Wall clock time and date at job start Mon Mar 30 2020 03:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39868 * 125.89404 * 2 1 4 4 C 1.35320 * 107.92085 * 180.14214 * 3 2 1 5 5 C 1.50700 * 126.12923 * 179.90964 * 4 3 2 6 6 N 1.46495 * 109.47251 * 94.63083 * 5 4 3 7 7 C 1.36934 * 120.00313 * 84.02863 * 6 5 4 8 8 H 1.08005 * 119.99723 * 344.47220 * 7 6 5 9 9 C 1.38805 * 120.00101 * 164.74592 * 7 6 5 10 10 N 1.31621 * 120.00438 * 356.88365 * 9 7 6 11 11 Si 1.86801 * 120.00129 * 176.88241 * 9 7 6 12 12 H 1.48506 * 109.47079 * 59.99748 * 11 9 7 13 13 H 1.48500 * 109.47581 * 179.97438 * 11 9 7 14 14 H 1.48504 * 109.47313 * 300.00286 * 11 9 7 15 15 C 1.46507 * 119.99864 * 264.02194 * 6 5 4 16 16 C 1.52994 * 109.47083 * 357.17704 * 15 6 5 17 17 C 1.52999 * 109.46841 * 117.17294 * 15 6 5 18 18 N 1.34945 * 107.74350 * 359.63868 * 4 3 2 19 19 C 1.46500 * 126.03873 * 180.20966 * 18 4 3 20 20 N 1.30829 * 125.90481 * 179.73750 * 2 1 3 21 21 H 1.09002 * 109.46933 * 270.23211 * 1 2 3 22 22 H 1.08993 * 109.46934 * 30.23851 * 1 2 3 23 23 H 1.09004 * 109.46756 * 150.23626 * 1 2 3 24 24 H 1.08004 * 126.04354 * 0.02562 * 3 2 1 25 25 H 1.09002 * 109.46921 * 334.62276 * 5 4 3 26 26 H 1.09002 * 109.46801 * 214.63322 * 5 4 3 27 27 H 0.96996 * 120.00341 * 180.02562 * 10 9 7 28 28 H 1.08995 * 109.47483 * 237.17442 * 15 6 5 29 29 H 1.09011 * 109.47528 * 59.99479 * 16 15 6 30 30 H 1.09000 * 109.47399 * 179.97438 * 16 15 6 31 31 H 1.08997 * 109.47281 * 299.99927 * 16 15 6 32 32 H 1.09003 * 109.47270 * 63.97456 * 17 15 6 33 33 H 1.09000 * 109.47550 * 183.97383 * 17 15 6 34 34 H 1.09001 * 109.47472 * 303.97645 * 17 15 6 35 35 H 1.08997 * 109.47874 * 90.00216 * 19 18 4 36 36 H 1.09001 * 109.46804 * 210.00268 * 19 18 4 37 37 H 1.08998 * 109.47114 * 329.99651 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1331 0.0000 4 6 3.6142 0.7155 -0.0032 5 6 4.8350 1.5991 -0.0063 6 7 5.2994 1.7952 1.3692 7 6 6.1134 0.8637 1.9564 8 1 6.2124 -0.1190 1.5194 9 6 6.8066 1.1805 3.1165 10 7 6.7301 2.3950 3.6181 11 14 7.8483 -0.1168 3.9659 12 1 8.9039 -0.5912 3.0353 13 1 8.4816 0.4699 5.1742 14 1 6.9882 -1.2604 4.3630 15 6 4.8931 2.9881 2.1165 16 6 4.0508 3.8925 1.2147 17 6 4.0667 2.5700 3.3343 18 7 3.6088 -0.6339 0.0030 19 6 4.7900 -1.5005 0.0066 20 7 2.2743 -1.0597 0.0049 21 1 -0.3633 0.0042 1.0277 22 1 -0.3633 0.8878 -0.5175 23 1 -0.3633 -0.8921 -0.5102 24 1 1.9922 2.1599 0.0004 25 1 4.5838 2.5643 -0.4461 26 1 5.6236 1.1271 -0.5923 27 1 7.2148 2.6164 4.4285 28 1 5.7796 3.5290 2.4474 29 1 3.1641 3.3515 0.8837 30 1 3.7481 4.7797 1.7707 31 1 4.6395 4.1903 0.3471 32 1 4.6882 1.9840 4.0114 33 1 3.7051 3.4591 3.8508 34 1 3.2179 1.9687 3.0084 35 1 5.0833 -1.7109 1.0350 36 1 4.5563 -2.4353 -0.5030 37 1 5.6092 -1.0003 -0.5098 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089184780.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:16 Heat of formation + Delta-G solvation = 105.671385 kcal Electronic energy + Delta-G solvation = -17925.698188 eV Core-core repulsion = 15320.089325 eV Total energy + Delta-G solvation = -2605.608862 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.57470 -36.69125 -33.44975 -31.98635 -31.00248 -29.52530 -28.70095 -26.29651 -25.26218 -24.60264 -23.07958 -19.83414 -19.31832 -18.47351 -16.67709 -16.00632 -15.26897 -14.58051 -13.98041 -13.68456 -13.55909 -13.41049 -13.11677 -12.68797 -12.55778 -11.85693 -11.84242 -11.64926 -11.53353 -11.40317 -11.11014 -10.97367 -10.72920 -10.63813 -10.26221 -9.93679 -9.69157 -9.54436 -9.50201 -8.51380 -8.35076 -7.77754 -6.89412 -5.60781 -3.21393 2.58244 3.18332 3.33481 3.37931 3.39830 3.43414 4.44336 5.06428 5.28532 5.44539 5.48706 5.56649 5.66609 5.75956 5.87504 5.97257 5.99369 6.04598 6.19975 6.32169 6.37689 6.40183 6.54342 6.58541 6.86543 6.94670 7.04654 7.12226 7.30526 7.33510 7.59990 7.74844 8.04838 8.05294 8.41063 8.45520 9.24083 9.82975 10.26549 11.26029 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.024499 B = 0.009611 C = 0.007932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.630335 B = 2912.644812 C = 3529.116496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.061 3.939 3 C -0.288 4.288 4 C 0.103 3.897 5 C 0.194 3.806 6 N -0.582 5.582 7 C -0.246 4.246 8 H 0.071 0.929 9 C -0.001 4.001 10 N -0.904 5.904 11 Si 0.904 3.096 12 H -0.284 1.284 13 H -0.289 1.289 14 H -0.287 1.287 15 C 0.179 3.821 16 C -0.170 4.170 17 C -0.133 4.133 18 N -0.363 5.363 19 C 0.108 3.892 20 N -0.321 5.321 21 H 0.069 0.931 22 H 0.071 0.929 23 H 0.064 0.936 24 H 0.136 0.864 25 H 0.079 0.921 26 H 0.052 0.948 27 H 0.251 0.749 28 H 0.114 0.886 29 H 0.047 0.953 30 H 0.044 0.956 31 H 0.043 0.957 32 H 0.075 0.925 33 H 0.017 0.983 34 H 0.014 0.986 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.827 -1.051 -6.578 8.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.104 4.104 3 C -0.318 4.318 4 C -0.029 4.029 5 C 0.064 3.936 6 N -0.303 5.303 7 C -0.375 4.375 8 H 0.089 0.911 9 C -0.198 4.198 10 N -0.551 5.551 11 Si 0.735 3.265 12 H -0.210 1.210 13 H -0.215 1.215 14 H -0.213 1.213 15 C 0.075 3.925 16 C -0.228 4.228 17 C -0.192 4.192 18 N -0.145 5.145 19 C -0.034 4.034 20 N -0.145 5.145 21 H 0.088 0.912 22 H 0.090 0.910 23 H 0.083 0.917 24 H 0.154 0.846 25 H 0.097 0.903 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.131 0.869 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.094 0.906 33 H 0.037 0.963 34 H 0.033 0.967 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.521 -2.332 -6.386 8.758 hybrid contribution 0.394 0.041 0.744 0.843 sum -5.127 -2.292 -5.642 7.960 Atomic orbital electron populations 1.20057 0.87703 1.02325 1.02273 1.22122 0.96269 0.91402 1.00620 1.20969 0.91368 0.98851 1.20571 1.22929 0.99232 0.84481 0.96231 1.19597 0.89483 0.95558 0.88995 1.44212 1.54141 1.23401 1.08565 1.19248 1.17993 0.93067 1.07183 0.91116 1.24854 0.99567 0.96487 0.98854 1.69925 1.44737 1.17508 1.22937 0.86323 0.80346 0.80754 0.79100 1.20999 1.21484 1.21345 1.21006 0.96877 0.86224 0.88439 1.22438 1.00279 0.99897 1.00140 1.22219 0.98238 0.98571 1.00151 1.48226 1.04675 1.04756 1.56809 1.21797 0.84243 0.93802 1.03568 1.77094 0.86967 1.23058 1.27398 0.91207 0.91028 0.91699 0.84606 0.90336 0.93033 0.93746 0.86940 0.93402 0.93669 0.93791 0.90647 0.96349 0.96700 0.90502 0.90701 0.89592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.88 10.45 36.01 0.38 -0.50 16 2 C 0.06 1.13 7.22 -82.41 -0.59 0.54 16 3 C -0.29 -5.48 9.92 -40.01 -0.40 -5.88 16 4 C 0.10 2.06 6.46 -82.26 -0.53 1.53 16 5 C 0.19 3.86 5.23 -5.20 -0.03 3.83 16 6 N -0.58 -13.66 2.68 -167.03 -0.45 -14.11 16 7 C -0.25 -6.24 9.42 -15.06 -0.14 -6.38 16 8 H 0.07 1.72 5.40 -52.48 -0.28 1.43 16 9 C 0.00 -0.03 4.56 -17.43 -0.08 -0.11 16 10 N -0.90 -24.42 8.20 55.49 0.45 -23.96 16 11 Si 0.90 21.10 29.55 -169.99 -5.02 16.07 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 14 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 15 C 0.18 4.15 2.87 -67.93 -0.19 3.95 16 16 C -0.17 -3.23 7.86 37.15 0.29 -2.94 16 17 C -0.13 -3.18 8.67 37.16 0.32 -2.86 16 18 N -0.36 -7.24 4.01 -63.89 -0.26 -7.49 16 19 C 0.11 1.80 10.08 59.85 0.60 2.40 16 20 N -0.32 -6.51 12.57 33.67 0.42 -6.09 16 21 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 22 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 23 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 24 H 0.14 2.37 6.57 -52.48 -0.35 2.02 16 25 H 0.08 1.44 5.46 -51.93 -0.28 1.15 16 26 H 0.05 0.98 7.19 -51.93 -0.37 0.61 16 27 H 0.25 6.71 8.31 -40.82 -0.34 6.37 16 28 H 0.11 2.96 5.77 -51.93 -0.30 2.66 16 29 H 0.05 0.88 5.23 -51.92 -0.27 0.61 16 30 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.04 0.78 7.07 -51.93 -0.37 0.41 16 32 H 0.07 2.02 5.66 -51.93 -0.29 1.73 16 33 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.08 1.37 7.22 -51.93 -0.37 1.00 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.09 1.32 7.07 -51.93 -0.37 0.95 16 LS Contribution 289.00 15.07 4.36 4.36 Total: -1.00 -29.23 289.00 -6.22 -35.45 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -5.35 Total: 2.19 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: -0.37 Total: -6.42 kcal Atomic # 7 Polarization: -51.82 SS G_CDS: 0.17 Total: -51.65 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -29.23 -6.22 -35.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089184780.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.121 kcal (2) G-P(sol) polarization free energy of solvation -29.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds