Wall clock time and date at job start Mon Mar 30 2020 03:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30503 * 125.65303 * 2 1 4 4 C 1.34129 * 109.25598 * 180.29103 * 3 2 1 5 5 C 1.34666 * 108.02134 * 359.72190 * 4 3 2 6 6 N 1.35049 * 125.64760 * 179.81874 * 2 1 3 7 7 C 1.46498 * 126.39984 * 359.97438 * 6 2 1 8 8 C 1.53000 * 109.47217 * 84.70933 * 7 6 2 9 9 N 1.46497 * 109.47110 * 180.02562 * 8 7 6 10 10 C 1.36939 * 120.00261 * 89.99545 * 9 8 7 11 11 H 1.08000 * 119.99998 * 217.15971 * 10 9 8 12 12 C 1.38814 * 119.99742 * 37.16755 * 10 9 8 13 13 N 1.31615 * 120.00052 * 21.24012 * 12 10 9 14 14 Si 1.86802 * 119.99672 * 201.24632 * 12 10 9 15 15 H 1.48501 * 109.47279 * 89.99623 * 14 12 10 16 16 H 1.48499 * 109.46693 * 209.99610 * 14 12 10 17 17 H 1.48496 * 109.46944 * 329.99161 * 14 12 10 18 18 C 1.46501 * 119.99955 * 269.72270 * 9 8 7 19 19 C 1.53002 * 109.47037 * 114.92162 * 18 9 8 20 20 C 1.52999 * 109.47501 * 234.92793 * 18 9 8 21 21 H 1.09004 * 109.47171 * 270.17522 * 1 2 3 22 22 H 1.08998 * 109.46692 * 30.17804 * 1 2 3 23 23 H 1.09001 * 109.46911 * 150.17354 * 1 2 3 24 24 H 1.07998 * 125.98625 * 179.72710 * 4 3 2 25 25 H 1.08001 * 126.59132 * 179.97438 * 5 4 3 26 26 H 1.09000 * 109.46686 * 324.70838 * 7 6 2 27 27 H 1.08996 * 109.47343 * 204.71003 * 7 6 2 28 28 H 1.08991 * 109.47380 * 60.00073 * 8 7 6 29 29 H 1.09003 * 109.46740 * 299.99982 * 8 7 6 30 30 H 0.97000 * 119.99721 * 180.02562 * 13 12 10 31 31 H 1.09001 * 109.47009 * 354.92496 * 18 9 8 32 32 H 1.09001 * 109.46966 * 63.45595 * 19 18 9 33 33 H 1.09005 * 109.46930 * 183.44647 * 19 18 9 34 34 H 1.08990 * 109.47565 * 303.45216 * 19 18 9 35 35 H 1.08998 * 109.47318 * 61.47137 * 20 18 9 36 36 H 1.08994 * 109.47286 * 181.47530 * 20 18 9 37 37 H 1.09003 * 109.46972 * 301.47111 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2677 1.0604 0.0000 4 6 3.5544 0.6818 -0.0064 5 6 3.5926 -0.6643 -0.0044 6 7 2.2941 -1.0974 0.0035 7 6 1.8425 -2.4911 0.0084 8 6 1.5582 -2.9402 -1.4263 9 7 1.1061 -4.3336 -1.4213 10 6 -0.2284 -4.6201 -1.3105 11 1 -0.5511 -5.4759 -0.7361 12 6 -1.1663 -3.8107 -1.9367 13 7 -0.8074 -3.0483 -2.9477 14 14 -2.9378 -3.8034 -1.3441 15 1 -3.1054 -2.7635 -0.2973 16 1 -3.8402 -3.5067 -2.4855 17 1 -3.2760 -5.1341 -0.7786 18 6 2.0811 -5.4205 -1.5408 19 6 2.0914 -6.2407 -0.2492 20 6 1.6975 -6.3231 -2.7152 21 1 -0.3634 0.0031 1.0277 22 1 -0.3632 0.8884 -0.5166 23 1 -0.3633 -0.8916 -0.5111 24 1 4.4098 1.3410 -0.0122 25 1 4.4776 -1.2833 -0.0086 26 1 0.9328 -2.5761 0.6028 27 1 2.6187 -3.1230 0.4399 28 1 2.4679 -2.8552 -2.0206 29 1 0.7819 -2.3082 -1.8577 30 1 -1.4627 -2.4825 -3.3850 31 1 3.0726 -5.0018 -1.7132 32 1 1.1174 -6.7095 -0.1088 33 1 2.8595 -7.0114 -0.3144 34 1 2.3046 -5.5858 0.5955 35 1 1.7157 -5.7448 -3.6389 36 1 2.4080 -7.1464 -2.7879 37 1 0.6954 -6.7210 -2.5553 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080216284.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:33 Heat of formation + Delta-G solvation = 69.544859 kcal Electronic energy + Delta-G solvation = -17579.227485 eV Core-core repulsion = 14972.052059 eV Total energy + Delta-G solvation = -2607.175426 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.54461 -36.85875 -33.82126 -32.43794 -31.20724 -30.16208 -27.45412 -26.33194 -26.26133 -24.39147 -21.93240 -20.83423 -19.67310 -19.09671 -16.64298 -16.25027 -15.26486 -14.77952 -14.28948 -14.19571 -13.76055 -13.28169 -12.82253 -12.65409 -12.58621 -12.41481 -12.25458 -11.80815 -11.70945 -11.44047 -11.22441 -11.14704 -10.85387 -10.60897 -10.37856 -10.09924 -9.92451 -9.72439 -9.46892 -9.04710 -8.62178 -7.86408 -6.73438 -5.92031 -3.52078 2.57032 3.26097 3.35435 3.36714 3.40154 3.59804 4.36265 4.99582 5.12626 5.22111 5.38249 5.45627 5.75426 5.81744 5.88980 5.91738 5.98783 6.07678 6.18847 6.24479 6.27401 6.33904 6.37168 6.55130 6.63162 6.67706 6.68053 6.95179 7.08252 7.21266 7.24776 7.47507 7.71716 7.75534 8.37807 8.59841 9.03472 9.65546 10.23723 11.07791 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.019536 B = 0.009873 C = 0.007247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.889588 B = 2835.372656 C = 3862.479377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.211 3.789 3 N -0.507 5.507 4 C -0.041 4.041 5 C -0.064 4.064 6 N -0.438 5.438 7 C 0.079 3.921 8 C 0.137 3.863 9 N -0.574 5.574 10 C -0.262 4.262 11 H 0.064 0.936 12 C 0.015 3.985 13 N -0.882 5.882 14 Si 0.892 3.108 15 H -0.283 1.283 16 H -0.290 1.290 17 H -0.277 1.277 18 C 0.160 3.840 19 C -0.155 4.155 20 C -0.145 4.145 21 H 0.071 0.929 22 H 0.083 0.917 23 H 0.086 0.914 24 H 0.162 0.838 25 H 0.166 0.834 26 H 0.088 0.912 27 H 0.072 0.928 28 H 0.029 0.971 29 H 0.105 0.895 30 H 0.257 0.743 31 H 0.045 0.955 32 H 0.053 0.947 33 H 0.037 0.963 34 H 0.042 0.958 35 H 0.048 0.952 36 H 0.031 0.969 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.443 -0.064 4.755 7.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.052 4.052 3 N -0.227 5.227 4 C -0.190 4.190 5 C -0.199 4.199 6 N -0.119 5.119 7 C -0.046 4.046 8 C 0.009 3.991 9 N -0.294 5.294 10 C -0.391 4.391 11 H 0.082 0.918 12 C -0.186 4.186 13 N -0.524 5.524 14 Si 0.721 3.279 15 H -0.210 1.210 16 H -0.216 1.216 17 H -0.202 1.202 18 C 0.054 3.946 19 C -0.214 4.214 20 C -0.203 4.203 21 H 0.090 0.910 22 H 0.101 0.899 23 H 0.105 0.895 24 H 0.179 0.821 25 H 0.183 0.817 26 H 0.106 0.894 27 H 0.091 0.909 28 H 0.047 0.953 29 H 0.122 0.878 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.050 0.950 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.996 0.645 4.625 6.838 hybrid contribution -0.451 -0.868 0.259 1.012 sum 4.544 -0.224 4.884 6.675 Atomic orbital electron populations 1.20210 0.85319 1.04657 1.02824 1.23198 0.95633 0.81488 1.04865 1.70179 1.02130 1.28729 1.21646 1.22120 0.94756 0.92696 1.09466 1.22597 0.87521 0.96627 1.13142 1.45666 1.05991 1.08429 1.51854 1.23087 1.00377 0.76579 1.04542 1.21232 0.99562 0.88467 0.89872 1.43811 1.02694 0.98864 1.84074 1.18962 0.81230 1.13123 1.25834 0.91834 1.25203 0.97921 1.00530 0.94920 1.69982 1.34185 1.28756 1.19434 0.86470 0.84969 0.78279 0.78207 1.20974 1.21627 1.20226 1.20473 0.92031 0.89481 0.92639 1.22212 1.00689 0.99326 0.99194 1.22010 1.00892 0.98215 0.99217 0.91002 0.89852 0.89510 0.82098 0.81704 0.89395 0.90931 0.95298 0.87781 0.93306 0.93723 0.92739 0.94354 0.93853 0.93278 0.95016 0.92211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.23 10.04 36.01 0.36 -0.87 16 2 C 0.21 4.04 7.90 -155.41 -1.23 2.81 16 3 N -0.51 -9.92 11.25 -10.82 -0.12 -10.05 16 4 C -0.04 -0.71 11.87 -17.81 -0.21 -0.92 16 5 C -0.06 -1.06 11.58 -16.56 -0.19 -1.25 16 6 N -0.44 -8.05 2.75 -113.91 -0.31 -8.36 16 7 C 0.08 1.45 6.00 -4.04 -0.02 1.43 16 8 C 0.14 2.95 5.61 -4.04 -0.02 2.93 16 9 N -0.57 -12.83 2.37 -165.66 -0.39 -13.22 16 10 C -0.26 -6.44 8.04 -15.06 -0.12 -6.56 16 11 H 0.06 1.58 7.16 -52.49 -0.38 1.21 16 12 C 0.02 0.39 4.96 -17.43 -0.09 0.30 16 13 N -0.88 -23.58 11.43 55.49 0.63 -22.94 16 14 Si 0.89 20.07 29.60 -169.99 -5.03 15.04 16 15 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 16 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 17 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 18 C 0.16 3.11 3.37 -67.93 -0.23 2.88 16 19 C -0.15 -2.64 9.19 37.16 0.34 -2.30 16 20 C -0.14 -2.78 9.11 37.16 0.34 -2.44 16 21 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 22 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 23 H 0.09 1.65 7.33 -51.93 -0.38 1.27 16 24 H 0.16 2.21 8.06 -52.49 -0.42 1.79 16 25 H 0.17 2.19 8.06 -52.49 -0.42 1.77 16 26 H 0.09 1.69 7.94 -51.93 -0.41 1.28 16 27 H 0.07 1.24 8.13 -51.93 -0.42 0.82 16 28 H 0.03 0.63 7.88 -51.93 -0.41 0.22 16 29 H 0.10 2.58 4.97 -51.93 -0.26 2.33 16 30 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 31 H 0.04 0.83 7.76 -51.93 -0.40 0.42 16 32 H 0.05 0.98 7.34 -51.93 -0.38 0.60 16 33 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 1.24 7.50 -51.93 -0.39 0.85 16 LS Contribution 305.67 15.07 4.61 4.61 Total: -1.00 -27.62 305.67 -7.64 -35.26 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -5.95 Total: 3.64 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: -1.07 Total: -3.98 kcal Atomic # 7 Polarization: -54.37 SS G_CDS: -0.19 Total: -54.56 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.03 Total: 15.04 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -27.62 -7.64 -35.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080216284.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.803 kcal (2) G-P(sol) polarization free energy of solvation -27.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds