Wall clock time and date at job start Mon Mar 30 2020 03:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30503 * 125.65303 * 2 1 4 4 C 1.34129 * 109.25598 * 180.29103 * 3 2 1 5 5 C 1.34666 * 108.02134 * 359.72190 * 4 3 2 6 6 N 1.35049 * 125.64760 * 179.81874 * 2 1 3 7 7 C 1.46498 * 126.39984 * 359.97438 * 6 2 1 8 8 C 1.53000 * 109.47217 * 84.70933 * 7 6 2 9 9 N 1.46497 * 109.47110 * 180.02562 * 8 7 6 10 10 C 1.36939 * 120.00261 * 89.99545 * 9 8 7 11 11 H 1.08000 * 119.99998 * 217.15971 * 10 9 8 12 12 C 1.38814 * 119.99742 * 37.16755 * 10 9 8 13 13 N 1.31615 * 120.00052 * 21.24012 * 12 10 9 14 14 Si 1.86802 * 119.99672 * 201.24632 * 12 10 9 15 15 H 1.48501 * 109.47279 * 89.99623 * 14 12 10 16 16 H 1.48499 * 109.46693 * 209.99610 * 14 12 10 17 17 H 1.48496 * 109.46944 * 329.99161 * 14 12 10 18 18 C 1.46501 * 119.99955 * 269.72270 * 9 8 7 19 19 C 1.53002 * 109.47037 * 114.92162 * 18 9 8 20 20 C 1.52999 * 109.47501 * 234.92793 * 18 9 8 21 21 H 1.09004 * 109.47171 * 270.17522 * 1 2 3 22 22 H 1.08998 * 109.46692 * 30.17804 * 1 2 3 23 23 H 1.09001 * 109.46911 * 150.17354 * 1 2 3 24 24 H 1.07998 * 125.98625 * 179.72710 * 4 3 2 25 25 H 1.08001 * 126.59132 * 179.97438 * 5 4 3 26 26 H 1.09000 * 109.46686 * 324.70838 * 7 6 2 27 27 H 1.08996 * 109.47343 * 204.71003 * 7 6 2 28 28 H 1.08991 * 109.47380 * 60.00073 * 8 7 6 29 29 H 1.09003 * 109.46740 * 299.99982 * 8 7 6 30 30 H 0.97000 * 119.99721 * 180.02562 * 13 12 10 31 31 H 1.09001 * 109.47009 * 354.92496 * 18 9 8 32 32 H 1.09001 * 109.46966 * 63.45595 * 19 18 9 33 33 H 1.09005 * 109.46930 * 183.44647 * 19 18 9 34 34 H 1.08990 * 109.47565 * 303.45216 * 19 18 9 35 35 H 1.08998 * 109.47318 * 61.47137 * 20 18 9 36 36 H 1.08994 * 109.47286 * 181.47530 * 20 18 9 37 37 H 1.09003 * 109.46972 * 301.47111 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2677 1.0604 0.0000 4 6 3.5544 0.6818 -0.0064 5 6 3.5926 -0.6643 -0.0044 6 7 2.2941 -1.0974 0.0035 7 6 1.8425 -2.4911 0.0084 8 6 1.5582 -2.9402 -1.4263 9 7 1.1061 -4.3336 -1.4213 10 6 -0.2284 -4.6201 -1.3105 11 1 -0.5511 -5.4759 -0.7361 12 6 -1.1663 -3.8107 -1.9367 13 7 -0.8074 -3.0483 -2.9477 14 14 -2.9378 -3.8034 -1.3441 15 1 -3.1054 -2.7635 -0.2973 16 1 -3.8402 -3.5067 -2.4855 17 1 -3.2760 -5.1341 -0.7786 18 6 2.0811 -5.4205 -1.5408 19 6 2.0914 -6.2407 -0.2492 20 6 1.6975 -6.3231 -2.7152 21 1 -0.3634 0.0031 1.0277 22 1 -0.3632 0.8884 -0.5166 23 1 -0.3633 -0.8916 -0.5111 24 1 4.4098 1.3410 -0.0122 25 1 4.4776 -1.2833 -0.0086 26 1 0.9328 -2.5761 0.6028 27 1 2.6187 -3.1230 0.4399 28 1 2.4679 -2.8552 -2.0206 29 1 0.7819 -2.3082 -1.8577 30 1 -1.4627 -2.4825 -3.3850 31 1 3.0726 -5.0018 -1.7132 32 1 1.1174 -6.7095 -0.1088 33 1 2.8595 -7.0114 -0.3144 34 1 2.3046 -5.5858 0.5955 35 1 1.7157 -5.7448 -3.6389 36 1 2.4080 -7.1464 -2.7879 37 1 0.6954 -6.7210 -2.5553 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080216284.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:33 Heat of formation + Delta-G solvation = 55.982187 kcal Electronic energy + Delta-G solvation = -17579.815607 eV Core-core repulsion = 14972.052059 eV Total energy + Delta-G solvation = -2607.763548 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.92839 -38.52301 -35.29954 -34.22697 -32.57340 -31.82070 -29.10193 -27.75257 -27.68661 -26.14214 -23.54521 -22.18856 -21.34654 -20.53189 -18.33864 -17.74845 -16.97137 -16.34206 -15.89413 -15.77898 -15.25831 -14.73412 -14.38403 -14.19287 -14.05323 -13.78822 -13.68033 -13.30036 -13.22820 -12.95232 -12.89385 -12.80175 -12.56113 -12.30186 -12.04159 -11.78587 -11.59555 -11.33120 -10.90173 -10.53935 -10.50307 -9.20590 -8.56606 -7.81441 -5.44382 1.19486 1.46361 1.51186 1.56545 1.98452 2.22647 2.52289 3.26530 3.58203 3.68026 3.92044 4.06438 4.32113 4.39550 4.48887 4.54055 4.58122 4.64601 4.66943 4.73594 4.90881 4.94883 4.97140 4.99535 5.14340 5.18813 5.20340 5.52919 5.59931 5.64162 5.67992 5.80337 5.95870 6.33188 6.48772 7.17039 7.21731 7.84904 8.38060 9.14376 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.019536 B = 0.009873 C = 0.007247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.889588 B = 2835.372656 C = 3862.479377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.187 3.813 3 N -0.531 5.531 4 C -0.054 4.054 5 C -0.060 4.060 6 N -0.446 5.446 7 C 0.098 3.902 8 C 0.144 3.856 9 N -0.587 5.587 10 C -0.254 4.254 11 H 0.060 0.940 12 C -0.027 4.027 13 N -0.912 5.912 14 Si 0.941 3.059 15 H -0.278 1.278 16 H -0.301 1.301 17 H -0.272 1.272 18 C 0.151 3.849 19 C -0.143 4.143 20 C -0.137 4.137 21 H 0.089 0.911 22 H 0.088 0.912 23 H 0.063 0.937 24 H 0.191 0.809 25 H 0.200 0.800 26 H 0.078 0.922 27 H 0.095 0.905 28 H 0.023 0.977 29 H 0.071 0.929 30 H 0.250 0.750 31 H 0.057 0.943 32 H 0.039 0.961 33 H 0.067 0.933 34 H 0.047 0.953 35 H 0.023 0.977 36 H 0.066 0.934 37 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.916 -0.762 6.027 9.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.075 4.075 3 N -0.251 5.251 4 C -0.201 4.201 5 C -0.194 4.194 6 N -0.127 5.127 7 C -0.026 4.026 8 C 0.016 3.984 9 N -0.308 5.308 10 C -0.385 4.385 11 H 0.078 0.922 12 C -0.225 4.225 13 N -0.556 5.556 14 Si 0.770 3.230 15 H -0.204 1.204 16 H -0.228 1.228 17 H -0.197 1.197 18 C 0.046 3.954 19 C -0.202 4.202 20 C -0.196 4.196 21 H 0.108 0.892 22 H 0.107 0.893 23 H 0.081 0.919 24 H 0.208 0.792 25 H 0.217 0.783 26 H 0.096 0.904 27 H 0.113 0.887 28 H 0.041 0.959 29 H 0.089 0.911 30 H 0.059 0.941 31 H 0.076 0.924 32 H 0.058 0.942 33 H 0.086 0.914 34 H 0.066 0.934 35 H 0.042 0.958 36 H 0.085 0.915 37 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 6.488 -0.061 5.919 8.783 hybrid contribution -0.804 -0.663 -0.162 1.054 sum 5.685 -0.724 5.757 8.123 Atomic orbital electron populations 1.20157 0.84827 1.03697 1.03669 1.23486 0.96323 0.81905 1.05792 1.70166 1.03485 1.29232 1.22243 1.22703 0.94706 0.93658 1.09070 1.23211 0.87662 0.97039 1.11480 1.45712 1.06786 1.08024 1.52209 1.22699 1.00765 0.77127 1.02029 1.21003 0.97974 0.87876 0.91559 1.43995 1.02608 0.99801 1.84357 1.19076 0.82474 1.12379 1.24551 0.92213 1.25717 1.00638 1.00904 0.95237 1.70107 1.34713 1.29934 1.20854 0.85685 0.81599 0.78368 0.77375 1.20449 1.22774 1.19705 1.20713 0.91783 0.89004 0.93923 1.22063 1.00896 0.99598 0.97677 1.21933 1.00702 0.98906 0.98018 0.89237 0.89283 0.91855 0.79168 0.78299 0.90400 0.88720 0.95892 0.91077 0.94080 0.92436 0.94213 0.91384 0.93366 0.95796 0.91515 0.94275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.25 10.04 71.24 0.72 -1.54 16 2 C 0.19 7.07 7.90 138.13 1.09 8.17 16 3 N -0.53 -20.23 11.25 -188.13 -2.12 -22.35 16 4 C -0.05 -1.71 11.87 83.52 0.99 -0.72 16 5 C -0.06 -1.83 11.58 83.08 0.96 -0.87 16 6 N -0.45 -15.75 2.75 -514.29 -1.42 -17.16 16 7 C 0.10 3.51 6.00 86.38 0.52 4.02 16 8 C 0.14 6.17 5.61 86.38 0.48 6.66 16 9 N -0.59 -25.88 2.37 -678.04 -1.61 -27.48 16 10 C -0.25 -12.50 8.04 84.03 0.68 -11.82 16 11 H 0.06 2.96 7.16 -2.91 -0.02 2.94 16 12 C -0.03 -1.38 4.96 84.86 0.42 -0.96 16 13 N -0.91 -50.12 11.43 21.65 0.25 -49.87 16 14 Si 0.94 41.74 29.60 68.60 2.03 43.77 16 15 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 16 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 17 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 18 C 0.15 5.58 3.37 44.99 0.15 5.73 16 19 C -0.14 -4.46 9.19 71.98 0.66 -3.79 16 20 C -0.14 -5.09 9.11 71.98 0.66 -4.44 16 21 H 0.09 2.69 8.14 -2.38 -0.02 2.67 16 22 H 0.09 2.89 8.14 -2.39 -0.02 2.87 16 23 H 0.06 2.48 7.33 -2.39 -0.02 2.46 16 24 H 0.19 4.68 8.06 -2.91 -0.02 4.66 16 25 H 0.20 4.49 8.06 -2.91 -0.02 4.47 16 26 H 0.08 2.94 7.94 -2.39 -0.02 2.92 16 27 H 0.09 2.96 8.13 -2.39 -0.02 2.94 16 28 H 0.02 0.98 7.88 -2.39 -0.02 0.97 16 29 H 0.07 3.62 4.97 -2.39 -0.01 3.61 16 30 H 0.25 13.54 8.31 -92.71 -0.77 12.77 16 31 H 0.06 1.97 7.76 -2.39 -0.02 1.96 16 32 H 0.04 1.34 7.34 -2.39 -0.02 1.32 16 33 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 34 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.04 1.59 7.50 -2.39 -0.02 1.57 16 Total: -1.00 -59.37 305.67 5.49 -53.88 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: 1.03 Total: 18.77 kcal Atomic # 6 Polarization: -6.88 SS G_CDS: 7.33 Total: 0.44 kcal Atomic # 7 Polarization: -111.97 SS G_CDS: -4.89 Total: -116.86 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Total: -59.37 5.49 -53.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080216284.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.859 kcal (2) G-P(sol) polarization free energy of solvation -59.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds