11 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 12 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 13 N -0.67 -30.23 6.15 -477.16 -2.93 -33.17 16 14 C 0.19 7.28 2.99 44.17 0.13 7.41 16 15 H 0.04 1.73 5.94 -2.39 -0.01 1.71 16 16 C -0.12 -4.73 9.11 71.98 0.66 -4.07 16 17 C 0.18 6.45 6.37 138.13 0.88 7.33 16 18 N -0.51 -18.96 11.24 -188.12 -2.11 -21.07 16 19 C -0.06 -1.77 11.87 83.52 0.99 -0.78 16 20 C -0.05 -1.04 11.58 83.09 0.96 -0.07 16 21 N -0.46 -12.03 3.15 -537.61 -1.69 -13.72 16 22 C 0.06 1.09 10.93 127.77 1.40 2.49 16 23 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 24 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.04 1.63 6.41 -2.39 -0.02 1.61 16 26 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.07 3.97 5.94 -2.39 -0.01 3.96 16 28 H 0.26 14.08 8.31 -92.71 -0.77 13.31 16 29 H 0.33 14.33 6.05 -89.69 -0.54 13.78 16 30 H 0.06 2.67 6.22 -2.39 -0.01 2.66 16 31 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 32 H 0.06 1.95 8.14 -2.39 -0.02 1.94 16 33 H 0.19 4.13 8.06 -2.91 -0.02 4.11 16 34 H 0.22 2.66 8.06 -2.91 -0.02 2.64 16 35 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.12 1.27 8.14 -2.38 -0.02 1.25 16 37 H 0.08 1.57 6.92 -2.39 -0.02 1.56 16 Total: -1.00 -66.86 298.66 2.65 -64.21 By element: Atomic # 1 Polarization: 22.16 SS G_CDS: 0.51 Total: 22.67 kcal Atomic # 6 Polarization: -19.66 SS G_CDS: 6.61 Total: -13.04 kcal Atomic # 7 Polarization: -113.66 SS G_CDS: -6.50 Total: -120.16 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -66.86 2.65 -64.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070008305.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.816 kcal (2) G-P(sol) polarization free energy of solvation -66.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds