Wall clock time and date at job start Mon Mar 30 2020 03:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.46711 * 2 1 4 4 H 1.09008 * 109.46926 * 174.96951 * 3 2 1 5 5 C 1.50700 * 109.47217 * 54.97254 * 3 2 1 6 6 H 1.08001 * 120.00165 * 239.99992 * 5 3 2 7 7 C 1.37874 * 119.99769 * 59.99758 * 5 3 2 8 8 N 1.31521 * 120.00319 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99971 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47069 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47157 * 120.00083 * 9 7 5 12 12 H 1.48502 * 109.47374 * 240.00145 * 9 7 5 13 13 N 1.46899 * 109.47504 * 294.96972 * 3 2 1 14 14 C 1.46895 * 111.00116 * 274.24729 * 13 3 2 15 15 C 1.50703 * 109.47130 * 183.67994 * 14 13 3 16 16 C 1.34668 * 126.59303 * 95.02408 * 15 14 13 17 17 N 1.34124 * 108.02438 * 179.97438 * 16 15 14 18 18 C 1.30505 * 109.25540 * 359.97438 * 17 16 15 19 19 N 1.35047 * 108.69526 * 359.77248 * 18 17 16 20 20 C 1.46505 * 126.39524 * 180.26888 * 19 18 17 21 21 C 1.53003 * 109.46972 * 265.11874 * 20 19 18 22 22 H 1.08998 * 109.47645 * 54.30473 * 1 2 3 23 23 H 1.08997 * 109.47595 * 294.29879 * 1 2 3 24 24 H 1.09007 * 109.46966 * 174.29788 * 1 2 3 25 25 H 1.08998 * 109.47266 * 120.00196 * 2 1 3 26 26 H 1.09006 * 109.47383 * 240.00529 * 2 1 3 27 27 H 0.97000 * 119.99759 * 180.02562 * 8 7 5 28 28 H 1.00892 * 111.00236 * 150.28823 * 13 3 2 29 29 H 1.09002 * 109.47243 * 303.67766 * 14 13 3 30 30 H 1.09001 * 109.47481 * 63.67735 * 14 13 3 31 31 H 1.08002 * 125.98873 * 359.95905 * 16 15 14 32 32 H 1.07997 * 125.65189 * 179.97438 * 18 17 16 33 33 H 1.09000 * 109.46978 * 25.11854 * 20 19 18 34 34 H 1.08995 * 109.47262 * 145.11703 * 20 19 18 35 35 H 1.08994 * 109.46882 * 179.97438 * 21 20 19 36 36 H 1.08995 * 109.47018 * 300.00227 * 21 20 19 37 37 H 1.09001 * 109.46835 * 59.99777 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 1 3.1262 1.4439 0.0901 5 6 1.4384 2.1880 1.1635 6 1 0.8288 3.0620 0.9878 7 6 1.6663 1.7541 2.4521 8 7 2.4090 0.6899 2.6661 9 14 0.9214 2.6784 3.8944 10 1 0.1339 3.8318 3.3896 11 1 0.0310 1.7684 4.6589 12 1 2.0065 3.1696 4.7813 13 7 1.6518 2.0992 -1.2555 14 6 2.6363 1.8358 -2.3134 15 6 2.2534 2.5967 -3.5566 16 6 2.7097 3.8077 -3.9291 17 7 2.1263 4.1312 -5.0927 18 6 1.3262 3.1663 -5.4558 19 7 1.3800 2.1868 -4.5276 20 6 0.6396 0.9229 -4.5536 21 6 -0.6481 1.0694 -3.7403 22 1 -0.3634 0.5996 -0.8346 23 1 -0.3634 0.4229 0.9366 24 1 -0.3633 -1.0226 -0.1021 25 1 1.8933 -0.5138 0.8899 26 1 1.8933 -0.5138 -0.8901 27 1 2.5690 0.3845 3.5728 28 1 1.5229 3.0906 -1.1202 29 1 3.6229 2.1575 -1.9800 30 1 2.6572 0.7683 -2.5328 31 1 3.4206 4.4127 -3.3858 32 1 0.7236 3.1518 -6.3519 33 1 0.3916 0.6682 -5.5840 34 1 1.2541 0.1329 -4.1219 35 1 -1.1991 0.1292 -3.7601 36 1 -0.4001 1.3241 -2.7100 37 1 -1.2625 1.8594 -4.1721 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085183955.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:30 Heat of formation + Delta-G solvation = 34.760989 kcal Electronic energy + Delta-G solvation = -17368.431300 eV Core-core repulsion = 14759.747532 eV Total energy + Delta-G solvation = -2608.683768 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.95476 -38.12628 -35.74523 -34.74709 -32.87888 -30.88742 -30.45864 -28.14680 -25.70006 -24.88055 -24.49790 -22.26319 -21.06049 -20.50794 -18.50426 -17.76350 -16.93622 -16.29165 -16.11834 -15.40289 -15.31817 -14.99215 -14.73382 -14.40235 -14.15524 -13.99161 -13.54903 -13.36482 -13.14344 -12.85281 -12.72367 -12.50916 -12.40824 -12.07421 -11.94294 -11.61839 -11.23938 -10.85039 -10.78374 -10.54065 -10.42615 -9.34130 -8.97905 -8.09369 -6.19908 1.14986 1.39793 1.43560 1.53196 2.00598 2.24356 2.43260 3.20530 3.68644 3.86282 3.91518 3.96323 4.25245 4.33851 4.45837 4.51572 4.65296 4.70976 4.77922 4.83233 4.94857 4.96619 5.04004 5.27371 5.39363 5.49632 5.56250 5.59794 5.74017 5.82160 5.85203 5.94900 6.28686 6.41342 6.49217 6.77090 7.01432 7.18137 7.48589 8.95949 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.032090 B = 0.006555 C = 0.006045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.330689 B = 4270.231835 C = 4631.070140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.093 4.093 3 C 0.223 3.777 4 H -0.033 1.033 5 C -0.520 4.520 6 H 0.054 0.946 7 C 0.021 3.979 8 N -0.915 5.915 9 Si 0.948 3.052 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.284 1.284 13 N -0.667 5.667 14 C 0.140 3.860 15 C -0.010 4.010 16 C -0.051 4.051 17 N -0.533 5.533 18 C 0.181 3.819 19 N -0.444 5.444 20 C 0.103 3.897 21 C -0.171 4.171 22 H 0.057 0.943 23 H 0.026 0.974 24 H 0.033 0.967 25 H 0.052 0.948 26 H 0.025 0.975 27 H 0.260 0.740 28 H 0.330 0.670 29 H 0.036 0.964 30 H 0.071 0.929 31 H 0.164 0.836 32 H 0.240 0.760 33 H 0.124 0.876 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.059 0.941 37 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.346 -1.474 -13.617 14.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.131 4.131 3 C 0.115 3.885 4 H -0.015 1.015 5 C -0.559 4.559 6 H 0.072 0.928 7 C -0.179 4.179 8 N -0.555 5.555 9 Si 0.775 3.225 10 H -0.194 1.194 11 H -0.208 1.208 12 H -0.210 1.210 13 N -0.298 5.298 14 C 0.010 3.990 15 C -0.127 4.127 16 C -0.199 4.199 17 N -0.252 5.252 18 C -0.101 4.101 19 N -0.126 5.126 20 C -0.018 4.018 21 C -0.228 4.228 22 H 0.076 0.924 23 H 0.046 0.954 24 H 0.053 0.947 25 H 0.071 0.929 26 H 0.043 0.957 27 H 0.069 0.931 28 H 0.147 0.853 29 H 0.055 0.945 30 H 0.090 0.910 31 H 0.181 0.819 32 H 0.256 0.744 33 H 0.142 0.858 34 H 0.103 0.897 35 H 0.106 0.894 36 H 0.078 0.922 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.645 -1.530 -14.102 14.926 hybrid contribution 0.581 0.266 1.940 2.043 sum -4.064 -1.264 -12.162 12.885 Atomic orbital electron populations 1.21332 0.96026 0.98379 1.00656 1.21253 0.96302 0.97294 0.98300 1.18944 0.91562 0.92467 0.85577 1.01522 1.21439 1.31125 1.11868 0.91439 0.92786 1.25532 0.95572 0.95733 1.01024 1.70023 1.39412 1.24835 1.21183 0.85653 0.78231 0.78854 0.79780 1.19392 1.20776 1.21003 1.60695 1.45742 1.16022 1.07312 1.20160 0.93582 0.98221 0.87071 1.21145 0.99042 0.98095 0.94409 1.22175 1.05709 0.95847 0.96173 1.70206 1.12362 1.28538 1.14062 1.25569 1.02056 0.84738 0.97762 1.45606 1.32405 1.17265 1.17341 1.22022 0.93303 0.82488 1.03944 1.22186 0.96171 1.03182 1.01292 0.92368 0.95435 0.94748 0.92912 0.95667 0.93082 0.85302 0.94545 0.91048 0.81868 0.74411 0.85790 0.89703 0.89421 0.92183 0.92348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.43 9.41 71.98 0.68 -3.75 16 2 C -0.09 -4.24 5.56 30.59 0.17 -4.07 16 3 C 0.22 10.63 2.31 44.17 0.10 10.73 16 4 H -0.03 -1.77 7.73 -2.38 -0.02 -1.79 16 5 C -0.52 -27.28 7.21 25.60 0.18 -27.10 16 6 H 0.05 2.84 7.61 -2.91 -0.02 2.82 16 7 C 0.02 1.11 5.27 84.65 0.45 1.56 16 8 N -0.91 -51.29 11.38 21.45 0.24 -51.04 16 9 Si 0.95 42.97 29.54 68.60 2.03 44.99 16 10 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 11 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 12 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 13 N -0.67 -26.27 5.18 -499.45 -2.59 -28.86 16 14 C 0.14 4.79 5.77 85.56 0.49 5.29 16 15 C -0.01 -0.33 6.43 40.95 0.26 -0.06 16 16 C -0.05 -1.67 11.79 83.52 0.98 -0.68 16 17 N -0.53 -16.94 11.25 -200.31 -2.25 -19.20 16 18 C 0.18 4.46 12.56 180.26 2.26 6.72 16 19 N -0.44 -11.27 2.75 -514.54 -1.42 -12.69 16 20 C 0.10 1.97 6.66 86.38 0.58 2.54 16 21 C -0.17 -3.59 10.24 71.98 0.74 -2.86 16 22 H 0.06 2.26 6.14 -2.39 -0.01 2.24 16 23 H 0.03 1.26 7.28 -2.39 -0.02 1.24 16 24 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 25 H 0.05 2.75 6.22 -2.39 -0.01 2.74 16 26 H 0.02 1.03 7.47 -2.38 -0.02 1.02 16 27 H 0.26 13.95 8.31 -92.71 -0.77 13.18 16 28 H 0.33 13.60 8.15 -89.70 -0.73 12.87 16 29 H 0.04 1.31 7.96 -2.39 -0.02 1.29 16 30 H 0.07 2.38 6.82 -2.39 -0.02 2.36 16 31 H 0.16 5.07 8.06 -2.91 -0.02 5.05 16 32 H 0.24 3.52 8.06 -2.91 -0.02 3.49 16 33 H 0.12 1.41 8.13 -2.39 -0.02 1.39 16 34 H 0.08 1.71 7.45 -2.39 -0.02 1.69 16 35 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.06 1.74 6.17 -2.39 -0.01 1.72 16 37 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -61.71 300.60 3.23 -58.48 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: 0.32 Total: 20.00 kcal Atomic # 6 Polarization: -18.58 SS G_CDS: 6.90 Total: -11.68 kcal Atomic # 7 Polarization: -105.77 SS G_CDS: -6.01 Total: -111.79 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 44.99 kcal Total: -61.71 3.23 -58.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085183955.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.238 kcal (2) G-P(sol) polarization free energy of solvation -61.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds