Wall clock time and date at job start Mon Mar 30 2020 03:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.46711 * 2 1 4 4 H 1.09008 * 109.46926 * 174.96951 * 3 2 1 5 5 C 1.50700 * 109.47217 * 54.97254 * 3 2 1 6 6 H 1.08001 * 120.00165 * 239.99992 * 5 3 2 7 7 C 1.37874 * 119.99769 * 59.99758 * 5 3 2 8 8 N 1.31521 * 120.00319 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99971 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47069 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47157 * 120.00083 * 9 7 5 12 12 H 1.48502 * 109.47374 * 240.00145 * 9 7 5 13 13 N 1.46899 * 109.47504 * 294.96972 * 3 2 1 14 14 C 1.46895 * 111.00116 * 274.24729 * 13 3 2 15 15 C 1.50703 * 109.47130 * 183.67994 * 14 13 3 16 16 C 1.34668 * 126.59303 * 95.02408 * 15 14 13 17 17 N 1.34124 * 108.02438 * 179.97438 * 16 15 14 18 18 C 1.30505 * 109.25540 * 359.97438 * 17 16 15 19 19 N 1.35047 * 108.69526 * 359.77248 * 18 17 16 20 20 C 1.46505 * 126.39524 * 180.26888 * 19 18 17 21 21 C 1.53003 * 109.46972 * 265.11874 * 20 19 18 22 22 H 1.08998 * 109.47645 * 54.30473 * 1 2 3 23 23 H 1.08997 * 109.47595 * 294.29879 * 1 2 3 24 24 H 1.09007 * 109.46966 * 174.29788 * 1 2 3 25 25 H 1.08998 * 109.47266 * 120.00196 * 2 1 3 26 26 H 1.09006 * 109.47383 * 240.00529 * 2 1 3 27 27 H 0.97000 * 119.99759 * 180.02562 * 8 7 5 28 28 H 1.00892 * 111.00236 * 150.28823 * 13 3 2 29 29 H 1.09002 * 109.47243 * 303.67766 * 14 13 3 30 30 H 1.09001 * 109.47481 * 63.67735 * 14 13 3 31 31 H 1.08002 * 125.98873 * 359.95905 * 16 15 14 32 32 H 1.07997 * 125.65189 * 179.97438 * 18 17 16 33 33 H 1.09000 * 109.46978 * 25.11854 * 20 19 18 34 34 H 1.08995 * 109.47262 * 145.11703 * 20 19 18 35 35 H 1.08994 * 109.46882 * 179.97438 * 21 20 19 36 36 H 1.08995 * 109.47018 * 300.00227 * 21 20 19 37 37 H 1.09001 * 109.46835 * 59.99777 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 1 3.1262 1.4439 0.0901 5 6 1.4384 2.1880 1.1635 6 1 0.8288 3.0620 0.9878 7 6 1.6663 1.7541 2.4521 8 7 2.4090 0.6899 2.6661 9 14 0.9214 2.6784 3.8944 10 1 0.1339 3.8318 3.3896 11 1 0.0310 1.7684 4.6589 12 1 2.0065 3.1696 4.7813 13 7 1.6518 2.0992 -1.2555 14 6 2.6363 1.8358 -2.3134 15 6 2.2534 2.5967 -3.5566 16 6 2.7097 3.8077 -3.9291 17 7 2.1263 4.1312 -5.0927 18 6 1.3262 3.1663 -5.4558 19 7 1.3800 2.1868 -4.5276 20 6 0.6396 0.9229 -4.5536 21 6 -0.6481 1.0694 -3.7403 22 1 -0.3634 0.5996 -0.8346 23 1 -0.3634 0.4229 0.9366 24 1 -0.3633 -1.0226 -0.1021 25 1 1.8933 -0.5138 0.8899 26 1 1.8933 -0.5138 -0.8901 27 1 2.5690 0.3845 3.5728 28 1 1.5229 3.0906 -1.1202 29 1 3.6229 2.1575 -1.9800 30 1 2.6572 0.7683 -2.5328 31 1 3.4206 4.4127 -3.3858 32 1 0.7236 3.1518 -6.3519 33 1 0.3916 0.6682 -5.5840 34 1 1.2541 0.1329 -4.1219 35 1 -1.1991 0.1292 -3.7601 36 1 -0.4001 1.3241 -2.7100 37 1 -1.2625 1.8594 -4.1721 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085183955.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:31 Heat of formation + Delta-G solvation = 50.736836 kcal Electronic energy + Delta-G solvation = -17367.738535 eV Core-core repulsion = 14759.747532 eV Total energy + Delta-G solvation = -2607.991003 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.80586 -36.38379 -34.70052 -32.99360 -31.07968 -29.75544 -29.07957 -26.36877 -24.07406 -23.54267 -23.11159 -21.12835 -19.51982 -19.00414 -17.05380 -16.21727 -15.32781 -14.89279 -14.65862 -14.00466 -13.81644 -13.58782 -13.30842 -13.11135 -12.75668 -12.43285 -12.23814 -11.90890 -11.82053 -11.30667 -11.09522 -10.96144 -10.78989 -10.44747 -10.17353 -9.82680 -9.61914 -9.42778 -9.31177 -8.83520 -8.52005 -8.07541 -7.32335 -6.05998 -4.10761 2.32326 3.04351 3.26205 3.34937 3.38802 3.44012 4.37997 4.75407 4.89987 5.00564 5.15069 5.25499 5.26967 5.37199 5.66051 5.78111 5.82615 5.84667 6.12362 6.13666 6.40978 6.45150 6.64667 6.73224 6.80174 7.03286 7.14778 7.23225 7.43530 7.47946 7.68215 7.75727 7.77797 8.18353 8.30624 8.34939 8.59543 8.97831 9.54234 11.00298 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.032090 B = 0.006555 C = 0.006045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.330689 B = 4270.231835 C = 4631.070140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.099 4.099 3 C 0.216 3.784 4 H 0.002 0.998 5 C -0.512 4.512 6 H 0.059 0.941 7 C 0.064 3.936 8 N -0.889 5.889 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.285 1.285 13 N -0.680 5.680 14 C 0.131 3.869 15 C 0.003 3.997 16 C -0.037 4.037 17 N -0.498 5.498 18 C 0.165 3.835 19 N -0.445 5.445 20 C 0.107 3.893 21 C -0.176 4.176 22 H 0.046 0.954 23 H 0.053 0.947 24 H 0.011 0.989 25 H 0.083 0.917 26 H 0.008 0.992 27 H 0.260 0.740 28 H 0.335 0.665 29 H 0.045 0.955 30 H 0.068 0.932 31 H 0.164 0.836 32 H 0.197 0.803 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.068 0.932 36 H 0.096 0.904 37 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.957 -1.209 -11.980 12.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.138 4.138 3 C 0.108 3.892 4 H 0.020 0.980 5 C -0.550 4.550 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.528 5.528 9 Si 0.720 3.280 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.312 5.312 14 C 0.000 4.000 15 C -0.113 4.113 16 C -0.186 4.186 17 N -0.216 5.216 18 C -0.117 4.117 19 N -0.128 5.128 20 C -0.015 4.015 21 C -0.233 4.233 22 H 0.065 0.935 23 H 0.072 0.928 24 H 0.030 0.970 25 H 0.102 0.898 26 H 0.027 0.973 27 H 0.070 0.930 28 H 0.153 0.847 29 H 0.063 0.937 30 H 0.086 0.914 31 H 0.181 0.819 32 H 0.214 0.786 33 H 0.102 0.898 34 H 0.107 0.893 35 H 0.087 0.913 36 H 0.114 0.886 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.248 -1.256 -12.457 12.934 hybrid contribution 0.154 0.185 1.526 1.544 sum -3.094 -1.071 -10.931 11.411 Atomic orbital electron populations 1.21471 0.97499 0.96971 1.01658 1.21403 0.95127 0.98173 0.99067 1.19162 0.93874 0.91708 0.84436 0.98030 1.21193 1.31467 1.11971 0.90391 0.92233 1.24867 0.95122 0.95014 0.98748 1.69901 1.38347 1.23682 1.20823 0.86541 0.79006 0.79915 0.82572 1.19768 1.21038 1.21113 1.60764 1.45194 1.16731 1.08509 1.20312 0.94622 0.97849 0.87218 1.21464 0.97575 0.98105 0.94167 1.22020 1.05348 0.95486 0.95710 1.70205 1.10813 1.26894 1.13729 1.24738 1.03516 0.86029 0.97385 1.45428 1.32941 1.16351 1.18112 1.21760 0.94193 0.83948 1.01612 1.22263 0.95554 1.02049 1.03485 0.93544 0.92799 0.96965 0.89834 0.97321 0.93012 0.84733 0.93722 0.91414 0.81868 0.78591 0.89815 0.89346 0.91345 0.88552 0.92766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.52 9.41 37.15 0.35 -2.17 16 2 C -0.10 -2.26 5.56 -26.73 -0.15 -2.41 16 3 C 0.22 5.05 2.31 -68.86 -0.16 4.89 16 4 H 0.00 0.05 7.73 -51.92 -0.40 -0.35 16 5 C -0.51 -13.23 7.21 -34.44 -0.25 -13.48 16 6 H 0.06 1.55 7.61 -52.49 -0.40 1.15 16 7 C 0.06 1.71 5.27 -17.82 -0.09 1.61 16 8 N -0.89 -24.46 11.38 55.43 0.63 -23.83 16 9 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 10 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 N -0.68 -13.33 5.18 -109.22 -0.57 -13.90 16 14 C 0.13 2.24 5.77 -4.98 -0.03 2.21 16 15 C 0.00 0.04 6.43 -81.60 -0.52 -0.48 16 16 C -0.04 -0.62 11.79 -17.81 -0.21 -0.83 16 17 N -0.50 -8.31 11.25 -14.66 -0.16 -8.47 16 18 C 0.17 2.29 12.56 -90.37 -1.13 1.15 16 19 N -0.45 -6.21 2.75 -113.99 -0.31 -6.53 16 20 C 0.11 1.20 6.66 -4.04 -0.03 1.17 16 21 C -0.18 -2.10 10.24 37.16 0.38 -1.72 16 22 H 0.05 0.93 6.14 -51.93 -0.32 0.61 16 23 H 0.05 1.26 7.28 -51.93 -0.38 0.88 16 24 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 25 H 0.08 2.15 6.22 -51.93 -0.32 1.83 16 26 H 0.01 0.17 7.47 -51.93 -0.39 -0.22 16 27 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 28 H 0.34 6.82 8.15 -39.30 -0.32 6.50 16 29 H 0.04 0.78 7.96 -51.93 -0.41 0.37 16 30 H 0.07 1.15 6.82 -51.93 -0.35 0.80 16 31 H 0.16 2.49 8.06 -52.49 -0.42 2.07 16 32 H 0.20 1.92 8.06 -52.49 -0.42 1.50 16 33 H 0.08 0.69 8.13 -51.93 -0.42 0.27 16 34 H 0.09 1.02 7.45 -51.93 -0.39 0.63 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.10 1.49 6.17 -51.93 -0.32 1.17 16 37 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 300.60 15.07 4.53 4.53 Total: -1.00 -28.45 300.60 -8.42 -36.87 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -5.67 Total: 5.59 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: -1.84 Total: -10.04 kcal Atomic # 7 Polarization: -52.32 SS G_CDS: -0.41 Total: -52.74 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.45 -8.42 -36.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085183955.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.610 kcal (2) G-P(sol) polarization free energy of solvation -28.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds