Wall clock time and date at job start Mon Mar 30 2020 03:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.47064 * 2 1 4 4 C 1.39867 * 125.89488 * 125.00093 * 3 2 1 5 5 C 1.35321 * 107.91990 * 179.97438 * 4 3 2 6 6 C 1.50697 * 126.12852 * 180.02562 * 5 4 3 7 7 N 1.46504 * 109.46906 * 94.50534 * 6 5 4 8 8 C 1.36935 * 119.99770 * 95.25021 * 7 6 5 9 9 H 1.08001 * 119.99638 * 219.62264 * 8 7 6 10 10 C 1.38809 * 120.00235 * 39.62649 * 8 7 6 11 11 N 1.31620 * 120.00054 * 11.49668 * 10 8 7 12 12 Si 1.86797 * 120.00145 * 191.49771 * 10 8 7 13 13 H 1.48503 * 109.46924 * 90.00260 * 12 10 8 14 14 H 1.48502 * 109.47439 * 209.99740 * 12 10 8 15 15 H 1.48500 * 109.47311 * 330.00081 * 12 10 8 16 16 C 1.46504 * 120.00102 * 275.24470 * 7 6 5 17 17 C 1.53004 * 109.46820 * 93.52450 * 16 7 6 18 18 N 1.34943 * 107.74329 * 0.02562 * 5 4 3 19 19 C 1.46499 * 126.03557 * 180.25956 * 18 5 4 20 20 N 1.30833 * 125.90201 * 304.98151 * 3 2 1 21 21 H 1.09001 * 109.46917 * 299.99066 * 1 2 3 22 22 H 1.08992 * 109.47784 * 59.99782 * 1 2 3 23 23 H 1.09002 * 109.47067 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.46705 * 240.00505 * 2 1 3 25 25 H 1.08995 * 109.47120 * 120.00534 * 2 1 3 26 26 H 1.08002 * 126.03976 * 359.96454 * 4 3 2 27 27 H 1.08993 * 109.47376 * 214.51080 * 6 5 4 28 28 H 1.09001 * 109.47031 * 334.50608 * 6 5 4 29 29 H 0.97001 * 120.00299 * 180.02562 * 11 10 8 30 30 H 1.09003 * 109.46998 * 213.52590 * 16 7 6 31 31 H 1.08999 * 109.47272 * 333.52697 * 16 7 6 32 32 H 1.08999 * 109.46705 * 180.02562 * 17 16 7 33 33 H 1.08995 * 109.46911 * 299.99585 * 17 16 7 34 34 H 1.08999 * 109.46996 * 60.00078 * 17 16 7 35 35 H 1.09005 * 109.47722 * 264.97114 * 19 18 5 36 36 H 1.09001 * 109.46956 * 24.97701 * 19 18 5 37 37 H 1.09003 * 109.46865 * 144.97021 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9184 1.9773 0.9281 5 6 3.1220 3.2706 0.5857 6 6 4.0074 4.2524 1.3091 7 7 5.3310 4.2707 0.6814 8 6 5.6254 5.2122 -0.2683 9 1 6.2068 4.9398 -1.1368 10 6 5.1767 6.5168 -0.1149 11 7 4.6691 6.9072 1.0351 12 14 5.2932 7.7184 -1.5403 13 1 4.0495 7.6491 -2.3489 14 1 5.4650 9.0962 -1.0137 15 1 6.4575 7.3651 -2.3917 16 6 6.3397 3.2818 1.0699 17 6 6.2728 2.0847 0.1195 18 7 2.3903 3.5235 -0.5195 19 6 2.3199 4.8012 -1.2327 20 7 1.7152 2.3467 -0.8683 21 1 -0.3633 0.5137 0.8901 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5138 -0.8901 25 1 1.8933 -0.5139 0.8899 26 1 3.3616 1.4654 1.7695 27 1 3.5660 5.2475 1.2555 28 1 4.1043 3.9537 2.3528 29 1 4.3552 7.8187 1.1423 30 1 7.3305 3.7332 1.0166 31 1 6.1471 2.9475 2.0894 32 1 7.0230 1.3488 0.4088 33 1 5.2821 1.6333 0.1729 34 1 6.4654 2.4189 -0.9000 35 1 1.4563 5.3662 -0.8817 36 1 3.2288 5.3727 -1.0450 37 1 2.2221 4.6153 -2.3023 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089184682.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:40 Heat of formation + Delta-G solvation = 81.247381 kcal Electronic energy + Delta-G solvation = -17666.143724 eV Core-core repulsion = 15059.475757 eV Total energy + Delta-G solvation = -2606.667967 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.44223 -36.04874 -34.07938 -32.09891 -31.03178 -30.38868 -28.54142 -26.10156 -25.40793 -23.49582 -22.98639 -20.61329 -19.57272 -18.29676 -16.81040 -15.81169 -14.90054 -14.78552 -14.03934 -13.89132 -13.74460 -13.63611 -13.00364 -12.86840 -12.44021 -12.33556 -11.85696 -11.66846 -11.42784 -11.25529 -11.14657 -11.05457 -10.83024 -10.76812 -10.62983 -10.19340 -10.19043 -9.83761 -9.66796 -8.66751 -8.26852 -7.62484 -6.69768 -5.95181 -3.60080 2.73899 3.20117 3.30649 3.32378 3.38341 3.53714 4.30920 5.12635 5.14884 5.27980 5.50432 5.54906 5.63241 5.84203 5.91445 5.97931 6.03721 6.08509 6.14573 6.29665 6.39880 6.40971 6.42126 6.46515 6.53205 6.68066 6.71750 6.91564 7.04030 7.20958 7.45305 7.49125 7.66608 7.93638 8.37817 8.59969 9.03218 9.61719 10.23143 11.04201 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.028056 B = 0.008447 C = 0.007259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.753336 B = 3313.913529 C = 3856.587416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.036 4.036 3 C 0.063 3.937 4 C -0.298 4.298 5 C 0.112 3.888 6 C 0.188 3.812 7 N -0.575 5.575 8 C -0.252 4.252 9 H 0.061 0.939 10 C 0.009 3.991 11 N -0.891 5.891 12 Si 0.893 3.107 13 H -0.283 1.283 14 H -0.286 1.286 15 H -0.275 1.275 16 C 0.144 3.856 17 C -0.171 4.171 18 N -0.357 5.357 19 C 0.095 3.905 20 N -0.323 5.323 21 H 0.052 0.948 22 H 0.058 0.942 23 H 0.052 0.948 24 H 0.070 0.930 25 H 0.075 0.925 26 H 0.131 0.869 27 H 0.116 0.884 28 H 0.051 0.949 29 H 0.259 0.741 30 H 0.046 0.954 31 H 0.036 0.964 32 H 0.035 0.965 33 H 0.054 0.946 34 H 0.043 0.957 35 H 0.059 0.941 36 H 0.117 0.883 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.999 -7.717 -0.223 8.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.075 4.075 3 C -0.103 4.103 4 C -0.329 4.329 5 C -0.020 4.020 6 C 0.060 3.940 7 N -0.295 5.295 8 C -0.382 4.382 9 H 0.078 0.922 10 C -0.190 4.190 11 N -0.534 5.534 12 Si 0.722 3.278 13 H -0.209 1.209 14 H -0.212 1.212 15 H -0.200 1.200 16 C 0.018 3.982 17 C -0.230 4.230 18 N -0.138 5.138 19 C -0.047 4.047 20 N -0.147 5.147 21 H 0.071 0.929 22 H 0.077 0.923 23 H 0.071 0.929 24 H 0.089 0.911 25 H 0.093 0.907 26 H 0.149 0.851 27 H 0.133 0.867 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.077 0.923 36 H 0.135 0.865 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.699 -7.082 -1.281 8.595 hybrid contribution 0.513 0.480 -0.152 0.719 sum -4.186 -6.603 -1.433 7.948 Atomic orbital electron populations 1.21684 0.95108 1.00904 1.02356 1.19830 0.95674 0.89721 1.02270 1.22031 0.98004 0.95634 0.94585 1.20932 1.10614 0.94874 1.06448 1.23020 0.92774 0.97419 0.88739 1.19870 0.84333 0.97795 0.91997 1.43683 1.06571 1.32921 1.46352 1.19114 1.32357 0.87559 0.99183 0.92156 1.25321 1.00790 0.96688 0.96236 1.69807 1.43967 1.17419 1.22214 0.86456 0.78521 0.80836 0.82021 1.20919 1.21229 1.19988 1.20865 0.92967 0.89478 0.94859 1.22375 1.00722 0.99006 1.00913 1.48235 1.34772 1.09026 1.21765 1.22038 1.04969 0.81396 0.96293 1.77043 1.21296 0.92017 1.24301 0.92852 0.92324 0.92885 0.91132 0.90677 0.85061 0.86658 0.93069 0.93074 0.93578 0.94545 0.94641 0.92655 0.93755 0.92272 0.86451 0.91112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.87 37.16 0.37 -1.45 16 2 C -0.04 -0.51 6.51 -27.88 -0.18 -0.69 16 3 C 0.06 1.19 6.49 -82.41 -0.53 0.65 16 4 C -0.30 -5.90 9.07 -40.01 -0.36 -6.26 16 5 C 0.11 2.43 6.18 -82.27 -0.51 1.92 16 6 C 0.19 4.30 5.15 -5.19 -0.03 4.28 16 7 N -0.58 -13.65 2.42 -174.61 -0.42 -14.07 16 8 C -0.25 -6.41 8.49 -15.06 -0.13 -6.54 16 9 H 0.06 1.58 7.86 -52.49 -0.41 1.17 16 10 C 0.01 0.24 3.73 -17.43 -0.07 0.17 16 11 N -0.89 -23.45 11.09 55.49 0.62 -22.83 16 12 Si 0.89 19.96 29.23 -169.99 -4.97 14.99 16 13 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 14 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 15 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 16 C 0.14 3.01 6.43 -4.04 -0.03 2.98 16 17 C -0.17 -3.27 10.22 37.16 0.38 -2.89 16 18 N -0.36 -7.75 4.01 -63.88 -0.26 -8.01 16 19 C 0.09 1.90 11.22 59.85 0.67 2.57 16 20 N -0.32 -6.80 12.54 33.67 0.42 -6.37 16 21 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 22 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.07 0.93 8.12 -51.93 -0.42 0.51 16 26 H 0.13 2.35 8.06 -52.49 -0.42 1.93 16 27 H 0.12 2.89 5.05 -51.93 -0.26 2.63 16 28 H 0.05 1.12 7.95 -51.93 -0.41 0.71 16 29 H 0.26 6.60 8.31 -40.82 -0.34 6.26 16 30 H 0.05 0.97 8.07 -51.93 -0.42 0.55 16 31 H 0.04 0.71 7.91 -51.93 -0.41 0.30 16 32 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.05 1.10 6.10 -51.93 -0.32 0.78 16 34 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 36 H 0.12 2.61 4.40 -51.93 -0.23 2.38 16 37 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 300.94 15.07 4.54 4.54 Total: -1.00 -27.62 300.94 -6.31 -33.93 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -5.82 Total: 3.08 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: -0.42 Total: -5.25 kcal Atomic # 7 Polarization: -51.64 SS G_CDS: 0.36 Total: -51.28 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -4.97 Total: 14.99 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -27.62 -6.31 -33.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089184682.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.176 kcal (2) G-P(sol) polarization free energy of solvation -27.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds