Wall clock time and date at job start Mon Mar 30 2020 03:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.47064 * 2 1 4 4 C 1.39867 * 125.89488 * 125.00093 * 3 2 1 5 5 C 1.35321 * 107.91990 * 179.97438 * 4 3 2 6 6 C 1.50697 * 126.12852 * 180.02562 * 5 4 3 7 7 N 1.46504 * 109.46906 * 94.50534 * 6 5 4 8 8 C 1.36935 * 119.99770 * 95.25021 * 7 6 5 9 9 H 1.08001 * 119.99638 * 219.62264 * 8 7 6 10 10 C 1.38809 * 120.00235 * 39.62649 * 8 7 6 11 11 N 1.31620 * 120.00054 * 11.49668 * 10 8 7 12 12 Si 1.86797 * 120.00145 * 191.49771 * 10 8 7 13 13 H 1.48503 * 109.46924 * 90.00260 * 12 10 8 14 14 H 1.48502 * 109.47439 * 209.99740 * 12 10 8 15 15 H 1.48500 * 109.47311 * 330.00081 * 12 10 8 16 16 C 1.46504 * 120.00102 * 275.24470 * 7 6 5 17 17 C 1.53004 * 109.46820 * 93.52450 * 16 7 6 18 18 N 1.34943 * 107.74329 * 0.02562 * 5 4 3 19 19 C 1.46499 * 126.03557 * 180.25956 * 18 5 4 20 20 N 1.30833 * 125.90201 * 304.98151 * 3 2 1 21 21 H 1.09001 * 109.46917 * 299.99066 * 1 2 3 22 22 H 1.08992 * 109.47784 * 59.99782 * 1 2 3 23 23 H 1.09002 * 109.47067 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.46705 * 240.00505 * 2 1 3 25 25 H 1.08995 * 109.47120 * 120.00534 * 2 1 3 26 26 H 1.08002 * 126.03976 * 359.96454 * 4 3 2 27 27 H 1.08993 * 109.47376 * 214.51080 * 6 5 4 28 28 H 1.09001 * 109.47031 * 334.50608 * 6 5 4 29 29 H 0.97001 * 120.00299 * 180.02562 * 11 10 8 30 30 H 1.09003 * 109.46998 * 213.52590 * 16 7 6 31 31 H 1.08999 * 109.47272 * 333.52697 * 16 7 6 32 32 H 1.08999 * 109.46705 * 180.02562 * 17 16 7 33 33 H 1.08995 * 109.46911 * 299.99585 * 17 16 7 34 34 H 1.08999 * 109.46996 * 60.00078 * 17 16 7 35 35 H 1.09005 * 109.47722 * 264.97114 * 19 18 5 36 36 H 1.09001 * 109.46956 * 24.97701 * 19 18 5 37 37 H 1.09003 * 109.46865 * 144.97021 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9184 1.9773 0.9281 5 6 3.1220 3.2706 0.5857 6 6 4.0074 4.2524 1.3091 7 7 5.3310 4.2707 0.6814 8 6 5.6254 5.2122 -0.2683 9 1 6.2068 4.9398 -1.1368 10 6 5.1767 6.5168 -0.1149 11 7 4.6691 6.9072 1.0351 12 14 5.2932 7.7184 -1.5403 13 1 4.0495 7.6491 -2.3489 14 1 5.4650 9.0962 -1.0137 15 1 6.4575 7.3651 -2.3917 16 6 6.3397 3.2818 1.0699 17 6 6.2728 2.0847 0.1195 18 7 2.3903 3.5235 -0.5195 19 6 2.3199 4.8012 -1.2327 20 7 1.7152 2.3467 -0.8683 21 1 -0.3633 0.5137 0.8901 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5138 -0.8901 25 1 1.8933 -0.5139 0.8899 26 1 3.3616 1.4654 1.7695 27 1 3.5660 5.2475 1.2555 28 1 4.1043 3.9537 2.3528 29 1 4.3552 7.8187 1.1423 30 1 7.3305 3.7332 1.0166 31 1 6.1471 2.9475 2.0894 32 1 7.0230 1.3488 0.4088 33 1 5.2821 1.6333 0.1729 34 1 6.4654 2.4189 -0.9000 35 1 1.4563 5.3662 -0.8817 36 1 3.2288 5.3727 -1.0450 37 1 2.2221 4.6153 -2.3023 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089184682.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:39 Heat of formation + Delta-G solvation = 66.415361 kcal Electronic energy + Delta-G solvation = -17666.786889 eV Core-core repulsion = 15059.475757 eV Total energy + Delta-G solvation = -2607.311131 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.00913 -37.81568 -35.42111 -33.94166 -32.44950 -32.01231 -30.25547 -27.67839 -27.09810 -25.24394 -24.22803 -22.34113 -21.14687 -19.83255 -18.65762 -17.44202 -16.71889 -16.37859 -15.61874 -15.42110 -15.28750 -14.99995 -14.52054 -14.42694 -14.11426 -13.78469 -13.36477 -13.27400 -12.96794 -12.83847 -12.71769 -12.59093 -12.37692 -12.30455 -12.03576 -11.95358 -11.92642 -11.52807 -11.21213 -10.57296 -9.84862 -9.20471 -8.58090 -7.86937 -5.55953 1.14066 1.42028 1.47488 1.53778 1.82700 2.02006 2.45751 3.20887 3.77323 3.78535 4.01379 4.27108 4.34336 4.37945 4.45649 4.50485 4.63097 4.70393 4.80236 4.81587 4.87401 4.97120 5.01999 5.09015 5.09748 5.23667 5.28704 5.38233 5.43522 5.58380 5.64859 5.71561 6.01291 6.31356 6.46147 7.03211 7.12328 7.76605 8.33133 9.09465 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.028056 B = 0.008447 C = 0.007259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.753336 B = 3313.913529 C = 3856.587416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.036 4.036 3 C 0.065 3.935 4 C -0.296 4.296 5 C 0.094 3.906 6 C 0.197 3.803 7 N -0.588 5.588 8 C -0.260 4.260 9 H 0.047 0.953 10 C -0.020 4.020 11 N -0.914 5.914 12 Si 0.941 3.059 13 H -0.273 1.273 14 H -0.290 1.290 15 H -0.276 1.276 16 C 0.140 3.860 17 C -0.155 4.155 18 N -0.373 5.373 19 C 0.095 3.905 20 N -0.343 5.343 21 H 0.046 0.954 22 H 0.042 0.958 23 H 0.084 0.916 24 H 0.081 0.919 25 H 0.099 0.901 26 H 0.150 0.850 27 H 0.092 0.908 28 H 0.055 0.945 29 H 0.257 0.743 30 H 0.039 0.961 31 H 0.051 0.949 32 H 0.066 0.934 33 H 0.047 0.953 34 H 0.024 0.976 35 H 0.071 0.929 36 H 0.095 0.905 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.370 -9.411 -0.275 10.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.075 4.075 3 C -0.100 4.100 4 C -0.326 4.326 5 C -0.037 4.037 6 C 0.069 3.931 7 N -0.309 5.309 8 C -0.390 4.390 9 H 0.065 0.935 10 C -0.218 4.218 11 N -0.557 5.557 12 Si 0.769 3.231 13 H -0.199 1.199 14 H -0.216 1.216 15 H -0.201 1.201 16 C 0.015 3.985 17 C -0.214 4.214 18 N -0.154 5.154 19 C -0.047 4.047 20 N -0.166 5.166 21 H 0.066 0.934 22 H 0.061 0.939 23 H 0.102 0.898 24 H 0.099 0.901 25 H 0.117 0.883 26 H 0.168 0.832 27 H 0.110 0.890 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.066 0.934 34 H 0.043 0.957 35 H 0.090 0.910 36 H 0.114 0.886 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.069 -8.792 -1.336 10.236 hybrid contribution 0.631 0.934 -0.102 1.132 sum -4.437 -7.858 -1.437 9.138 Atomic orbital electron populations 1.21640 0.93968 1.02628 1.01261 1.20049 0.96599 0.86898 1.03953 1.22786 0.96829 0.97192 0.93227 1.21207 1.10306 0.94186 1.06927 1.22887 0.93492 0.98028 0.89318 1.19622 0.84237 0.97007 0.92279 1.43846 1.07521 1.33368 1.46164 1.19119 1.32344 0.88271 0.99309 0.93514 1.25759 1.00538 0.97663 0.97818 1.69922 1.44753 1.17489 1.23584 0.85701 0.78689 0.78775 0.79948 1.19853 1.21623 1.20078 1.20980 0.91954 0.89469 0.96122 1.22191 1.01259 0.98750 0.99224 1.48392 1.35334 1.09594 1.22054 1.22000 1.04353 0.81217 0.97082 1.77033 1.22004 0.92234 1.25357 0.93442 0.93919 0.89765 0.90091 0.88272 0.83188 0.89030 0.92723 0.93342 0.94281 0.93023 0.91494 0.93374 0.95719 0.91045 0.88635 0.89883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 9.87 71.98 0.71 -2.39 16 2 C -0.04 -0.91 6.51 29.85 0.19 -0.72 16 3 C 0.07 2.34 6.49 43.10 0.28 2.62 16 4 C -0.30 -11.19 9.07 21.99 0.20 -10.99 16 5 C 0.09 4.02 6.18 41.41 0.26 4.28 16 6 C 0.20 9.03 5.15 85.63 0.44 9.47 16 7 N -0.59 -27.98 2.42 -706.33 -1.71 -29.68 16 8 C -0.26 -13.39 8.49 84.03 0.71 -12.67 16 9 H 0.05 2.50 7.86 -2.91 -0.02 2.48 16 10 C -0.02 -1.02 3.73 84.86 0.32 -0.70 16 11 N -0.91 -48.73 11.09 21.65 0.24 -48.49 16 12 Si 0.94 41.21 29.23 68.60 2.01 43.21 16 13 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 14 H -0.29 -12.80 7.11 99.48 0.71 -12.10 16 15 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 16 C 0.14 5.72 6.43 86.38 0.56 6.28 16 17 C -0.15 -5.69 10.22 71.98 0.74 -4.96 16 18 N -0.37 -16.05 4.01 -356.03 -1.43 -17.48 16 19 C 0.09 3.82 11.22 127.77 1.43 5.25 16 20 N -0.34 -14.05 12.54 -47.39 -0.59 -14.65 16 21 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 22 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 23 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 24 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 25 H 0.10 2.05 8.12 -2.39 -0.02 2.03 16 26 H 0.15 4.98 8.06 -2.91 -0.02 4.95 16 27 H 0.09 4.69 5.05 -2.39 -0.01 4.68 16 28 H 0.05 2.39 7.95 -2.39 -0.02 2.38 16 29 H 0.26 13.28 8.31 -92.71 -0.77 12.51 16 30 H 0.04 1.63 8.07 -2.39 -0.02 1.61 16 31 H 0.05 1.93 7.91 -2.39 -0.02 1.91 16 32 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.05 1.82 6.10 -2.39 -0.01 1.81 16 34 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.07 2.61 8.14 -2.38 -0.02 2.59 16 36 H 0.10 4.30 4.40 -2.39 -0.01 4.29 16 37 H 0.08 3.03 8.14 -2.39 -0.02 3.01 16 Total: -1.00 -58.47 300.94 5.39 -53.08 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: 1.03 Total: 18.55 kcal Atomic # 6 Polarization: -10.36 SS G_CDS: 5.84 Total: -4.53 kcal Atomic # 7 Polarization: -106.82 SS G_CDS: -3.49 Total: -110.31 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.01 Total: 43.21 kcal Total: -58.47 5.39 -53.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089184682.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.494 kcal (2) G-P(sol) polarization free energy of solvation -58.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds